New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1016619	54 (0.920)	3 (0.050)	3/248	NT	5.4%	coding (487/825 nt)	PP_0876	AraC family transcriptional regulator
	?	NC_002947	= 1016646	54 (0.970)					coding (460/825 nt)	PP_0876	AraC family transcriptional regulator

GACGTAGCGGTAGAAGCTTTGCCCCAGCACCTGGTTGAGCAGGTAGGAAATCTGGTTGCGGCTGTAGCCGCTGGCGTCGGCGACCTGTTGCAGGTCGAGCTCCGGGTCGAGGTAGGGGCGTTGACGCCGGAAGTAATGCTCCAGGTCCTGGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/1016467‑1016619 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cctgggcTTGTCGCCTCGGCAGTTGTCGACCATGGCCCAGGACCTGGAGCATTACTTCCGGCGTCAACGCCCCTACCTCGACCCGGAGCTCGACCTGCAACAGGTCGCCGACGCCAGCGGCTACAGCCGCAACCAGATTTCCTACCTGCTCAAC  <  NC_002947/1016646‑1016500                                                                                                                                                                                                                                                                                                              GACGTAGCGGTAGAAGCTTTGCCCCAGCACCTGGTTGAGCAGGTAGGAAATCTGGTTGCGGCTGTAGCCGCTGGCGTCGGCGACCTGTTGCAGGTCGAGCTCCGGGTCGAGGTAGGGGCGTTGACGCCGGAAGTAATGCTCCAGGTCCT                                                                                                                                                         >  2:181095/1‑149  ACGTAGCGGTAGAAGCTTTGCCCCAGCACCTGGTTGAGCAGGTAGGAAATCTGGTTGCGGCTGTAGCCGCTGGCGTCGGCGACCTGTTGCAGGTCGAGCTCCGGGTCGAGGTAGGGGCGTTGACGCCGGAAGTAATGCTCCAGGTCCTG                                                                                                                                                        <  8:4817/149‑1  ACGTAGCGGTAGAAGCTTTGCCCCAGCACCTGGTTGAGCAGGTAGGAAATCTGGTTGCGGCTGTAGCCGCTGGCGTCGGCGACCTGTTGCAGGTCGAGCTCCGGGTCGAGGTAGGGGCGTTGACGCCGGAAGTAATGCTCCAGGTCCT                                                                                                                                                         <  1:349908/148‑1                                     GAGCAGGTAGGAAATCTGGTTGCGGCTGTAGCCGCTGGCGTCGGCGACCTGTTGCAGGTCGAGCTCCGGGGCGAGGTAGGGGCGTTGACGCCGGAAGTAATGCTCCAGGTCCTGGGCTTGTCGCCTCGGCAGTTGTCGACCATGGCCC                                                                                                                      <  2:17869/148‑1                                       GCAGGTAGGAAATCTGGGTGCGGCTGTAGCCGCTGGCGTCGGCGACCTGTTGCAGGTCGAGCTCCGGGTCGAGGTAGGGGCGTTGACGCCGGAAGTAATGCTCCAGGTCCTGGGCTTGTCGCCTCGGCAGTTGTCGACCATGGCCCAGG                                                                                                                   <  2:308997/149‑1                                          GGTAGGAAATCTGGTTGCGGCTGTAGCCGCTGGCGTCGGCGACCTGTTGCAGGTCGAGCTCCGGGTCGAGGTAGGGGCGTTGACGCCGGAAGTAATGCTCCAGGTCCTGGGCTTGTCGCCTCGGCAGTTGTCGACCATGGCCCAGGACC                                                                                                                <  7:121127/149‑1                                                                                                                                                     TGGGCTTGTCGCCTCGGCAGTTGTCGACCATGGCCCAGGACCTGGAGCATTACTTCCGGCGTCAACGCCCCTACCTCGACCCGGAGCTCGACCTGCAACAGGTCGCCGACGCCAGCGGCTACAGCCGCAACCAGATTTCCTACCTGCT      >  2:2923/1‑148                                                                                                                                                        GCTTGTCGCCTCGGCAGTTGTCGACCATGGCCCAGGACCTGGAGCATTACTTCCGGCGTCAACGCCCCTACCTCGACCCGGAGCTCGACCTGCAACAGGTCGCCGACGCCAGCGGCTACAGCCGCAACCAGATTTCCTACCTGCTCAAC  <  7:49699/149‑1                                                                                                                                                                                                                                                                                                              GACGTAGCGGTAGAAGCTTTGCCCCAGCACCTGGTTGAGCAGGTAGGAAATCTGGTTGCGGCTGTAGCCGCTGGCGTCGGCGACCTGTTGCAGGTCGAGCTCCGGGTCGAGGTAGGGGCGTTGACGCCGGAAGTAATGCTCCAGGTCCTGGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/1016467‑1016619 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cctgggcTTGTCGCCTCGGCAGTTGTCGACCATGGCCCAGGACCTGGAGCATTACTTCCGGCGTCAACGCCCCTACCTCGACCCGGAGCTCGACCTGCAACAGGTCGCCGACGCCAGCGGCTACAGCCGCAACCAGATTTCCTACCTGCTCAAC  <  NC_002947/1016646‑1016500

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.