| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 619998 = | 72 (1.220) | 4 (0.070) | 4/250 | NT | 5.6% | coding (692/693 nt) | PP_0534 | transcriptional regulator PfeR |
| ? | NC_002947 | 620048 = | 67 (1.190) | coding (642/693 nt) | PP_0534 | transcriptional regulator PfeR | |||||
ACTGGACCGAGGCCTGGATGTGCATGTGTGCAACCTGCGCCGCAAACTGGCCGACATCAATGCCCAGCACCTGCAGATCCAGGCCGTGCGTGGCCAAGGGTACATCCTGGTCGACACGGAGCAGGCCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/620126‑619998‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcctgGATCTGCAGGTGCTGGGCATTGATGTCGGCCAGTTTGCGGCGCAGGTTGCACACATGCACATCCAGGCCTCGGTCCAGTCGGGTATAGGCCCTGTGCAGCACGGTCTGGTACAGGAAGGGCTTGCTCAACGCTTCGTCGGGGTGG > NC_002947/620048‑620192 ACTGGACCGAGGCCTGGATGTGCATGTGTGCAACCTGCGCCGCAAACTGGCCGACATCAATGCCCAGCACCTGCAGATCCAGGCCGTGCGTGGCCAAGGGTACATCCTGGTCGACACGGAGCAGGCC < 7:14356/127‑1ACTGGACCGAGGCCTGGATGTGCATGTGTGCAACCTGCGCCGCAAACTGGCCGACATCAATGCCCAGCACCTGCAGATCCAGGCCGTGCGTGGCCAAGGGTACATCCTGGTCGACACGGAGCAGGCC > 8:14356/1‑127 TCCAGGCCGTGCGTGGCCAAGGGTACATCCTGGTCGACACGGAGCAGGCCTGGATCTGCAGGTGCTGGGCATTGATGTCGGCCAGTTTGCGGCGCAGGTTGCACACATGCACATCCAGGCCTCGGTCCAGTCGGGTATAGGCCCTGTG > 7:30940/1‑148 CAGGCCGTGCGTGGCCAAGGGTACATCCTGGTCGACACGGAGCAGGCCTGGATCTGCAGGTGCTGGGCATTGATGTCGGCCAGTTTGCGGCGCAGGTTGCACACATGCACATCCAGGCCTCGGTCCAGTCGGGTATAGGCCCTGTGCAG < 8:30940/149‑1 CAGGCCGTGCGTGGCCAAGGGTACATCCTGGTCGACACGGAGCAGGCCTGGATCTGCAGGTGCTGGGCATTGATGTCGGCCAGTTTGCGGCGCAGGTTGCACACATGCACATCCAGGCCTCGGTCCAGTCGGGTATAGGCCCGGTGCAG > 6:352825/1‑149 TCGACACGGAGCAGGCCTGGATCTGCAGGTGCTGGGCATTGATGTCGGCCAGTTTGCGGCGCAGGTTGCACACATGCACATCCAGGCCTCGGTCCAGTCGGGTATAGGCCCCGTGCAGCACGGTCTGGTACAGGAAGGGCTTGCTCAAC < 5:352825/149‑1 GCCTGGATCTGCAGGTGCTGGGCATTGATGTCGGCCAGTTTGCGGCGCAGGTTGCACACATGCACATCCAGGCCTCGGTCCAGTCGGGTATAGGCCCTGTGCAGCACGGTCTGGTACAGGAAGGGCTTGCTCAACGCTTCGTCGGGGTG > 5:305606/1‑149 CCTGGATCTGCAGGTGCTGGGCATTGATGTCGGCCAGTTTGCGGCGCAGGTTGCACACATGCACATCCAGGCCTCGGTCCAGTCGGGTATAGGCCCTGTGCAGAACGGTCTGGTACAGGAAGGGCTTGCTCAACGCTTCGTCGGGGTGG > 1:129872/1‑149 ACTGGACCGAGGCCTGGATGTGCATGTGTGCAACCTGCGCCGCAAACTGGCCGACATCAATGCCCAGCACCTGCAGATCCAGGCCGTGCGTGGCCAAGGGTACATCCTGGTCGACACGGAGCAGGCCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/620126‑619998‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcctgGATCTGCAGGTGCTGGGCATTGATGTCGGCCAGTTTGCGGCGCAGGTTGCACACATGCACATCCAGGCCTCGGTCCAGTCGGGTATAGGCCCTGTGCAGCACGGTCTGGTACAGGAAGGGCTTGCTCAACGCTTCGTCGGGGTGG > NC_002947/620048‑620192 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |