New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	6088872 =	51 (0.970)	4 (0.080)	4/242	NT	8.3%	coding (51/1104 nt)	potF‑IV	putrescine‑binding protein
	?	NC_002947	6088914 =	40 (0.800)					coding (93/1104 nt)	potF‑IV	putrescine‑binding protein

ATCAACGCGGTCAATGTGCTGGAAGGCTTCCAGCGCGCCCAGTCAGGAGCCCGATAATGGTCCGACTCAAACGTCTGCTCGCCCCGTTCATCGCTGCCACCCTGTTCGCAGGCGCCCTGCATGCACAAGCCGAGCAGCGCACCCTGCGTGTATATAACTGGTTCGATTACATCACCCCACAGACCTTGACTGCCTTCCAGAAGGACAGCGGCGTGAAGCTGGTGTACGACATCTTCGACACCAACGAGGCGCTGGAAGCCAAGCTGCTGACCGGCAACTCCG  >  NC_002947/6088766‑6089047                                                                                                                                                     |                                                                                                                                      aTCAACGCGGTCAATGTGCTGGAAGGCTTCCAGCGCGCCCAGTCAGGAGCCCGATAATGGTCCGACTCAAACGTCTGCTCGCCCCGTTCATCGCTGCCACCCTGTTCGCAGGCGCCCTGCATGCACAAGCCGAGCAGCGCACCCTGCgt                                                                                                                                       >  2:306952/1‑149 (MQ=255)   cAACGCGGTCAATGTGCTGGAAGGCTTCCAGCGCGCCCAGTCAGGAGCCCGATAATGGTCCGACTCAAACGTCTGCTCGCCCCGTTCATCGCTGCCACCCTGTTCGCAGGCGCCCTGCATGCACAAGCCGAGCAGCGCACCCTGCgtg                                                                                                                                      >  5:190958/1‑148 (MQ=255)         ggTCAATGTGCTGGAAGGCTTCCAGCGCGCCCAGTCAGGAGCCCGATAATGGTCCGACTCAAACGTCTGCTCGCCCCGTTCATCGCTGCCACCCTGTTCGCAGGCGCCCTGCATGCACAAGCCGAGCAGCGCACCCTGCGTGTATATaa                                                                                                                               <  1:210655/149‑1 (MQ=255)             aaTGTGCTGGAAGGCTTCCAGCGCGCCCAGTCAGGAGCCCGATAATGGTCCGACTCAAACGTCTGCTCGCCCCGTTCATCGCTGCCACCCTGTTCGCAGGCGCCCTGCATGCACAAGCCGAGCAGCGCACCCTGCGTGTATATAACTgg                                                                                                                           <  6:190958/149‑1 (MQ=255)              aTGTGCTGGAAGGCTTCCAGCGCGCCCAGTCAGGAGCCCGATAATGGTCCGACTCAAACGTCTGCTCGCCCCGTTCATCGCTGCCACCCTGTTCGCAGGCGCCCTGCATGCACAAGCCGAGCAGCGCACCCTGCGTGTATATAACTGGt                                                                                                                          <  2:319410/149‑1 (MQ=255)               tgtgCTTGAAGGCTTCCAGCGCGCCCAGTCAGGAGCCCGATAATGGTCCGACTCAAACGTCTGCTCGCCCCGTTCATCGCTGCCACCCTGTTCGCAGGCGCCCTGCATGCACAAGCCGAGCAGCGCACCCTGCGTGta                                                                                                                                    <  7:150971/138‑1 (MQ=255)               tgtgCTGGAAGGCTTCCAGCGCGCCCAGTCAGGAGCCCGATAATGGTCCGACTCAAACGTCTGCTCGCCCCGTTCATCGCTGCCACCCTGTTCGCAGGCGCCCTGCATGCACAAGCCGAGCAGCGCACCCTGCGTGTATATAACTGGtt                                                                                                                         <  1:216796/149‑1 (MQ=255)               tgtgCTGGAAGGCTTCCAGCGCGCCCAGTCAGGAGCCCGATAATGGTCCGACTCAAACGTCTGCTCGCCCCGTTCATCGCTGCCACCCTGTTCGCAGGAGCCCTGCATGCACAAGCCGAGCAGCGCACCCTGCGTGTATATAACTGGtt                                                                                                                         >  1:170450/1‑149 (MQ=255)                    tGGAAGGCTTCCAGCGCGCCCAGTCAGGAGCCCGATAATGGTCCGACTCAAACGTCTGCTCGCCCCGTTCATCGCTGCCACCCTGTTCGCAGGCGCCCTGCATGCACAAGCCGAGCAGCGCACCCTGCGTGTATATAACTGGTTCGAt                                                                                                                     >  1:250555/1‑148 (MQ=255)                              ccAGCGCGCCCAGTCAGGAGCCCGATAATGGTCCGACTCAAACGTCTGCTCGCCCCGTTCATCGCTGCCACCCTGTTCGCAGGCGCCCTGCATGCACAAGCCGAGCAGCGCACCCTGCGTGTATATAACTGGTTCGATTACATCAccc                                                                                                           >  2:231866/1‑148 (MQ=255)                                 gcgcgcCCAGTCAGGAGCCCGATAATGGTCCGACTCAAACGTCTGCTCGCCCCGTTCATCGCTGCCACCCTGTTCGCAGGCGCCCTGCATGCACAAGCCGAGCAGCGCACCCTGCGTGTATATAACTGGTTCGATTACATCACCCcaca                                                                                                       <  3:129280/149‑1 (MQ=255)                                      cccAGTCAGGAGCCCGATAATGGTCCGACTCAAACGTCTGCTCGCCCCGTTCATCGCTGCCACCCTGTTCGCAGGCGCCCTGCATGCACAAGCCGAGCAGCGCACCCTGCGTGTATATAACTGGTTCGATTACATCACCCCACAGACCt                                                                                                  <  1:231866/149‑1 (MQ=255)                                       ccAGTCAGGAGCCCGATAATGGTCCGACTCAAACGTCTGCTCGCCCCGTTCATCGCTGCCACCCTGTTCGCAGGCGCCCTGCATGCACAAGCCGAGCAGCGCACCCTGCGTGTATATAACTg                                                                                                                            <  4:291959/122‑1 (MQ=255)                                       ccAGTCAGGAGCCCGATAATGGTCCGACTCAAACGTCTGCTCGCCCCGTTCATCGCTGCCACCCTGTTCGCAGGCGCCCTGCATGCACAAGCCGAGCAGCGCACCCTGCGTGTATATAACTg                                                                                                                            >  3:291959/1‑122 (MQ=255)                                       ccAGTCAGGAGCCCGATAATCGTCCGACTCAAACGTCTGCACGCCCCCTTCATCGCTGCCACCCTGTTCCCAGGCGACCTGCAAGCACAAGCCCAGCAGCGCACCCAGCGACTATATAACTCGTTCGATTACATCACCCCACAGcccat                                                                                                 >  2:297625/1‑147 (MQ=255)                                              ggAGCCCGATAATGTTCCGACTCAAACGTCTGCTCGCCCCGTTCATCTCTGCCACCCTGTTCGCAGGCGCCCTGCATGCACAAGCCGAGCAGCGCACCCTGCGTGTATATAACTGGTTCGATTACATCACCCCACAGACCTTGACTGcc                                                                                          <  4:51738/149‑1 (MQ=255)                                              gctgtccttctggaaggcagtcaaggtctgtggggtgatgtaatcgaaccagttatatacaCGCAGGCGCCCTGCATGCACAAGCCGAGCAGCGCACCCTGCGTGta                                                                                                                                    >  1:338924‑M1/62‑107 (MQ=255)                                              gctgtccttctggaaggcagtcaaggtctgtggggtgatgtaatcgaaccagttatatacaCGCAGGCGCCCTGCATGCACAAGCCGAGCAGCGCACCCTGCGTGta                                                                                                                                    <  2:338924‑M1/46‑1 (MQ=255)                                                 gCCCGATAATGGTCCGACTCAAACGTCTGCTCGCCCCGTTCATCGCTGCCACCCTGTTCGCAGGCGCCCTGCATGCACAAGCCGAGCAGCGCACCCTGCGTGTATATAACTGGTTCGATTACATCACCCCACAGACCTTGACTGCCTTc                                                                                       <  4:176335/149‑1 (MQ=255)                                                  cccGATAATGGTCCGACTCAAACGTCTGCTCGCCCCGTTCATCGCTGCCACCCTGTTCGCAGGCGCCCTGCATGCACACGCCGAGCAGCGCACCCTGCGTGTATATAACTGGTTCGATTACATCACCCCACAGCCCTTGACTGCCTTc                                                                                       >  7:137230/1‑148 (MQ=255)                                                     gATAATGGTCCGACCCAAACGTCGGCTCGCCCCGTTCATCGCTG‑CACCCTGTTCGCAGGCGCCCTGCATGCACAAGCCGAGCAGCGCACCCTGCGTGTATATAACTGGTTCGATTACATCACCCCACAGACCTTGACTGCCTTCCAGaa                                                                                  <  2:95600/149‑1 (MQ=255)                                                      aTAATGGTCCGACTCAAACGTCTGCTCGCCCCGTTCATCGCTGCCACCCTGTTCGCAGGCGCCCTGCATGCACAAGCCGAGCAGCGCACCCTGTGTGTATATAACTGGTTCGATTACATCACCCCACAGACCTTGACTGCCTTCCAGaa                                                                                  <  8:6740/149‑1 (MQ=255)                                                       tAATGGTCCGACTCAAACGTCTGCTCGCCCCGTTCATCGCTGCCACCCTGTTCGCAGGCGCCCTGCATGCACAAGCCGAGCAGCGCACCCTGCGTGTATATAACTGGTTCGATTACATCACCCCACAGACCTTGACTGCCTTCCAGAAg                                                                                 <  3:130640/149‑1 (MQ=255)                                                                  cTCAAACGTCTGCTCTCCCCGTTCATCGCTGCCACCCTGTTCGCAGGCGCCCTGCATGCACAAGCCGAGCAGCGCACCCTGCGTGTATATAACTGGTTCGATTACATCACCCCACAGACCTTGACTGCCTTCCAGAAGGa                                                                               <  7:219299/140‑1 (MQ=255)                                                                  cTCAAACGTCTGCTCGCCCCGTTCATCGCTGCCACCCTGTTCGCAGGCGCCCTGCATGCACAAGCCGAGCAGCGCACCCTGCGTGTATATAACTGGTTCGATTACATCACCCCACAGACCTTGACTGCCTTCCAGAAGGACAGCGGCGt                                                                      <  1:306952/149‑1 (MQ=255)                                                                  cTCAAACGTCTGCTCGCCCCGTTCATCGCTGCCACCCTGTTCGCAGGCGCCCTGCATGCACAAGCCGAGCAGCGCACCCTGCGTGTATATAACTGGTTCGATTACATAACCCCACAAACATAGACTGCATTAAAGAACGACAgaaaca                                                                       >  8:219299/1‑143 (MQ=255)                                                                   tCAAACGTCTGCTCGCCCCGTTCATCGCTGCCACCCTGTTCGCAGGCGCCCTGCATGCACAAGCCGAGCAGCGCACCCTGCGTGTATATAACTGGTTCGATTACATCACCCCACAGACCTTGACt                                                                                             <  7:286818/125‑1 (MQ=255)                                                                   tCAAACGTCTGCTCGCCCCGTTCATCGCTGCCACCCTGTTCGCAGGCGCCCTGCATGCACAAGCCGAGCAGCGCACCCTGCGTGTATATAACTGGTTCGATTACATCACCCCACAGACCTTGACt                                                                                             >  8:286818/1‑125 (MQ=255)                                                                   tCAAACGTCTGCTCGCCCCGTTCATCGCTGCCACCCTGTTCGCAGGCGCCCTGCATGCACAAGCCGAGCAGCGCACCCTGCGTGTATATAACTGGTTCGATTACATCACCCCACAGACCTTGACTGCCTTCCAGAAGGACAGCGGCGt                                                                      >  3:22889/1‑148 (MQ=255)                                                                    cAAACGTCTGCTCGCCCCGTTCATCGCTGCCACCCTGTTCGCAGGCGCCCTGCATGCACAAGCCGAGCAGCGCACCCTGCGTGtata                                                                                                                                  <  7:210940/87‑1 (MQ=255)                                                                    cAAACGTCTGCTCGCCCCGTTCATCGCTGCCACCCTGTTCGCAGGCGCCCTGCATGCACAAGCCGAGCAGCGCACCCTGCGTGtata                                                                                                                                  >  8:210940/1‑87 (MQ=255)                                                                     aaaCGTCTGCTCGCCCCGTTCATCGCTGCCACCCTGTTCGCAGGCGCCCTGCATGCACAAGCCGAGCAGCGCACCCTGCGTGTATATAACTGGTTCGATTACATCACCCCACAGACCTTGACTGCCTTCCAGAAGGACAGCGGCGTg                                                                     <  2:170450/147‑1 (MQ=255)                                                                         ggcTGCTCGCCCCGTTCCTCGCTTCCCCCCTGTTCGCAGGCGCCCTGCATGCACAAGCCGAGCAGCGCACCCTGCGTGTATATAACTGGTTCGATTACATCACCCCACAGACCTTGACTGCCTTCCAGAAGGACAGCGGCGTGAAGCTg                                                               <  8:137230/147‑1 (MQ=255)                                                                                 gCCCCGTTCATCGCTGCCACCCTGTTCGCAGGCGCCCTGCATGCACAAGCCGAGCAGCGCACCCTGCGTGTATATAACTGGTTCGATTACATCACCCCACAGACCTTGACTGCCTTCCAGAAGGACAGCGGCGTGAAGCTGGTGTAc                                                         <  2:250555/147‑1 (MQ=255)                                                                                         cATCGCTGCCACCCTGTTCGCAGGCGCCCTGCATGCACAAGCCGAGCAGCGCACCCTGCGTGTATATAACTGGTTCGATTACATCACCCCACAGACCTTGACTGCCTTCCAGAAGGACAGCGGCGTGAAGCTGGTGTACGACATCTTc                                                <  3:256661/148‑1 (MQ=255)                                                                                                      cTGTTCGCAGGCGCCCTGCATGCACAAGCCGAGCAGCGCACCCTGCGTGTATATAACTGGTTCGATTACATCACCCCACAGACCTTGACTGCCTTCCAGAAGGACAGCGGCGTGAAGCTGGTGTACGACATCtt                                                 <  2:323728/134‑1 (MQ=255)                                                                                                      cTGTTCGCAGGCGCCCTGCATGCACAAGCCGAGCAGCGCACCCTGCGTGTATATAACTGGTTCGATTACATCACCCCACAGACCTTGACTGCCTTCCAGAAGGACAGCGGCGTGAAGCTGGTGTACGACATCtt                                                 >  1:323728/1‑134 (MQ=255)                                                                                                       tacacgcagggtgcgctgctcggcttgtgcatgcagggcgcctgcgTGTATATAACTGGTTCGATTACATCACCCCACAGACCTTGACTGCCTTCCAGAAGGACAgc                                                                           >  1:338924‑M2/47‑107 (MQ=255)                                                                                                       tacacgcagggtgcgctgctcggcttgtgcatgcagggcgcctgcgTGTATATAACTGGTTCGATTACATCACCCCACAGACCTTGACTGCCTTCCAGAAGGACAgc                                                                           <  2:338924‑M2/61‑1 (MQ=255)                                                                                                            GCAGGCGCCCTGCATGCACAAGCCGAGCAGCGCACCCTGCGTGTATATAACTgg                                                                                                                           >  1:131273‑M1/1‑54 (MQ=255)                                                                                                            GCAGGCGCCCTGCATGCACAAGCCGAGCAGCGCACCCTGCGTGTATATAACTgg                                                                                                                           <  2:131273‑M1/54‑1 (MQ=255)                                                                                                              agggtgcgctgctcggcttgtgcatgcagggcgcctgcgTGTATATAACTGGTTCGATTACATCACCCCACAGACCTTGACTGCCTTCCAGAAGGACAGCGGCGTGAAGCTGGTGTACGACATCTTCGACACCAACGAGGCGCTGGAAg                          >  1:224290‑M2/40‑149 (MQ=255)                                                                                                                  gcCCTGCATGCACAAGCCGAGCAGCGCACCCTGCGTGTATATAACTGGTTCGATTACATCACCCCACAGACCTTGACTGCCTTCCAGAAGGACAGCGGCGTGAAGCTGGTGTACGACATCTTCGACACCAACGAGGCGCTGGAAGCCaa                      <  6:158260/149‑1 (MQ=255)                                                                                                                  gcCCTGCATGCACAAGCCGAGCAGCGCACCCTGCGTGTATATAACTGGTTCGATTACATCACCCCACAGACCTTGACTGCCTTCCAGAAGGACAGCGGCGTGAAGCTGGTGTACGACATCTTCGACACCAACGAGGCGCTGGAAGCCaa                      <  4:22889/149‑1 (MQ=255)                                                                                                                     cTGCATGCACAAGCCGAGCAGCGCACCCTGCGTGTATATAACTGGTTCGATTACATCACCCCACAGACCTTGACTGCCTTCCAGAAGGACAGCGGCGTGAAGCTGGTGTACGACATCTTCGACACCAACGAGGCGCTGGAAGCCAAgct                   >  6:13355/1‑149 (MQ=255)                                                                                                                         atgcaCAAGCCGAGCAGCGCACCCTGCGTGTATATAACTGGTTCGATTACATCACCCCACAGACCTTGACTGCCTTCCAGAAGGACAGCGGCGTGAAGCTGGTGTACGACATCTTCGACACCAACGAGGCGCTGGAAGCCAAgctgct                >  3:143320/1‑148 (MQ=255)                                                                                                                             acaAGCCGAGCAGCGCACCCTGCGTGTATATAACTGGTTCGATTACATCACCCCACAGACCTTGACTGCCTTc                                                                                       <  8:211183/73‑1 (MQ=255)                                                                                                                             acaAGCCGAGCAGCGCACCCTGCGTGTATATAACTGGTTCGATTACATCACCCCACAGACCTTGACTGCCTTc                                                                                       >  7:211183/1‑73 (MQ=255)                                                                                                                                 gCCGAGCAGCGCACCCTGCGTGTATATAACTGGTTCGATTACATCACCCCACAGACCTTGACTGCCTTCCAGAAGGACAGCGGCGTGAAGCTGGTGTACGACATCTTCGACACCAACGAGGCGCTGGAAGCCAAgctgc                 <  6:113401/139‑1 (MQ=255)                                                                                                                                 gCCGAGCAGCGCACCCTGCGTGTATATAACTGGTTCGATTACATCACCCCACAGACCTTGACTGCCTTCCAGAAGGACAGCGGCGTGAAGCTGGTGTACGACATCTTCGACACCAACGAGGCGCTGGAAGCCAAgctgc                 >  5:113401/1‑139 (MQ=255)                                                                                                                                      tgcagggcgcctgcgTGTATATAACTGGTTCGATTACATCACCCCACAGACCTTGACTGCCTTCCAGAAGGACAGCGGCGTGAAGCTGGTGTACGACATCTTCGACACCAACGAGGCGCTGGAAGCCAAGCTGCTGACCGGCAACTCCg  <  2:224290‑M2/134‑1 (MQ=255)                                                                                                                                             aCCCTGCGTGTATATAACTGGTTCGATTACATCACCCCACAGACCTTGACTGCCTTCCAGAAGGACAGCGGCGTGAAGCTGGTGTACGACATCTTCGACACCAACGAGGCGCTGGAAGCCAAGCTGCTGACCgg          >  4:113097/1‑134 (MQ=255)                                                                                                                                             aCCCTGCGTGTATATAACTGGTTCGATTACATCACCCCACAGACCTTGACTGCCTTCCAGAAGGACAGCGGCGTGAAGCTGGTGTACGACATCTTCGACACCAACGAGGCGCTGGAAGCCAAGCTGCTGACCgg          <  3:113097/134‑1 (MQ=255)                                                                                                                                               cctgcgTGTATATAACTGGTTCGATTACATCACCCCACAGACCTTGACTGCCTTCCAGAAGGACAGCGGCGTGAAGCTGgt                                                             <  6:97311‑M2/75‑1 (MQ=255)                                                                                                                                               cctgcgTGTATATAACTGGTTCGATTACATCACCCCACAGACCTTGACTGCCTTCCAGAAGGACAGCGGCGTGAAGCTGgt                                                             >  5:97311‑M2/7‑81 (MQ=255)                                                                                                                                                     |                                                                                                                                      ATCAACGCGGTCAATGTGCTGGAAGGCTTCCAGCGCGCCCAGTCAGGAGCCCGATAATGGTCCGACTCAAACGTCTGCTCGCCCCGTTCATCGCTGCCACCCTGTTCGCAGGCGCCCTGCATGCACAAGCCGAGCAGCGCACCCTGCGTGTATATAACTGGTTCGATTACATCACCCCACAGACCTTGACTGCCTTCCAGAAGGACAGCGGCGTGAAGCTGGTGTACGACATCTTCGACACCAACGAGGCGCTGGAAGCCAAGCTGCTGACCGGCAACTCCG  >  NC_002947/6088766‑6089047

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.