| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 1455925 = | 54 (0.920) | 5 (0.090) | 5/254 | NT | 8.9% | intergenic (+4/+245) | PP_1273/PP_1274 | multidrug MFS transporter outer membrane protein/short‑chain dehydrogenase/reductase family oxidoreductase |
| ? | NC_002947 | 1455962 = | 50 (0.880) | intergenic (+41/+208) | PP_1273/PP_1274 | multidrug MFS transporter outer membrane protein/short‑chain dehydrogenase/reductase family oxidoreductase | |||||
CCCGCTCCTACACCAGATTGGTGGTGGACACACATCGGTGGTTGGACACAGGCCGCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCAGTACAGGCTGTAAAGCATCATGCCATGGAC‑CGCAGTACCCCGCCCTCCAGATACTGCGCGTCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/1456074‑1455925‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtccATGGCATGATGCTTTACAGCCTGTACTGGCCTCTTCGCGGGTGAACCCGCTCCTACAGCGGCCTGTGTCCAACCACCGATGTGTGTCCACCACCAATCTGGTGTAGGAGCGGGTTTACCCGCGAATACGGTAGCGGCGGCAACGGT > NC_002947/1455962‑1456107 CCCGCTCCTACACCAGATTGGTGGTGGACACACATCGGTGGTTGGACACAGGCCGCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCAGTACAGGCTGTAAAGCATCATGCCATGGAC‑CGCAGTACCCCGCCCTCCAGATACTGCGCGTC > 3:119588/1‑149CCCGCTCCTACACCAGATTGGTGGTGGACACACATCGGTGGTTGGACACAGGCCGCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCAGTACAGGCTGTAAAGCATCATGCCATGGAC‑CGCAGTACCCCGCCCTCCAGATACTGCGCGTC > 8:311273/1‑149 CCGCTCCTACACCAGATTGGTGGTGGACACACATCGGTGGTTGGACACAGGCCGCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCAGTACAGGCTGTAAAGCATCATGCCATGGAC‑CGCAGTACCCCGCCCTCCAGATACTGCGCGTC > 3:176325/1‑148 CCGCTCCTACACCAGATTGGTGGTGGACACACATCGGTGGTTGGACACAGGCCGCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCAGTACAGGCTGTAAAGCATCATGCCATGGAC‑CGCAGTACCCCGCCCTCCAGATACTGCGCGTC < 4:176325/148‑1 ACATCGGTGGTTGGACACAGGCCGCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCAGTACAGGCTGTAAAGCATCATGCCATGGACGCGCAGTATCTGGAGGGCGGGGTACTGCG‑GTCCATGGCATGATGCTTTACAGCCTGTACTGGC < 7:306074/149‑1 GCCAGAACAGGCGGTAACTCATCAGGCCATGGCC‑CGCAGCACCCCGCCCTCCAGATACTGCGCGTCCATGGCATGATGCTTTACAGCCTGTACTGGCCTCTTCGCGGGTGAACCCGCTCCTACAGCGGCCTGTGTCCAACCACCGATGT < 8:306074/149‑1 GTAAAGCATCATGCCATGGAC‑CGCAGTACCCCGCCCTCCAGATACTGCG‑GTCCATGGCATGATGCTTTACAGCCTGTACTGGCCTCTTCGCGGGTGAACCCGCTCCTACAGCGGCCTGTGTCCAACCACCGATGTGTGTCCACCACCAA > 8:249689/1‑149 GCCATGGAC‑CGCAGTACCCCGCCCTCCAGATACTGCGCGTCCATGGCATGATGCTTTACAGCCTGTACTGGCCTCTTCGCGGGTGAACCCGCTCCTACAGCGGCCTGTGTCCAACCACCGATGTGTGTCCACCACCAATCTGGTGTAG < 5:77988/148‑1 GCCATGGAC‑CGCAGTACCCCGCCCTCCAGATACTGCGCGTCCATGGCATGATGCTTTACAGCCTGTACTGGCCTCTTCGCGGGTGAACCCGCTCCTACAGCGGCCTGTGTCCAACCACCGATGTGTGTCCACCACCAATCTGGTGTAG > 6:77988/1‑148 CCATGGCATGATGCTTTACAGCCTGTACTGGCCTCTTCGCGGGTGAACCCGCTCCTACAGCGGCCTGTGTCCAACCACCGATGTGTGTCCACCACCAATCTGGTGTAGGAGCGGGTTTACCCGCGAATACGGTAGCGGCGGCAACGGT > 5:338853/1‑148 CCCGCTCCTACACCAGATTGGTGGTGGACACACATCGGTGGTTGGACACAGGCCGCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCAGTACAGGCTGTAAAGCATCATGCCATGGAC‑CGCAGTACCCCGCCCTCCAGATACTGCGCGTCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/1456074‑1455925‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtccATGGCATGATGCTTTACAGCCTGTACTGGCCTCTTCGCGGGTGAACCCGCTCCTACAGCGGCCTGTGTCCAACCACCGATGTGTGTCCACCACCAATCTGGTGTAGGAGCGGGTTTACCCGCGAATACGGTAGCGGCGGCAACGGT > NC_002947/1455962‑1456107 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |