New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1519906	56 (0.950)	4 (0.070)	3/248	NT	6.8%	coding (246/1083 nt)	mraY	phospho‑N‑acetylmuramoyl‑pentapeptide‑ transferase
	?	NC_002947	= 1519929	56 (1.000)					coding (269/1083 nt)	mraY	phospho‑N‑acetylmuramoyl‑pentapeptide‑ transferase

ACCGCGTTGTCCCTGGCGCTGTGGCTGGGCCCCTGGATGATCCGTACCCTGCAAATTCGCCAGATCGGCCAGGCCGTGCGTAACGACGGCCCGCAATCGCACCTGTCCAAGTCCGGCACCCCGACCATGGGTGGGGCGCTGATCCTGTCGGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/1519754‑1519906 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtcggccCACAGCAAGGTGCTGACGGCGATGGCCGACAGGATCAGCGCCCCACCCATGGTCGGGGTGCCGGACTTGGACAGGTGCGATTGCGGGCCGTCGTTACGCACGGCCTGGCCGATCTGGCGAATTTGCAGGGTACGGATCATCCAGGGGC  <  NC_002947/1519929‑1519782                                                                                                                                                                                                                                                                                                               ACCGCGTTGTCCCTGGCGCTGTGGCTGGGCCCCTGGATGATCCGTACCCTGCAAATTCGCCAGATCGGCCAGGCCGTGCGTAACGACGGCCCGCAATCGCACCTGTCCAAGTCCGGCACCCCGACCATGGGTGGGGCGCTGATCCTGTC                                                                                                                                                          <  4:62610/149‑1     CGTTGTCCCTGGCGCTGTGGCTGGGCCCCTGGATGATCCGTACCCTGCAAATTCGCCTGATCGGCCAGGCCGTGCGTAACGACGGCCCGCACTCGCACCTGTCCAAGTCCGGCACCCCGACCATGGGTGGGGCGCTGATCCTGTCGGCC                                                                                                                                                      <  4:218745/149‑1                                    GATGATCCGTACCCTGCAAATTCGCCAGATCGGCCAGGCCGTGCGTAACGACGGCCCGCAATCGCACCTGTCCAAGTCCGGCACCCCGACCATGGGTGGGGCGCTGATCCTGTCGGCCCACAGCAAGGTGCTGACGGCGATGGCCGACA                                                                                                                       <  6:11132/149‑1                                    GATGATCCGTACCCTGCAAATTCGCCAGATCGGCCAGGCCGTGCGTAACGACGGCCCGCAATCGCACCTGTCCAAGTCCGGCACCCCGACCATGGGTGGGGCGCTGATCCTGTCGGCCCACAGCAAGGTGCTGACGGCGATGGCCGAC                                                                                                                        <  1:177839/148‑1                                    GATGATCCGTACCCTGCAAATTCCCCAGATCGGCCAGGCCGTGCGTAACGACTGCCCGCAATCGCACCTGTCCAAGTCCGGCACCCCGACCATGGGTGGGGCGCTGATCCTGTCGGCCCACAGCAAGGTGCTGACGGCGATGGCCGACA                                                                                                                       <  1:145508/149‑1                                     ATGATCCGTACCCTGCAAATTCGCCAGATCGGCCAGGCCGTGCGTAACGACGGCCCGCAATCGCACCTGTCCAAGTCCGGCACCCCGACCATGGGTGGGGCGCTGATCCTGTCGGCCCACAGCAAGGTGCTGACGGCGATGGCCGACAG                                                                                                                      <  4:57323/149‑1                                                                             TGCGTAACGACGGCCCGCAATCGCACCTGTCCAAGTCCGGCACCCCGACCATGGGTGGGGCGCTGATCCTGTCGG                                                                                                                                                        >  3:46082/1‑75                                                                             TGCGTAACGACGGCCCGCAATCGCACCTGTCCAAGTCCGGCACCCCGACCATGGGTGGGGCGCTGATCCTGTCGG                                                                                                                                                        <  4:46082/75‑1                                                                                                                                                   GTCGGCCCACAGCAAGGTGCTGACGGCGATGGCCGACAGGATCAGCGCCCCACCCATGGTCGGGGTGCCGGACTTGGACAGGTGCGATTGCGGGCCGTCGTTACGCACGGCCTGGCCGATCTGGCGAATTTGCAGGGTACGGATCATC         >  1:365037/1‑148                                                                                                                                                    TCGGCCCACAGCAAGGTGCTGACGGCGATGGCCGACAGGATCAGCGCCCCACCCATGGTCGGGGTGCCGGACTTGGACAGGTGCGATTGCGGGCCGTCGTTACGCACGGCCTGGCCGATCTGGCGAATTTGCAGGGTACGGATCATCCA       <  3:71249/149‑1                                                                                                                                                      GGCCCACAGCAAGGTGCTGACGGCGATGGCCGACAGGATCAGTGCCCCACCCATGGTCGGGGTGCCGGACTTGGACAGGTGCGATTGCGGGCCGTCGTTACGCACGGCCTGGCCGATCTGGCGAATTTGCAGGGTACGGATCATCCAGG     <  2:257078/149‑1                                                                                                                                                         CCACAGCAAGGTGCTGACGGCGATGGCCGACAGGATCAGCGCCCCACCCATGGTCGGGGTGCCGGACTTGGACAGGTGCGATTGCGGGCCGTCGTTACGCACGGCCTGGCCGATCTGCCGAATTTGCAGGGTACGGATCATCCAGGGGC  >  4:327577/1‑149                                                                                                                                                                                                                                                                                                               ACCGCGTTGTCCCTGGCGCTGTGGCTGGGCCCCTGGATGATCCGTACCCTGCAAATTCGCCAGATCGGCCAGGCCGTGCGTAACGACGGCCCGCAATCGCACCTGTCCAAGTCCGGCACCCCGACCATGGGTGGGGCGCTGATCCTGTCGGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/1519754‑1519906 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtcggccCACAGCAAGGTGCTGACGGCGATGGCCGACAGGATCAGCGCCCCACCCATGGTCGGGGTGCCGGACTTGGACAGGTGCGATTGCGGGCCGTCGTTACGCACGGCCTGGCCGATCTGGCGAATTTGCAGGGTACGGATCATCCAGGGGC  <  NC_002947/1519929‑1519782

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.