New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1730772 =	62 (1.050)	4 (0.070)	4/258	NT	6.4%	coding (316/1152 nt)	dapE	succinyl‑diaminopimelate desuccinylase
	?	NC_002947	1730807 =	55 (0.950)					coding (281/1152 nt)	dapE	succinyl‑diaminopimelate desuccinylase

CTGTGTTTTGCCGGCCACACCGACGTGGTGCCTACCGGCCCGGTCCAGCAATGGCAGCATGAACCCTTCGAGGCACTGATCGACGCCGACGGCATGCTCTGC‑GGCCGT‑GGCGCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/1730886‑1730772 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgATCAGTGCCTCGAAGGGTTCATGCTGCCATTGCTGGACCGGGCCGGTAGGCACCACGTCGGTGTGGCCGGCAAAACACAGTACCGGGCCGTCCTGGCTGCCGTGGGTGGCCCAGAAGTTGTCGACGTCTTCAATGCGCATCGGCTC  >  NC_002947/1730807‑1730952                                                                                                                                                                                                                                                                         CTGTGTTTTGCCGGCCACACCGACGTGGTGCCTACCGGCCCGGTCCAGCAATGGCAGCATGAACCCTTCGAGGCACTGATCGGCGCC‑ACGGC‑CGCAGAGCATGCCGTCGGCGTCGATCAGTGCCTCGAAGGGTTCATGCTGCCATTGCT                                                                                                                  <  7:117660/149‑1                                                                            CTGATCGACGCCGACGGCATGCGCTGC‑GGCCGT‑GGCGCCGATCAGTGCCTCGAAGGGTTCATGCTGCCATTGCTGGACCGGGCCGGTAGGCACCACGTCGGTGTGGCCGGCAAAACACAGTACCGGGCCGTCCTGGCTGCCGTGGGTGG                                       <  8:117660/149‑1                                                                             TGATCGACGCCGACGGCATGCTCTGC‑GGCCGT‑GGCGCCGATCAGTGCCTCGAAGGGTTCATGCTGCCATTGCTGGACCGGGCCGGTAGGCACCACGTCGGTGTGGCCGGCAAAACACAGTACCGGGCCGTCCTGGCTGCCGTGGGT                                         <  7:199551/146‑1                                                                             TGATCGACGCCGACGGCATGCTCTGC‑GGCCGT‑GGCGCCGATCAGTGCCTCGAAGGGTTCATGCTGCCATTGCTGGACCGGGCCGGTAGGCACCACGTCGGTGTGGCCGGCAAAACACAGTACCGGGCCGTCCTGGCTGCCGTGGGT                                         >  8:199551/1‑146                                                                                                                    CGATCAGTGCCTCGAAGGGTTCATGCTGCCATTGCTGGACCGGGCCGGTAGGCACCACGTCGGTGTGGCCGGCAAAACACAGTACCGGGCCGTCCTGGCTGCCGTGGGTGGCCCAGAAGTTGTCGACGTCTTCAATGCGCATCGGCTC  >  5:165773/1‑148                                                                                                                                                                                                                                                                         CTGTGTTTTGCCGGCCACACCGACGTGGTGCCTACCGGCCCGGTCCAGCAATGGCAGCATGAACCCTTCGAGGCACTGATCGACGCCGACGGCATGCTCTGC‑GGCCGT‑GGCGCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/1730886‑1730772 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgATCAGTGCCTCGAAGGGTTCATGCTGCCATTGCTGGACCGGGCCGGTAGGCACCACGTCGGTGTGGCCGGCAAAACACAGTACCGGGCCGTCCTGGCTGCCGTGGGTGGCCCAGAAGTTGTCGACGTCTTCAATGCGCATCGGCTC  >  NC_002947/1730807‑1730952

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.