| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 1088549 | 72 (0.980) | 7 (0.110) | 7/250 | 8.6 | 10.1% | intergenic (+45/‑209) | pmbA/PP_0943 | regulatory protease/hypothetical protein |
| ? | NC_002947 | = 1088586 | 60 (0.900) | intergenic (+82/‑172) | pmbA/PP_0943 | regulatory protease/hypothetical protein | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
ATGAAGGACATGTTCCAGCAGATTGTCGCGATCGGTAGCGATCTTGAAACCCGTAGCAATATTCATACGGGCTCGGTGTTGATCGAGCGGATGACCGTTGCTGGTAGCTGATCTTTAGCCTGCGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/1088394‑1088549‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aacccgctcctacaACGGCCTGTGTCCAACCCCGATGTACGTCCACCACCGTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCGCAGGCTAAAGATCAGCTACCAGCAACGGTCATCCGCTCGATCAACACCGAGCCCGTATGAATATTGCTACGGGTT < NC_002947/1088586‑1088441 ATGAAGGACATGTTCCAGCAGATTGTCGCGATCGGTAGCGATCTTGAAACCCGTAGCAATATTCATACGGGCTCGGTGTTGATCTAGCGGATGACCGTTGCTGGTAGCTGATCTTTAGCCTGCGCCGGCCCTTTCGCGGGTAAACCCGC > 2:268594/1‑149 AAGGACATGTTCCAGCAGATTGTCGCGATCGGTAGCGATCTTGAAACCCGTAGCAATATTCATACGGGCTCGGTGTTGATCGAGCGGATGACCGTTGCTGGTAGCTGATCTTTAGCCTGCGCCGGCCCTTTCGCGGGTAAACCCGCTCC < 5:248255/149‑1 AGGACATGTTCCAGCAGATTGTCGCGATCGGTAGCGATCTTGAAACCCGTAGCAATATTCATACGGGCTCGGTGTTGATCGAGCGGATGACCGTTGCTGGTAGCTGATCTTTAGCCTGCGCCGGCCCTTTCGCGGGTAAACCCGCTCCT < 5:287625/149‑1 GGACATGTTCCAGCAGATTGTCGCGATCGGTAGCGATCTTGAAACCCGTAGCAATATTCATACGGGCTCGGTGTTGATCGAGCGGATGACCGTTGCTGGTAGCTGATCTTTAGCCTGCGCCGGCCCTTTCGCGGGTAAACCCGCTCCTA > 1:247701/1‑149 GGACATGTTCCAGCAGATTGTCGCGATCGGTAGCGATCTTGAAACCCGTAGCAATATTCATACGGGCTCGGTGTTGATCGAGCGGATGACCGTTGCTGGTAGCTGATCTTTAGCCTGCGCCGGCCCTTTCGCGGGTAAACCCGCTCCTA > 5:401148/1‑149 GTTCCAGCAGATTGTCGCGATCGGTAGCGATCTTGAAACCCGTAGCAATATTCATACGGGCTCGGTGTTGATCGAGCGGATGACCGTTGCTGGTAGCTGATCTTTAGCCTGCGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAACGG > 2:155435/1‑149 CAGCAGATTGTCGCGATCGGTAGCGATCTTGAAACCCGTAGCAATATTCATACGGGCTCGGTGTTGATCGAGCGGATGACCGTTGCTGGTAGCTGATCTTTAGCCTGCGCCGGCCCTTTCGCGGGTGAACCCGCTCCTACAACGGCCTG > 2:207133/1‑149 TTGAAACCCGTAGCAATATTCATACGGGCTCGGTGTTGATCGAGCGGATGACCGTTGCTGGTAGCTGATCTTTAGCCTGCGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAACGGCCTGTGTCCAACCCCGATGTACGTCCACCACC > 7:10774/1‑149 CCCGTAGCAATATTCATACGGGCTCGGTGTTGATCGAGCGGATGACCGTTGCTGGTAGCTGATCTTTAGCCTGCGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAACGGCCTGTGTCCAACCCCGATGTACGTCCACCACCGTGTAG < 8:10774/149‑1 CGTAGCAATATTCATACGGGCTCGGTGTTGATCGAGCGGATGACCGTTGCTGGTAGCTGATCTTTAGCCTGCGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAACGGCCTGTGTCCAACCCCGATGTACGTCCACCACCGTGTAGGA < 1:155435/149‑1 TAGCAATATTCATACGGGCTCGGTGTTGATCGAGCGGATGACCGTTGCTGGTAGCTGATCTTTAGCCTGCGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACAACGGCCTGTGTCCAACCCCGATGTACGTCCACCACCGTGTAGGAGC < 7:344518/149‑1 CATACGGGCTCGGTGTTGATCGAGCGGATGACCGTTGCTGGTAGCTGATCTTTAGCCTGCGCCGGCCCTTTCGCGGGTGAACCCGCTCCTACAACGGCCTGTGTCCAACCCCGATGTACGTCCACCACCGTGTAGGAGCGGGTTTACC < 1:207133/148‑1 AACCCGCTCCTACAACGGCCTGTGTCCAACCCCGATGTACGTCCACCACCGTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCGCAGGCTAAAGATCAGCTACCAGCAACGGTCATCCGCTCGATCAACACCGAGCCCGTATGAATAT > 8:341319/1‑149 CCCGCTCCTACAACGGCCTGTGTCCAACCCCGATGTACGTCCACCACCGTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCGCAGGCTAAAGATCAGCTACCAGCAACGGTCATCCGCTCGATCAACACCGAGCCCGTATGAATATTG > 5:423820/1‑149 CTACAACGGCCTGTGTCCAACCCCGATGTACGTCCACCACCGTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCGCAGGCTAAAGATCAGCTACCAGCAACGGTCATCCGCTCGATCAACACCGAGCCCGTATGAATATTGCTACGGG > 3:20962/1‑149 TACAACGGCCTGTGTCCAACCCCGATGTACGTCCACCACCGTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCGCAGGCTAAAGATCAGCTACCAGCAACGGTCATCCGCTCGATCAACACCGAGCCCATATGAATATTGCTACGGGT > 3:390799/1‑149 CAACGGCCTGTGTCCAACCCCGATGTACGTCCACCACCGTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCGCAGGCTAAAGATCAGCTACCAGCAACGGTCATCCGCTCGATCAACACCGAGCCCGTATGAATATTGCTACGGGTT > 8:57025/1‑148 ATGAAGGACATGTTCCAGCAGATTGTCGCGATCGGTAGCGATCTTGAAACCCGTAGCAATATTCATACGGGCTCGGTGTTGATCGAGCGGATGACCGTTGCTGGTAGCTGATCTTTAGCCTGCGCCGGCCCTTTCGCGGGTAAACCCGCTCCTACA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/1088394‑1088549‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aacccgctcctacaACGGCCTGTGTCCAACCCCGATGTACGTCCACCACCGTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCGCAGGCTAAAGATCAGCTACCAGCAACGGTCATCCGCTCGATCAACACCGAGCCCGTATGAATATTGCTACGGGTT < NC_002947/1088586‑1088441 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |