New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1799056 =	51 (0.870)	4 (0.070)	4/248	NT	6.9%	coding (979/1128 nt)	lpxB	lipid‑A‑disaccharide synthase
	?	NC_002947	1799094 =	59 (1.060)					coding (1017/1128 nt)	lpxB	lipid‑A‑disaccharide synthase

ATGTCAGCGGTCCTTGAGCAGGGCCAGTACCGCCTCGGCCGCCTGATTGGAGGCGTCACGGCGCAGGGTGCGGTGAATTTCGTCGAAACGTTCGGTCTGCTGGCTTCCATCGCGCACCAGCGGCGCCAGGGTGTTGGCCAGCGCTTCGCTGGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/1799208‑1799056 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgctggtGCGCGATGGAAGCCAGCAGACCGAACGTTTCGACGAAATTCACCGCACCCTGCGCCGTGACGCCTCCAATCAGGCGGCCGAGGCGGTACTGGCCCTGCTCAAGGACC  >  NC_002947/1799094‑1799200                                                                                                                                                                                                                                                                      ATGTCAGCGGTCCTTGAGCAGGGCCAGTACCGCCTCGGCCGCCTGATTGGAGGCGTCACGGCGCAGGGTGCGGTGAATTTCGTCGAAACGTTCGGTCTGCTGGCTTCCATCGCGCACCAGCGGCGCCAGGGTGTTGGCCAGCGCTTCGC                                                                                                                 >  8:340494/1‑149   GTCAGCGGTCCTTGAGCAGGGCCAGTACCGCCTCGGCCGCCTGATTGGAGGCGTCACGGCGCAGGGTGCGGTGAATTTCGTCGAAACGTTCGGTCTGCTGGCTTCCATCGCGCACCAGCGGCGCCAGGGTGTTGGCTAGCGCTTCGCTG                                                                                                               >  1:158561/1‑149    TCAGCGGTCCTTGAGCAGGGCCAGTACCGCCTCGGCCGCCTGATTGGAGGCGTCACGGCGCAGGGTGCGGTGAATTTCGTCGAAACGTTCGGTCTGCTGGCTTCCATCGCGCACCAGCGGCGCCAGGGTGTTGGCCAGCGCTTCGCTGG                                                                                                              <  7:309548/149‑1    TCAGCGGTCCTTGAGCAGGGCCAGTACCGCCTCGGCCGCCTGATTGGAGGCGTCACGGCGCAGGGTGCGGTGAATTTCGTCGAAACGTTCGGTCTGCTGGCTTCCATCGCGCACCAGCGGCGCCAGGGTGTTGGCCAGCGCTTCGCTGG                                                                                                              <  7:340494/149‑1                                                                                                               CGCGCACCAGCGGCGCCAGGGTGTTGGCCAGCGCTTCGCTGGTGCGCGATGGAAGCCAGCAGACCGAACGTTTCGACGAAATTCACCGCACCCTGCGCCGTGACGCCTCCAATCAGGCGGCCGAGGCGGTACTGGCCCTGCTCAAGGAC   >  2:365950/1‑149                                                                                                                GCGCACCAGCGGCGCCAGGGTGTTGGCCAGCGCTTCGCTGGTGCGCGATGGAAGCCAGCAGACCGAACGTTTCGACGAAATTCACCGCACCCTGCGCCGTGACGCCTCCAATCAGGCGGCCGAGGCGGTACTGGCCCTGCTCAAGGACC  >  3:290444/1‑149                                                                                                                    ACCAGCGGCGCCAGGGTGTTGGCCAGCGCTTCGCTGGTGCGCGATGGAAGCCAGCAGACCGAACGTTTCGACGAAATTCACCGCACCCTGCGCCGTGACGCCTCCAATCAGGCGGCCGAGGCGGTACTGGC                <  5:58252/131‑1                                                                                                                    ACCAGCGGCGCCAGGGTGTTGGCCAGCGCTTCGCTGGTGCGCGATGGAAGCCAGCAGACCGAACGTTTCGACGAAATTCACCGCACCCTGCGCCGTGACGCCTCCAATCAGGCGGCCGAGGCGGTACTGGC                >  6:58252/1‑131                                                                                                                                                                                                                                                                      ATGTCAGCGGTCCTTGAGCAGGGCCAGTACCGCCTCGGCCGCCTGATTGGAGGCGTCACGGCGCAGGGTGCGGTGAATTTCGTCGAAACGTTCGGTCTGCTGGCTTCCATCGCGCACCAGCGGCGCCAGGGTGTTGGCCAGCGCTTCGCTGGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/1799208‑1799056 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgctggtGCGCGATGGAAGCCAGCAGACCGAACGTTTCGACGAAATTCACCGCACCCTGCGCCGTGACGCCTCCAATCAGGCGGCCGAGGCGGTACTGGCCCTGCTCAAGGACC  >  NC_002947/1799094‑1799200

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.