New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	594420 =	62 (1.050)	6 (0.110)	5/252	NT	8.7%	coding (342/513 nt)	PP_0505	hypothetical protein
	?	NC_002947	594448 =	66 (1.170)					coding (314/513 nt)	PP_0505	hypothetical protein

TCCTGCTGGTCCCTTACTATGGCGCGTGCATCCACGTGCCGCCGCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/594466‑594420 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgccaTAGTAAGGGACCAGCAGGAATTCGGTGGTGCGGCCTTCTTCGCTGACCTCCAGTGGCACGATGTAGCCGGGAAGTTTGACCTGTTGGCCGTCGAGGCTTTTTACCACTGGCGCGTCGGGCGCCTGCTGGCGC  >  NC_002947/594448‑594579                                                                                                                                                                                     TCCTGCTGGTCCCTTACTATGGCGCGTGCATCCACGTGCCGCCGCCATAGTAAGGGACAAGCAGGAATTCGGTGGTGCGGCCTTCTTCGCTGACCTCCAGTGGCACGATGTAGCCGGGAAGTTTGACCTGTTGGCCGTCGAGGCTTTT                                 >  6:321345/1‑148                    TGGCGCGTGCATCCACGTGCCGCCGCCATAGTAAGGGACCAGCAGGAATTCGGTGGTGCGGCCTTCTTCGCTGACCTCCAGTGGCACGATGTAGCCGG                                                                <  5:118264/98‑1                    TGGCGCGTGCATCCACGTGCCGCCGCCATAGTAAGGGACCAGCAGGAATTCGGTGGTGCGGCCTTCTTCGCTGACCTCCAGTGGCACGATGTAGCCGG                                                                >  6:118264/1‑98                    TGGCGCGTGCATCCACGTGCCGCCGCCATAGTAAGGGACCAGCAGGAATTCGGTGGTGCGGCCTTCTTCGCTGACCTCCAGTGGCACGATGTA                                                                     <  1:175577/93‑1                    TGGCGCGTGCATCCACGTGCCGCCGCCATAGTAAGGGACCAGCAGGAATTCGGTGGTGCGGCCTTCTTCGCTGACCTCCAGTGGCACGATGTA                                                                     >  2:175577/1‑93                               TCCACGTGCCGCCGCCATAGTAAGGGACCAGCAGGAATTCGGTGGTGCGGCCTTCTTCGCTGACCTCCAGTGGCACGATGTAGCCGGGAAGTTTGACCTGTTGGCCGTCGAGGCTTTTTACCACTGGCGCGTCGGGCGCCTGCTGGCGC  <  5:321345/149‑1                                                                                                                                                                                     TCCTGCTGGTCCCTTACTATGGCGCGTGCATCCACGTGCCGCCGCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/594466‑594420 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgccaTAGTAAGGGACCAGCAGGAATTCGGTGGTGCGGCCTTCTTCGCTGACCTCCAGTGGCACGATGTAGCCGGGAAGTTTGACCTGTTGGCCGTCGAGGCTTTTTACCACTGGCGCGTCGGGCGCCTGCTGGCGC  >  NC_002947/594448‑594579

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.