New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | = 1755406 | 63 (1.070) | 6 (0.110) | 5/250 | NT | 10.2% | intergenic (+121/‑79) | PP_1558/PP_1559 | hypothetical protein/holin |
? | NC_002947 | = 1755446 | 46 (0.820) | intergenic (+161/‑39) | PP_1558/PP_1559 | hypothetical protein/holin |
CCGTATCTTTCGTGTTACTTTGCGGTAGGTGCGCGAGAGCAAACTCGCCATCACCAGC‑AGCCTCCTTAGAGCCTCGGCATTCGCCGGGGCTTTTTCGTTTTCGGCTCCACCACACCCATCGCCCCGAGCTGGGAGTGCTGTTGGGGCCGAACCTACTCCGCTCCCCAAAAGGGAGGAATCGAGATGCCAAACATGCCCGAGAAGGATCCTGGCCTGTGGGCCGCTGTGCTCACCTGGGTGCTGGCCCATCAGCCTCAGCTGTATGCCGCTGGCCTGTCAGTCGCCATCG > NC_002947/1755302‑1755590 | ccGTATCTTTCGTGTTACTTTGCGGTAGGTGCGCGAGAGCAAACTCGCCATCACCAGC‑AGCCTCCTTAGAGCCTCGGCATTCGCCGGGGCTTTTTCGTTTTCGGCTCCACCACACCCATCGCCCCGAGCTCGGAGTGCTGTTGGGgcc < 4:177159‑M2/148‑4 (MQ=255) aTCTTTCGTGTTACTTTGCGGTAGGTGCGCGAGAGCAAACTCGCCATCACCAGC‑AGCCTCCTTAGAGCCTCGGCATTCGCCGGGGCTTTTTCGTTTTCGGCTCCACCACACCCATCGCCCCGAGCTGGGAGTGCTGTTGGGGCCGAAcc > 2:305227/1‑149 (MQ=255) tttCGTGTTACTTTGCGTTATGTGCCCGAGAGCAAACTCGCCATCACAAGC‑AGCATCGTTAGAGCCTCGTCATTCGCGGTTGCTTTTTCGTTTTCGGCTCCACCACACCGATCGCCCGGAGCTGGGAGTGGTGTTGGGGCCGAACCTa < 2:80553/148‑1 (MQ=255) tCGTGTTACTTTGCGGTAGGTGCGCGAGAGCAAACTCGCCATCACCAGC‑AGCCTCCTTAGAGCCTCGGCATTCGCCGGGGCTTTTTCGTTTTCGGCTCCACCACACCCATCGCCCCGAGCTGGGAGTGCTGTTGGGGCCGAACCTa < 4:305950/146‑1 (MQ=255) gtgtTACTTTGCGGTAGGTGCGCGAGAGCAAACTCGCCATCACCAGC‑AGCCTCCTTAGAGCCTCGGCATTCGCCGGGGCTTTTTCGTTTTCGGCTCCACCACACCCATCGCCCCGAGCTGGGAGTGCTGTTGGGGCCGAACCTACTCCg < 4:71421/149‑1 (MQ=255) tgtTACTTTGCGGTAGGTGCGCGAGAGCAAACTCGCCATCACCAGC‑AGCCTCCTTAGAGCCTCGGCATTCGCCGGGGCTTTTTCGTTTTCGGCTCCACCACACCCATCGCCCCGAGCTGGGAGTGCTGTTGGGGCCGAACCTACTCCGc > 3:214110/1‑149 (MQ=255) aCTTTGCGGTAGGTGCGCGAGAGCAAACTCGCCATCACCAGC‑AGCCTCCTTAGAGCCTCGGCATTCGCCGGGGCTTTTTCGTTTTCGGCTCCACCACACCCATCGCCCCGAGCTGGGAGTGCTGTTGGGGCCGAACCTACTCCGCTcc < 5:72348/148‑1 (MQ=255) gCGGTAGGTGCGCGAGAGCAAACTCGCCATCACCAGC‑AGCCTCCTTAGAGCCTCGGCATTCGCCGGGGCTTTTTCGTTTTCGGCTCCACCACACCCATCGCCCCGAGCTGGGAGTGCTGTTGGGGCCGAACCTACTCCGCTCCCCaa > 2:274168/1‑147 (MQ=255) cGGTAGGTGCGCGAGAGCAAACTCGCCATCACCAGC‑AGCCTCCTTAGAGCCTCGGCATTCGCCGGGGCTTTTTCGTTTTCGGCTCCACCACACCCATCGCCCCGAGCTGGGAGTGCTGTTGGGGCCGAACCTACTCCGCTCCCCaaaa < 5:373169/148‑1 (MQ=255) cGGTAGGTGCGCGAGAGCAAACTCGCCATCACCAGC‑AGCCTCCTTAGAGCCTCGGCATTCGCCGGGGCTTTTTCGTTTTAGGCTCCACCACACCCATCGCCCCGAGCTGGGAGTGCTGTTGGGGCCGAACCTACTCCGCTCCCCaaaa < 8:350635/148‑1 (MQ=255) ggTAGGTGCGCGAGAGCAAACTCGCCATCACCAGC‑AGCCTCCTTAGAGCCTCGGCATTCGCCGGGGCTTTTTCGTTTTCGGCTCCACCACACCCATCGCCCCGAGCTGGGAGTGCTGTTGGGGCCGAACCTACTCCGCTCCCCAAAAgg < 8:280756/149‑1 (MQ=255) gTAGGTGCGCGAGAGCAAACTCGCCATCACCAGC‑AGCCTCCTTAGAGCCTCGGCATTCGCCGGGGCTTTTTCGTTTTCGGCTCCACCACACCCATCGCCCCGAGCTGGGAGTGCTGTTGGGGCCGAACCTACTCCGCTCCCCAAAAgg > 5:138371/1‑148 (MQ=255) tAGGTGCGCGAGAGCAAACTCGCCATCACCAGC‑AGCCTCCTTAGAGCCTCGGCATTCGCCGGGGCTTTTTCGTTTTCGGCTCCACCACACCCATCGCCCCGAGCTGGGAGTGCTGTTGGGGCCGAACCTACTCCGCTCCCCAAAAGtga < 4:276094/149‑1 (MQ=255) tAGGTGCGCGAGAGCAAACTCGCCATCACCAGC‑AGCCTCCTTAGAGCCTCGGCATTCGCCGGGGCTTTTTCGTTTTCGGCTCCACCACACCCATCGCCCCGAGCTGGGAGTGCTGTTGGGGCCGAACCTACTCCGCTCCCCAAAAGgga < 1:274168/149‑1 (MQ=255) ggTGCGCGAGAGCAAACTCGCCATCACCAGC‑AGCCTCCTTAGAGCCTCGGCATTCGCCGGGGCTTTTTCGTTTTCGGCTCCACCACACCCATCGCCCCGAGCTGGGAGTGCTGTTGGGGCCGAACCTACTCCGCTCCCCAAAAGggag < 7:125619/148‑1 (MQ=255) ggTGCGCGAGAGCAAACTCGCCATCACCAGC‑AGCCTCCTTAGAGCCTCGGCATTCGCCGGGGCTTTTTCGTTTTCGGCTCCACCACACCCATCGCCCCGAGCTGGGAGTGCTGTTGGGGCCGAACCTACTCCGCTCCCCAAAAGggag < 6:140884/148‑1 (MQ=255) ggTGCGCGAGAGCAAACTCGCCATCACCAGC‑AGCCTCCTTAGAGCCTCGGCATTCGCCGGGGCTTTTTCGTTTTCGGCTCCACCACACCCATCGCCCCGAGCTGGGAGTGCTGTTGGGGCCGAACCTACTCCGCTCCCCAAAAGggag < 4:214110/148‑1 (MQ=255) gcgAGAGCAAACTCGCCATCACCAGCGAGCCTCCTTAGAGCCTCGGCATTCGCCGGGGCTTTTTCGTTTTCGGCTCCACCACACCCATCGCCCCGAGCTGGGAGTGCTGTTGGGGCCGAACCTACTCCGCTCCCCAAAAGGGAGGAATc > 1:4089/1‑149 (MQ=255) gcgAGAGCAAACTCGCCATCACCAGC‑AGCCTCCTTAGAGCCTCGGCATTCGCCGGGGCTTTTTCGTTTTCGGCTCCACCACACCCATCGCCCCGAGCTGGGAGTGCTGTTGGGGCCGAACCTACTCCGCTCCCCAAAAGGGAGGAATCg < 6:86510/149‑1 (MQ=255) agagCAAACTCGCCATCACCAGC‑AGCCTCCTTAGAGCCTCGGCATTCGCCGGGGCTTTTTCGTTTTCGGCTCCACCACACCCATCGCCCCGAGCTGGGAGTGCTGTTGGGGCCGAACCTACTCCGCTCCCCAAAAGGGAGGAATCgaga < 6:350863/149‑1 (MQ=255) gagCAAACTCGCCATCACCAGC‑AGCCTCCTTAGAGCCTCGGCATTCGCCGGGGCTTTTTCGTTTTCGGCTCCACCACACCCATCGCCCCGAGCTGGGAGTGCTGTTGGGGCCGTACCTACTCCGCTCCCCAAAAGGGAGGAATCGAGAt < 3:262620/149‑1 (MQ=255) aCTCGCCATCACCAGC‑AGCCTCCTTAGAGCCTCGGCATTCGCCGGGGCTTTTTCGTTTTCGGCTCCACCACACCCATCGCCCCGAGCTGGGAGTGCTGTTGGGGCCGAACCTACTCCGCTCCCCAAAAGGGAGGAATCGAGATGCCaaa > 4:130986/1‑149 (MQ=255) tCGCCATCACCAGC‑AGCCTCCTTAGAGCCTCGGCATTCGCCCGGCCTTTTTCGTTTTCGGCTCCACCACACACATCGCCCCGAGCTGGGAGTGCTGTTGGGGCCGAACCTACTCCGCTCCCCAAAAGGGAGGAATCGAGATGCCAAACa > 1:144485/1‑149 (MQ=255) cATCACCAGC‑AGCCTCCTTAGAGCCTCGGCATTCGCCGGGGCTTTTTCGTTTTCGGCTCCACCACACCCATCGCCCCGAGCTGGGAGTGCTGTTGGGGCCGAACCTACTCCGCTCCCCAAAAGGGAGGAATCGAGATGCCAAACATGcc > 6:302072/1‑149 (MQ=255) aTCACCCGC‑AGCCTCCTTAGAGCCTCGGCATTCGCCGGGGCTTTTTCGTTTTAGGCTCCAACACACCCATCGCCCCCAGCTGGCAGTGCAGTTGGGGCCGAACCTACTACGCTCCCCAAAAGGCAAGAATCGAGATGCCAAACATGccc > 2:285669/1‑149 (MQ=255) cACCAGC‑AGCCTCCTTAGAGCCTCGGCATTCGCCGGGGCTTTTTCGTTTTCGGCTCCACCACACCCATCGCCCCGAGCTGGGAGTGCTGTTGGGGCCGAACCTACTCCGCTCCCCAAAAGGGAGGAATCGAGATGCCAAACATGccc > 1:279652/1‑147 (MQ=255) cctcctTAGAGCCTCGGCATTCGCCGGGGCTTTTTCGTTTTCGGCTCCACCACACCCATCGCCCCGAGCTGGGAGTGCTGTTGGGGCCGAACCTACTCCGCTCCCCAAAAGGGAGGAATCGAGATGCCAAACATGCTCGAGAAGGATcc > 4:42980/1‑149 (MQ=255) cctTAGAGCCTCGGCATTCGCCGGGGCTTTTTCGTTTTCGGCTCCACCACACCCATCGCCCCGAGCTGGGAGTGCTGTTGGGgc < 4:170488‑M2/84‑3 (MQ=255) cctTAGAGCCTCGGCATTCGCCGGGGCTTTTTCGTTTTCGGCTCCACCACACCCATCGCCCCGAGCTGGGAGTGCTGTTGGGgc > 3:170488‑M2/1‑82 (MQ=255) gaaaaagCCTCGGCATTCGCCGGGGCTTTTTCGTTTTCGGCTCCACCACACCCATCGCCCCGAGCTGGGAGTGCTGTTGGGGCCGAACCTACTCCGCTCCCCAAAAGGGAGGAATCGAGATGCCAAACATGCCCGAGAAGGATCCTGGc > 4:253614/6‑149 (MQ=255) ttAGAGCCTCGGCATTCGCCGGGGCTTTTTCGTTTTCGGCTCCACCACACCCATCGCCCCGAGCTGGGAGTGCTGTTGGGGCCGAACCTACTCCGCTCCCCAAAAGGGAGGAATCGAGATGCCAAACATGCCCGAGAAGGATCCTGGcc > 5:227363/1‑149 (MQ=255) gagCCTCGGCATTCGCCGGGGCTTTTTCGTTTTCGGCTCCACCACACCCATCGCCCCGAGCTGGGAGTGCTGTTGGGGCCGAACCTACTCCGCTCCCCAAAAGGGAGGAATCGAGATGCCAAACATGCCCGAGAAGGATCCTGGCCtgt < 3:177159/149‑1 (MQ=255) agCCTCGGCATTCGCCGGGGCTTTTTCGTTTTCGGCTCCACCACACCCATCGCCCCGAGCTGGGAGTGCTGTTGGGGCCGAACCTACTCCGCTCCCCAAAAGGGAGGAATCGAGATGCCAAACATGCCCGAGAAGGATCCTGGCCtgtg < 5:366004/149‑1 (MQ=255) agCCTCGGCATTCGCCGGGGCTTTTTCGTTTTCGGCTCCACCACACCCATCGCCCCGAGCTGGGAGTGCTGTTGGGGCCGAACCTACTCCGCTCCCCAAAAGGGAGGAATCGAGATGCCAAACATGCCCGAGAAGGATCCTGGCCtgtg < 2:279652/149‑1 (MQ=255) gCCTCGGCATTCGCCGGGGCTTTTTCGTTTTCGGCTCCACCACACCCATCGCCCCGAGCTGGGAGTGCTGTTGGGGCCGAACCTACTCCGCTCCCCAAAAGGGAGGAATCGAGATGCCAAACATGCCCGAGAAGGATCCTGGCCTGTgg > 8:69269/1‑149 (MQ=255) ggCATTCGCCGGGGCTTTTTCGTTTTCGGCTCCACCACACCCATCGCCCCGAGCTGGGAGTGCTGTTGGGGCCGAACCTACTCCGCTCCCCAAAAGGGAGGAATCGAGATGCCAAACATGCCCGAGAAGGATCCTGGCCtgtg < 4:290766/143‑1 (MQ=255) ggCATTCGCCGGGGCTTTTTCGTTTTCGGCTCCACCACACCCATCGCCCCGAGCTGGGAGTGCTGTTGGGGCCGAACCTACTCCGCTCCCCAAAAGGGAGGAATCGAGATGCCAAACATGCCCGAGAAGGATCCTGGCCtgtg > 3:290766/1‑143 (MQ=255) ggggCTTTTTCGTTTTCGGCTCCACCACACCCATCGCCCCGAGCTGGGAGTGCTGTTGGGGCCGAACCTACTCCGCTCCCCAAAAGGGAGGAATCGAGATGCCAAACATGCCCGAGAAGGATCCTGGCCTGTGGGCCGCTGTGCTCAcc > 1:77385/1‑149 (MQ=255) gCTTTTTCGTTTTCGGCTCCACCACACCCATCGCCCCGAGCTGGGAGTGCTGTTGGGGCCGAACCTACTCCGCTCCCCAAAAGGGAGGAATCGAGATGCCAAACATGCCCGAGAAGGATCCTGGCCTGTGGGCCGCTGTGCTCACCTgg < 5:302072/149‑1 (MQ=255) gCTTGTTCGTTTTCGGCTCCACCACACCCATCGCCCCGCGCTGGGAGGGCTGTGGGGGCCGAACCTCCTCCGCTCCCCAACCGGGAGGAAGCGAGATGCCACACCTGCCCGAGAAGGATCCTGGCCTGTGGGCCGCTGTGCTCACCTgg < 3:25364/149‑1 (MQ=25) cTTTTTCGTTTTCGGCTCCACCACACCCATCGCCCCGAGCTGGGAGTGCTGTTGGGgccgaaaacgaaaaagccccggcgaatgccgaggctctaaggaggctgctggtgatggcgagtttgctctcgcgcacctaccgcaaagtaaca < 8:120984‑M2/149‑94 (MQ=255) ttcgttttcgGCTCCACCACACCCATCGCCCCGAGCTGGGAGTGCTGTTGGGGCCGAACCTACTCCGCTCCCCAAAAGGGAGGAATCGAGATGCCAAACATGCCCGAGAAGGATCCTGGCCTGTGGGCCGCTGTGCTCACCTGGGTGCt > 5:16011/1‑149 (MQ=255) gttttcgGCTCCACCACACCCATCGCCCCGAGCTGGGAGTGCTGTTGGGgccgaaaacgaaaaagccccggcgaatgccgaggctctaaggaggctgctggtgatggcgagtttgctctcgcgcacctaccgcaaagtaacacga < 5:8977‑M2/145‑97 (MQ=255) gttttcgGCTCCACCACACCCATCGCCCCGAGCTGGGAGTGCTGTTGGGgccgaaaacgaaaaagccccggcgaataccgaggctctaaggaggctgctggtgatggcgagtttgctctcgcgcacctaccgcaaagtaacacga < 1:79457‑M2/145‑97 (MQ=255) gttttcgGCTCCACCACACCCATCGCCCCGAGCTGGGAGTGCTGTTGGGGCCGAACCTACTCCGCTCCCCAAAAGGGAGGAATCGAGATGCCAAACATGCCCGAGAAGGATCCTGGCCTGTGGGCCGCTGTGCTCACCTGGGTGCTgg < 2:4089/148‑1 (MQ=255) gttttcgGCTCCACCACACCCATCGCCCCGAGCTGGGAGTGCTGTTGGGGCCGAACCTACTCCGCTCCCCAAAAGGGAGGAATCGAGATGCCAAACATGCCCGAGAAGGATCCTGCCCTGAGGGCCGCTGTGCTCACCTGGGTGCTGGc > 8:65286/1‑149 (MQ=255) ttttcgGCTCCACCACACCCATCGCCCCGAGCTGGGAGTGCTGTTGGGgccgaaaacgaaaaagccccggcgaatgccgaggctctaaggaggctgctggtgatggcgagtttgctctcgcgcacctaccgcaaagtaacacgaaaga < 7:47746‑M2/148‑101 (MQ=255) ggCTCCACCACACCCATCGCCCCGAGCTGGGAGTGCTGTTGGGgccgaaaacgaaaaagccccggcgaatgccgaggctctaaggaggctgctggtgatggcgagtttgctctcgcgcacctaccgcaaagtaacacgaaagatacgg > 8:47746‑M2/1‑43 (MQ=255) ggCTCCACCACACCCATCGCCCCGAGCTGGGAGTGCTGTTGGGGCCGAACCTACTCCGCTCCCCAAAAGGGAGGAATCGAGATGCCAAACATGCCCGAGAAGGATCCTGGCCTGTGGGCCGCTGTGCTCACCTGGGTGCTGGCCCATCa < 2:77385/149‑1 (MQ=255) tCCACCACACCCATCGCCCCGAGCTGGGAGTGCTGTTGGGGCCGAACCTACTCCGCTCCCCAAAAGGGAGGAATCGAGATGCCAAACATGCCCGAGAAGGATCCTGGCCTGTGGGCCGCTGTGCTCACCTGGGTGCTGGCCCATCAGcc > 3:316266/1‑149 (MQ=255) caccacACCCATCGCCCCGAGCTGGGAGTGCTGTTGGGGCCGAACCTACTCCGCTCCCCAAAAGGGAGGAATCGAGATGCCAAACATGCCCGAGAAGGATCCTGGCCTGTGGGCCGCTGTGCTCACCTGGGTGCTGGCCCATCAGCCt > 1:26860/1‑148 (MQ=255) cacaCCCATCGCCCCGAGCTGGGAGTGCTGTTGGGGCCGAACCTACTCCGCTCCCCAAAAGGGAGGAATCGAGATGCCAAACATGCCCGAGAAGGATCCTGGCCTGTGGGCCGCTGTGCTCACCTGGGTGCTGGCCCATCAGCCTCAGc < 6:227363/149‑1 (MQ=255) cacaCCCATCGCCCCGAGCTGGGAGTGCTGTTGGGGCCGAACCTACTCCGCTCCCCAAAAGGGAGGAATCGAGATGCCAAACATGCCCGAGAAGGATCCTGGCCTGTGGGCCGCTGTGCTCACCTGGGTGCTGGCCCATCAGCCTCAGc > 4:316903/1‑149 (MQ=255) aTCGCCCCGAGCTGGGAGTGCTGTTGGGGCCGAACCTACTCCGCTCCCCAAAAGGGAGGAATCGAGATGCCAAACATGCCCGAGAAGGATCCTGGCCTGTGGGCCGCTGTGCTCACCTGGGTGCTGGCCCATCAGCCTCAGCTGTATGc < 3:130986/149‑1 (MQ=255) cccGAGCTGGGAGTGCTGTTGGGgccgaaaacgaaaaagccccggcgaataccgaggctctaaggaggctgctggtgatggcgagtttgctctcgcgcacctaccgcaaagtaacacgaaagatacgggtgaggaccggggctgtcaag > 2:79457‑M2/1‑23 (MQ=255) gAGCTGGGAGTGCTGTTGGGGCCGAACCTACTCCGCTCCCCAAAAGGGAGGAATCGAGATGCCAAACATGCTCGAGAAGGATCCTGGCCTGTGGGCCGCTGTGCTCACCTGGGTGCTGGCCCATCAGCCTCAGCTGTATGCCGCTGGcc < 3:42980/149‑1 (MQ=255) aGCGGGGAGTGCTGTTGGGGCCGAACCTACTCCGCTCCCCAAAAGGGAGGAATCGAGATGCCAAACATGCCCGAGAAGGATCCTGGCCTGTGGGCCGCTGTGCTCACCTGGGTGCTGGCCCATCAGCCTCAGCTGTATGCCGCTGGCCt < 3:253614/149‑1 (MQ=255) gggAGTGCTGTTGGGGCCGAACCTACTCCGCTCCCCAAAAGGGAGGAATCGAGATGCCAAACATGCCCGAGAAGGATCCTGGCCTGTGGGCCGCTGTGCTCACCTGGGTGCTGGCCCATCAGCCTCAGCTGTATGCCGCTGGCCTGt > 6:326977/1‑147 (MQ=255) ttGGGgccgaaaacgaaaaagccccggcgaatgccgaggctctaaggaggctgctggtgatggcgagtttgctctcgcgcacctaccgcaaagtaacacgaaagatacgggtgaggaccggggctgtcaagcggcttcacgacgaata > 7:120984‑M2/1‑5 (MQ=255) ttGGGGCCGAACCTACTCCGCTCCCCAAAAGGGAGGAATCGAGATGCCAAACATGCCCGAGAAGGATCCTGGCCTGTGGGCCGCTGTGCTCACCTGGGTGCTGGCCCATCAGCCTCAGCTGTATGCCGCTGGCCTGTCAGTCGCCATCg > 8:303264/1‑149 (MQ=255) | CCGTATCTTTCGTGTTACTTTGCGGTAGGTGCGCGAGAGCAAACTCGCCATCACCAGC‑AGCCTCCTTAGAGCCTCGGCATTCGCCGGGGCTTTTTCGTTTTCGGCTCCACCACACCCATCGCCCCGAGCTGGGAGTGCTGTTGGGGCCGAACCTACTCCGCTCCCCAAAAGGGAGGAATCGAGATGCCAAACATGCCCGAGAAGGATCCTGGCCTGTGGGCCGCTGTGCTCACCTGGGTGCTGGCCCATCAGCCTCAGCTGTATGCCGCTGGCCTGTCAGTCGCCATCG > NC_002947/1755302‑1755590 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |