New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3787977	34 (0.530)	39 (0.610) +CCAACTGT	33/246	1.2	52.7%	coding (658/1392 nt)	PP_3350	hypothetical protein
	?	NC_002947	3787978 =	38 (0.560)					coding (657/1392 nt)	PP_3350	hypothetical protein

CGCTGCTCGTCACCCGACTCGCCGGCCAGGGTGCGGTCGTCGGTTTCCAGGCCAAAGGCTAGCAGGTCCATGTTCCACGACGCCGACAGCGGCAAGGTGCCGTAGAGGCCGTAGAATTTGATGTTGTTGTTGCTGCCATCGTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3787835‑3787977 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CCAACTGTCTTCACCGGTTTTCAGCGGGCGCACAGCGAATGCATCCAGCTTGCGTCCGTCCTTGAGGTTGAGGCTGGCGCGCACGCCGTCGAAGCTCAGGCGGATGTTCGGCGCGTCGCGGTAGGTGACCAACACCTGGTCGCCGAAG  >  NC_002947/3787978‑3788125                                                                                                                                                ||||||||                                                                                                                                                     CGCTGCTCGTCACCCGACTCGCCGGCCAGGGTGCGGTCGTCGGTTTCCAGGCCAAAGGCTAGCAGGTCCATGTTCCACGACGCCGACAGCGGCAAGGTGCCGTAGAGGCCGTAGAATTTGATGTTGTTGTTGCTGCCATCGTCCCAACT                                                                                                                                                        <  2:392950/149‑1  GCTGCTCGTCACCCGACTCGCCGGCCAGGGTGCGGTCGTCGGTTTCCAGGCCAAAGGCTAGCAGGTCCATGTTCCACGACGCCGACAGCGGCAAGGTGCCGTAGAGGCCGTAGAATTTGATGTTGTTGTTGCTGCCATCGTCCCAACTG                                                                                                                                                       >  1:19887/1‑149   CTGCTCGTCACCCGACTCGCCGGCCAGGGTGCGGTCGTCGGTTTCCAGGCCAAAGGCTAGCAGGTCCATGTTCCACGACGCCGACAGCGGCAAGGTGCCGTAGAGGCCGTAGAATTTGATGTTGTTGTTGCTGCCATCGTCCCAACTGT                                                                                                                                                      <  6:420069/149‑1      CTCGTCACCCGACTCGCCGGCCAGGGTGCGGTCGTCGGTTTCCAGGCCAAAGGCTAGCAGGTCCATGTTCCACGACGCCGACAGCGGCAAGGTGCCGTAGAGGCCGTAGAATTTGATGTTGTTGTTGCTGCCATCGTCCCAACTGTC                                                                                                                                                     <  5:243803/147‑1              CCGACTCGCCGGCCAGGGTGCGGTCGTCGGTTTCCAGGCCAAAGGCTAGCAGGTCCATGTTCCACGACGCCGACAGCGGCAAGGTGCCGTAGAGGCCGTAGAATTTGATGTTGTTGTTGCTGCCATCGTCCCAACTGTCCAACTGTCTT                                                                                                                                           <  1:239703/149‑1              CCGACTCGCCGGCCAGGGTGCGGTCGTCGGTTTCCAGGCCAAAGGCTAGCAGGTCCATGTTCCACGACGCCGACAGCGGCAAGGTGCCGTAGAGGCCGTAGAATTTGATGTTGTTGTTGCTGCCATCGTCCCAACTGTCCAACTGTCTT                                                                                                                                           >  1:70421/1‑149                     GCCGGCCAGGGTGCGGTCGTCGGTTTCCAGGCCAAAGGCTAGCAGGTCCATGTACCACGACGCCGACAGCGGCAAGGTGCCGTAGAGG‑CGTAGAATTTGATGTTGTTGTTGCTGCCATCGTCCCAACTGTCCAACTGTCTTCACCGGTT                                                                                                                                   >  8:184125/1‑149                      CCGGCCAGGGTGCGGTCGTCGGTTTCCAGGCCAAAGGCTAGGAGGTCCATGTTCCACGACGCCGACAGCGGCAAGGTGCCGTAGAGGCCGTAGAATTTGATGTTGTTGTTGCTGCCATCGTCCCAACTGTCCAACTGTCTTCACCGGTT                                                                                                                                   <  2:70421/149‑1                              GGTGCGGTCGTCGGTTTCCAGGCCAAAGGCTAGCAGGTCCATGTTCCACGACGCCGACAGCGGCAAGGTGCCGTAGAGGCCGTAGAATTTGATGTTGTTGTTGCTGCCATCGTCCCAACTGTCCAACTGTCTTCACCGGTTTTCAGCGG                                                                                                                           >  5:413364/1‑149                                    GTCGTCGGTTTCCAGGCCAAAGGCTAGCAGGTCCATGTTCCACGACGCCGACAGCGGCAAGGTGCCGTAGAGGCCGTAGAATTTGATGTTGTTGTTGCTGCCATCGTCCCAACTGTCCAACTGTCTTCACCGGTTTTCAGCGGGCGCAC                                                                                                                     <  1:411510/149‑1                                         CGGTTTCCAGGCCAAAGGCTAGCAGGTCCATGTACCACGACGCCGACAGCGGCAAGGTGCCGTAGAGG‑CGTAGAATTTGATGTTGTTGTTGCTGCCATCGTCCCAACTGTCCAACTGTCTTCACCGGTTTTCAGCGGGCGCACAGCGAA                                                                                                               <  7:184125/149‑1                                                  GGCCAAAGGCTAGCAGGTCCATGTTCCACGACGCCGACAGCGGCAAGGTGCCGTAGAGGCCGTAGAATTTGATGTTGTTGTTGCTGCCATCGTCCCAACTGTCCAACTGTCTTCACCGGTTTTCAGCGGGCGCACAGCGAATGCATC                                                                                                         >  8:127777/1‑147                                                      AAAGGCTAGCAGGTCCATGTTCCACGACGCCGACAGCGGCAAGGTGCCGTAGAGGCCGTAGAATTTGATGTTGTTGTTGCTGCCATCGTCCCAACTGTCCAACTGTCTTCACCGGTTTTCAGCGGGCGCACAGCGAATGCATCCAGCTT                                                                                                   >  6:201810/1‑149                                                         GGCTAGCAGGTCCATGTTCCACGACGCCGACAGCGGCAAGGTGCCGTAGAGGCCGTAGAATTTGATGTTGTTGTTGCTGCCATCGTCCCAACTGTCCAACTGTC                                                                                                                                             <  2:292605/104‑1                                                         GGCTAGCAGGTCCATGTTCCACGACGCCGACAGCGGCAAGGTGCCGTAGAGGCCGTAGAATTTGATGTTGTTGTTGCTGCCATCGTCCCAACTGTCCAACTGTC                                                                                                                                             >  7:200454/1‑104                                                         GGCTAGCAGGTCCATGTTCCACGACGCCGACAGCGGCAAGGTGCCGTAGAGGCCGTAGAATTTGATGTTGTTGTTGCTGCCATCGTCCCAACTGTCCAACTGTC                                                                                                                                             <  8:200454/104‑1                                                         GGCTAGCAGGTCCATGTTCCACGACGCCGACAGCGGCAAGGTGCCGTAGAGGCCGTAGAATTTGATGTTGTTGTTGCTGCCATCGTCCCAACTGTCCAACTGTC                                                                                                                                             >  1:292605/1‑104                                                          GCTAGCAGGTCCATGGTCCACGACGCCGACAGCGGCAAGGTGCCGTAGAGTCCGTAGAATTTGATGTTGTTGTTGCTGCCATCGTCCCAACTGTCCAACTGTCTTCACCGGTTTTCAGCGGGCGCACAGCGAATGCATCCAGCTTGCGT                                                                                               <  5:24415/149‑1                                                            TAGCAGGTCCATGTTCCACGACGCCGACAGCGGCAAGGTGCCGTAGAGGCCGTAGAATTTGATGTTGTTGTTGCTGCCATCGTCCCAACTGTCCAACTGTCTTCACCGGTTTTCAGCGGGCGCACAGCGAAT                                                                                                              >  6:280344/1‑132                                                            TAGCAGGTCCATGTTCCACGACGCCGACAGCGGCAAGGTGCCGTAGAGGCCGTAGAATTTGATGTTGTTGTTGCTGCCATCGTCCCAACTGTCCAACTGTCTTCACCGGTTTTCAGCGGGCGCACAGCGAAT                                                                                                              <  5:280344/132‑1                                                                     CATGTTCCACGACGCCGACAGCGGCAAGGTGCCGTAGAGGCCGTAGAATTTGATGTTGTTGTTGCTGCCATCGTCCCAACTGTCCAACTGTCTTCACCGGTTTTCAGCGGGCGCACAGCGAATGCATCCAGCTTGCGTCCGTCCTTGAG                                                                                    >  5:183206/1‑149                                                                     CATGTTCCACGACGCCGACAGCGGCAAGGTGCCGTAGAGGCCGTAGAATTTGATGTTGTTGTTGCTGCCATCGTCCCAACTGTCCAACTGTCTTCACCGGTTTTCAGCGGGCGCACAGCGAATGCATCCAGCTTGCGTCCGTCCTTGA                                                                                     <  8:225239/148‑1                                                                            CACGACGCCGACAGCGGCAAGGTGCCGTAGAGGCCGTAGAATTTGATGTTGTTGTTGCTGCCATCGTCCCAACTGTCCAACTGTCTTCACCGGTTTTCAGCGGGCGCACAGCGAATGCATCCAGCTTGCGTCCGTCCTTGAGGTTGAGG                                                                             <  2:19887/149‑1                                                                            CACGACGCCGACAGCGGCAAGGTGCCGTAGAGGCCGTAGAATTTGATGTTGTTGTTGCTGCCATCGTCCCAACTGTCCAACTGTCTTCACCGGTTTTCAGCGGGCGCACA                                                                                                                    >  4:76136/1‑110                                                                            CACGACGCCGACAGCGGCAAGGTGCCGTAGAGGCCGTAGAATTTGATGTTGTTGTTGCTGCCATCGTCCCAACTGTCCAACTGTCTTCACCGGTTTTCAGCGGGCGCACA                                                                                                                    <  3:76136/110‑1                                                                             ACGACGCCGACAGCGGCAAGGTGCCGTAGAGGCCGTAGAATTTGATGTTGTTGTTGCTGCCATCGTCCCAACTGTCCAACTGTCTTCACCGGTTTTCAGCGGGCGCACAGCGAATGCATCCAGCTTGCGTCC                                                                                             >  5:167039/1‑132                                                                             ACGACGCCGACAGCGGCAAGGTGCCGTAGAGGCCGTAGAATTTGATGTTGTTGTTGCTGCCATCGTCCCAACTGTCCAACTGTCTTCACCGGTTTTCAGCGGGCGCACAGCGAATGCATCCAGCTTGCGTCC                                                                                             <  6:167039/132‑1                                                                               GACGCCGACAGCGGCAAGGTGCCGTAGAGGCCGTAGAATTTGATGTTGTTGTTGCTGCCATCGTCCCAACTGTCCAACTGTCTTCACCGGTTTTCAGCGGGCGCACAGCGAATGCATCCAGCTTGCGTCCGTCCTTGAGGTTGAGGCTG                                                                          >  8:178874/1‑149                                                                                       CAGCGGCAAGGTGCCGTAGAGGCCGTAGAATTTGATGTTGTTGTTGCTGCCATCGTCCCAACTGTCCAACTGTCTTCACCGGTTTTCAGCGGGCGCACAGCGAATGCATCCAGCTTGCGTCCGTCCTTGAGGTTGAGGCTGGCGCGCAC                                                                  <  5:201810/149‑1                                                                                                      GTAGAGGCCGTAGAATTTGATGTTGTTGTTGCTGCCATCGTCCCAACTGTCCAACTGTCTTCACCGGTTTTCAGCGGGCGCACAGCGAATGCATCCAGCTTGAGTCCGTCCTTGAGGTTGAGGCTGGCGCGCACGCCGTCGAAGCTCAG                                                   >  1:385019/1‑149                                                                                                               GTAGAATTTGATGTTGTTGTTGCTGCCATCGTCCCAACTGTCCAACTGTCTTCACCGGTTTTCAGCGGGCGCACAGCGAATGCATCCAGCTTGCGTCCGTCCTTGAGGTTGAGGCTGGCGCGCACGCCGTCGAAGCTCAGGCGGATGTT                                          >  7:306594/1‑149                                                                                                               GTAGAATTTGATGTTGTTGTTGCTGCCAACGTCCCAACTGTCCAACTGTCTTCACCGGTTTTCAGCGGGCGCACAGCGAATGCATCCAGCTTGCGTCCGTCCTTGAGGTTGAGGCTGGCGCGCACGCCGTCGAAGCTCAGGCGGATGTT                                          >  1:8413/1‑149                                                                                                                TAGAATTTGATGTTGTTGTTGCTGCCATCGTCCCAACTGTCCAACTGTCTTCACCGGTTTTCAGCGGGCGCACAGCGAATGCATCCAGCTTGCGTCCGTCCTTGAGGTTGAGGCTGGCGCGCACGCCGTCGAAGCTCAGGCGGATGTTC                                         >  5:68221/1‑149                                                                                                                  GAATTTGATGTTGTTGTTGCTGCCATCGTCCCAACTGTCCAACTGTCTTCACCGGTTTTCAGCGGGCGCACAGCGAATGCATCCAGCTTGCGTCCGTCCTTGAGGTTGAGGCTGGCGCGCACGCCGTCGAAGCTCAGGCGGATGTTCGG                                       <  7:127777/149‑1                                                                                                                              GTTGTTGCTGCCATCGTCCCAACTGTCCAACTGTCTTCACCGGTTTTCAGCGGGCGCACAGCGAATGCATCCAGCTTGCGTCCGTCCTTGAGGTTGAGGCTGGCGCGCACGCCGTCGAAGCTCAGGCGGATGTTCGGCGCGTCGCGGT                            <  7:178874/148‑1                                                                                                                              GTTGTTGCTGCCATCGTCCCAACTGTCCAACTGTCTTCACCGGTTTTCAGCGGGCGCACAGCGAATGCATCCAGCTTGCGTCCGTCCTTGAGGTTGAGGCTGGCGCGCACGCCGTCGAAGCTCAGGCGGATGTTCGGCGCGTCGCGG                             >  8:276043/1‑147                                                                                                                               TTGTTGCTGCCAACGTCCCAACTGTCCAACTGTCTTCACCGGTTTTCAGCGGGCGCACAGCGAATGCATCCAGCTTGCGTCCGTCCTTGAGGTTGAGGCTGGCGCGCACGCCGTCGAAGCTCAGGCGGATGTTCGGCGCGTCGCGGTAG                          <  2:8413/149‑1                                                                                                                                      TGCCATCGTCCCAACTGTCCAACTGTCTTCACCGGTTTTCAGCGGGCGCACAGCGAATGCATCCAGCTTGCGTCCGTCCTTGAGGTTGCGGCTGGCGCGCACGTCGTCGAAGCTCAGGCGGATGTTCGGCGCGTCGCGGTAGGTGACC                    >  7:304967/1‑148                                                                                                                                      TGCCATCGTCCCAACTGTCCAACTGTCTTCACCGGTTTTCAGCGGGCGCACAGCGAATGCATCCAGCTTGCGTCCGTCCTTGAGGTTGAGGCTGGCGCGCACGCCGTCGAAGCTCAGGCGGATGTTCGGCGCGTCGCGGTAGGTGACC                    >  4:69473/1‑148                                                                                                                                         CATCGTCCCAACTGTCCAACTGTCTTCACCGGTTTTCAGCGGGCGCACAGCGAATGCATCCAGCTTGCGTCCGTCCTTGAGGTTGAGGCTGGCGCGCACGCCGTCGAAGCTCAGGCGGATGTTCGGCGCGTCGCGGTAGGTGACCAACA                >  6:146912/1‑149                                                                                                                                          ATCGTCCCAACTGTCCAACTGTCTTCACCGGTTTTCAGCGGGCGCACAGCGAATGCATCCAGCTTGCGTCCGTCCTTGAGGTTGAGGCTGGCGCGCACGCCGTCGAAGCTCAGGCGGATGTTCGGCGCGTCGCGGTAGGTGACCAACAC               >  4:174754/1‑149                                                                                                                                                CCAACTGTCCAACTGTCTTCACCGGTTTTCAGCGGGCGCACAGCGAATGCATCCAGCTTGCGTCCGTCCTTGAGGTTGAGGCTGGCGCGCACGCCGTCGAAGCTCAGGCGGATGTTCGGCGCGTCGCGGTAGGTGACCAACACCTGGTC         <  8:306594/149‑1                                                                                                                                                 CAACTGTCCAACTGTCTTCACCGGTTTTCAGCGGGCGCACAGCGAATGCATCCAGCTTGCGTCCGTCCTTGAGGTTGAGGCTGGCGCGCACGCCGTCGAAGCTCAGGCGGATGTTCGGCGCGTCGCGGTAGGTGACCAACACCTGGTCG        <  7:184336/149‑1                                                                                                                                                  AACTGTCCAACTGTCTTCACCGGTTTTCAGCGGGCGCACAGCGAATGCATCCAGCTTGCGTCCGTCCTTGAGGTTGAGGCTGGCGCGCACGCCGTCGAAGCTCAGGCGGATGTTCGGCGCGTCGCGGTAGGTGACCAACACCTGGTCGC       >  5:239458/1‑149                                                                                                                                                       TCCAACTGTCTTCACCGGTTTTCAGCGGGCGCACAGCGAATGCATCCAGCTTGCGTCCGTCCTTGAGGTTGAGGCTGGCGCGCACGCCGTCGAAGCTCAGGCGGATGTTCGGCGCGTCGCGGTAGGTGACCAACACCTGGTCGCCGAAG  >  6:346862/1‑149                                                                                                                                                       TCCAACTGTCTTCACCGGTTTTCAGCGGGCGCACAGCGAATGCATCCAGCTTGCGTCCGTCCTTGAGGTTGAGGCTGGCGCGCACGCCGTCGAAGCTCAGGCGGATGTTCGGCGCGTCGCGGTAGGTGACCAACACCTGGTCGCCGAA   <  3:174754/148‑1                                                                                                                                                       TCCAACTGTCTTCACCGGTTTTCAGCGGGCGCACAGCGAATGCATCCAGCTTGCGTCCGTCCTTGAGGTTGAGGCTGGCGCGCACGCCGTCGAAGCTCAGGCGGATGTTCGGCGCGTCGCGGTAGGTGACCAACACCCGGTCGCCGAAG  <  7:130541/149‑1                                                                                                                                                ||||||||                                                                                                                                                     CGCTGCTCGTCACCCGACTCGCCGGCCAGGGTGCGGTCGTCGGTTTCCAGGCCAAAGGCTAGCAGGTCCATGTTCCACGACGCCGACAGCGGCAAGGTGCCGTAGAGGCCGTAGAATTTGATGTTGTTGTTGCTGCCATCGTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3787835‑3787977 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CCAACTGTCTTCACCGGTTTTCAGCGGGCGCACAGCGAATGCATCCAGCTTGCGTCCGTCCTTGAGGTTGAGGCTGGCGCGCACGCCGTCGAAGCTCAGGCGGATGTTCGGCGCGTCGCGGTAGGTGACCAACACCTGGTCGCCGAAG  >  NC_002947/3787978‑3788125

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.