New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1755406	63 (1.070)	6 (0.110)	5/250	NT	10.2%	intergenic (+121/‑79)	PP_1558/PP_1559	hypothetical protein/holin
	?	NC_002947	= 1755446	46 (0.820)					intergenic (+161/‑39)	PP_1558/PP_1559	hypothetical protein/holin

GGCGCGATTGATATTCGTCGTGAAGCCGCTTGACAGCCCCGGTCCTCACCCGTATCTTTCGTGTTACTTTGCGGTAGGTGCGCGAGAGCAAACTCGCCATCACCAGCAGCCTCCTTAGAGCCTCGGCATTCGCCGGGGCTTTTTCGTTTTCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/1755253‑1755406 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttcggcCCCAACAGCACTCCCAGCTCGGGGCGATGGGTGTGGTGGAGCCGAAAACGAAAAAGCCCCGGCGAATGCCGAGGCTCTAAGGAGGCTGCTGGTGATGGCGAGTTTGCTCTCGCGCACCTACCGCAAAGTAACACGAAAGATACGG  <  NC_002947/1755446‑1755302                                                                                                                                                                                                                                                                                                             GGCGCGATTGATATTCGTCGTGAAGCCGCTTGACAGCCCCGGTCCTCACCCGTATCTTTCGTGTTACTTTGCGGTAGGTGCGCGAGAGCAAACTCGCCATCACCAGCAGCCTCCTTAGAGCCTCGGCATTCGCCGGGGCTTTTTCGTTT                                                                                                                                                        >  6:209779/1‑149   CGCGATTGATATGCGTCGTCAAGCCGCTTGACAGCCCCGGTCCTCACCCGTATCTTTCGTGTTACTTTGCGGTAGGTGCGCGAGAGCAAACTCGCCATCACCAGCAGCCTCCTTAGAGCCTCGGCATTCGCCGGGGCTTTTTCGTTTTC                                                                                                                                                      <  8:130701/149‑1       ATTGATATTCGTCGTGAAGCCGCTTGACAGCCCCGGTCCTCACCCGTATCTTTCGTGTTACTTTGCGGTAGGTGCGCGAGAGCAAACTCGCCATCACCAGCAGCCTCCTTAGAGCCTCGGCATTCGCCGGGGCTTTTTCGTTTTCGGC                                                                                                                                                   >  8:200306/1‑148            TATTCGTCGTGAAGCCGCTTGACAGCCCCGGTCCTCACCCGTATCTTTCGTGTTACTTTGCGGTAGGTGCGCGAGAGCAAACTCGCCATCACCAGCAGCCTCCTTAGAGCCTCGGCATTCGCCGGGGCTTTTTCGTTTTCGGCCCCAA                                                                                                                                              >  7:120984/1‑148                             CTTGACAGCCCCGGTCCTCACCCGTATCTTTCGTGTTACTTTGCGGTAGGTGCGCGAGAGCAAACTCGCCATCACCAGCAGCCTCCTTAGAGCCTCGGTATTCGCCGGGGCTTTTTCGTTTTCGGCCCCAACAGCACTCCCAGCTCGGG                                                                                                                            >  2:79457/1‑149                                                  CCGTATCTTTCGTGTTACTTTGCGGTAGGTGCGCGAGAGCAAACTCGCCATCACCAGCAGCCTCCTTAGAGCCTCGGCATTCGCCGGGGCTTTTTCGTTTTCGGCCCCAACAGCACTCCCAGCTCGGGGCGATGGGTGTGGTGGAGCC                                                                                                        >  8:47746/1‑148                                                       TCTTTCGTGTTACTTTGCGGTAGGTGCGCGAGAGCAAACTCGCCATCACCAGCAGCCTCCTTAGAGCCTCGGCATTCGCCGGGGCTTTTTCGTTTTCGGCCCCAACAGCACTCCCAGCTCGGGGCGATGGGTGTGGTGGAGCCGAAAA                                                                                                   <  7:47746/148‑1                                                           TCGTGTTACTTTGCGGTAGGTGCGCGAGAGCAAACTCGCCATCACCAGCAGCCTCCTTAGAGCCTCGGTATTCGCCGGGGCTTTTTCGTTTTCGGCCCCAACAGCACTCCCAGCTCGGGGCGATGGGTGTGGTGGAGCCGAAAAC                                                                                                  <  1:79457/145‑1                                                           TCGTGTTACTTTGCGGTAGGTGCGCGAGAGCAAACTCGCCATCACCAGCAGCCTCCTTAGAGCCTCGGCATTCGCCGGGGCTTTTTCGTTTTCGGCCCCAACAGCACTCCCAGCTCGGGGCGATGGGTGTGGTGGAGCCGAAAAC                                                                                                  <  5:8977/145‑1                                                              TGTTACTTTGCGGTAGGTGCGCGAGAGCAAACTCGCCATCACCAGCAGCCTCCTTAGAGCCTCGGCATTCGCCGGGGCTTTTTCGTTTTCGGCCCCAACAGCACTCCCAGCTCGGGGCGATGGGTGTGGTGGAGCCGAAAACGAAAAAG                                                                                           <  8:120984/149‑1                                                                                                                                                        GGCCCCAACAGCACTCCGAGCTCGGGGCGATGGGTGTGGTGGAGCCGAAAACGAAAAAGCCCCGGCGAATGCCGAGGCTCTAAGGAGGCTGCTGGTGATGGCGAGTTTGCTCTCGCGCACCTACCGCAAAGTAACACGAAAGATACGG  <  4:177159/148‑1                                                                                                                                                         GCCCCAACAGCACTCCCAGCTCGGGGCGATGGGTGTGGTGGAGCCGAAAACGAAAAAGCCCCGGCGAATGCCGAGGCTCTAAGG                                                                 >  3:170488/1‑84                                                                                                                                                         GCCCCAACAGCACTCCCAGCTCGGGGCGATGGGTGTGGTGGAGCCGAAAACGAAAAAGCCCCGGCGAATGCCGAGGCTCTAAGG                                                                 <  4:170488/84‑1                                                                                                                                                                                                                                                                                                             GGCGCGATTGATATTCGTCGTGAAGCCGCTTGACAGCCCCGGTCCTCACCCGTATCTTTCGTGTTACTTTGCGGTAGGTGCGCGAGAGCAAACTCGCCATCACCAGCAGCCTCCTTAGAGCCTCGGCATTCGCCGGGGCTTTTTCGTTTTCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/1755253‑1755406 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttcggcCCCAACAGCACTCCCAGCTCGGGGCGATGGGTGTGGTGGAGCCGAAAACGAAAAAGCCCCGGCGAATGCCGAGGCTCTAAGGAGGCTGCTGGTGATGGCGAGTTTGCTCTCGCGCACCTACCGCAAAGTAACACGAAAGATACGG  <  NC_002947/1755446‑1755302

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.