New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1799056 =	51 (0.870)	4 (0.070)	4/248	NT	6.9%	coding (979/1128 nt)	lpxB	lipid‑A‑disaccharide synthase
	?	NC_002947	1799094 =	59 (1.060)					coding (1017/1128 nt)	lpxB	lipid‑A‑disaccharide synthase

TACAAGCGGCCGATGGTAGTGGCGTACCGCCTGGCGCCCTTGACCTTCTGGATTCTCAAGCGTCTGGTGAAAAGCCCTTACGTGTCATTGCCGAACCTGCTGGCCCAGCGAGAGCTGGTGCCCGAGTTGCTGCAGGACGACGCTACCAGCGAAGCGCTGGCCAACACCCTGGCGCCGCTGGTGCGCGATGGAAGCCAGCAGACCGAACGTTTCGACGAAATTCACCGCACCCTGCGCCGTGACGCCTCCAATCAGGCGGCCGAGGCGGTACTGGCCCTGCTCAAGGACCGCT  >  NC_002947/1798912‑1799203                                                                                                                                                 |                                                                                                                                                    tACAAGCGGCCGATGGTAGTGGCGTACCGCCTGGCGCCCTTGACCTTCTGGATTCTCAAGCGTCTGGTGAAAAGCCCTTACGTGTCATTGCCGAACCTGCTGGCCCAGCGAGAGCTGGTGCCCGAGTTGCTGCAGGACGACGCTACCAg                                                                                                                                                 <  6:148984/149‑1 (MQ=255)           cGATGGTAGTGGCGTACCGCCTGGCGCCCTTGACCTTCTGGATTCTCAAGCGTCTGGTGAAAAGCCCTTACGTGTCATTGCCGAACCTGCTGGCCCAGCGAGAGCTGGTGCCCGAGTTGCTGCAGGACGACGCTACCAGCGAAGCGCTg                                                                                                                                       <  5:71989/149‑1 (MQ=255)             aTGGTAGTGGCGTACCGCCTGGCGCCCTTGACCTTCTGGATTCTCAAGCGTCTGGTGAAAAGCCCTTACGTGTCATTGCCGAACCTGCTGGCCCAGCGAGAGCTGGTGCCCGAGTTGCTGCAGGACGACGCTACCAGCGAAGCGCTGGc                                                                                                                                     >  8:198501/1‑149 (MQ=255)                      gCGTACCGCCTGGCGCCCTTGACCTTCTGGATTCTCAAGCGTCTGGTGAAAAGCCCTTACGTGTCATTGCCGAACCTGCTGGCCCAGCGAGAGCTGGTGCCCGAGTTGCTGCAGGACGACGCTACCAGCGAAGCGCTGGCCAACACCCt                                                                                                                            <  6:134193/149‑1 (MQ=255)                        gTACCGCCTGGCGCCCTTGACCTTCTGGATTCTCAAGCGTCTGGTGAAAAGCCCTTACGTGTCATTGCCGAACCTGCTGGCCCAGCGAGAGCTGGTGCCCGAGTTGCTGCAGGACGACGCTACCAGCGAAGCGCTGGCCAACACCCTgg                                                                                                                          >  5:327227/1‑149 (MQ=255)                            cGCCTGGCGCCCTTGACCTTCTGGATTCTCAAGCGTCTGGTGAAAAGCCCTTACGTGTCATTGCCGAACCTGCTGGCCCAGCGAGAGCTGGTGCCCGAGTTGCTGCAGGACGACGCTACCAGCGAAGCGCTGGCCACCACCCTGGcgcc                                                                                                                      >  2:136599/1‑149 (MQ=255)                             gCCTGGCGCCCTTGACCTTCTGGATTCTCAAGCGTCTGGTGAAAAGCCCTTACGTGTCATTGCCGAACCTGCTGGCCCAGCGAGAGCTGGTGCCCGAGTTGCTGCAGGACGACGCTACAAGc                                                                                                                                                >  8:134072/1‑122 (MQ=255)                               cTGGCGCCCTTGACCTTCTGGATTCTCAAGCGTCTGGTGAAAAGCCCTTACGTGTCATTGCCGAACCTGCTGGCCCAGCGAGAGCTGGTGCCCGAGTTGCTGCAGGACGACGCTACCAGCGAAGCGCTGGCCAACACCCTGGCGCCGCt                                                                                                                   <  4:82350/149‑1 (MQ=255)                                tGGCGCCCTTGACCTTCTGGATTCTCAAGCGTCTGGTGAAAAGCCCTTACGTGTCATTGCCGAACCTGCTGGCCCAGCGAGAGCTGGTGCCCGAGTTGCTGCAGGACGACGCTACCAGCGAAGCGCTGGCCAACACCCTGGCGCCGCTg                                                                                                                  >  3:363531/1‑149 (MQ=255)                                  gcgcCCTTGACCTTCTGGATTCTCAAGCGTCTGGTGAAAAGCCCTTACGTGTCATTGCCGAACCTGCTGGCCCAGCGAGAGCTGGTGCCCGAGTTGCTGCAGGACGACGCTACCAGCGAAGCGCTGGCCAACACCCTGGCGCCGCTGGt                                                                                                                >  4:322295/1‑149 (MQ=255)                                      ggtccttgagcagggccagtaccgcctcggccgcctgattggaggcgtcacggcgcagggtgcggtgaatttcgtcgaaacgttcggtctgctggcttccatcgcgcACCAGCGAAGCGCTGGCCAACACCCTGGCGCCGCTGGTgcgc                                                                                                            >  3:290444‑M1/108‑149 (MQ=255)                                       gtccttgagcagggccagtaccgcctcggccgcctgattggaggcgtcacggcgcagggtgcggtgaatttcgtcgaaacgttcggtctgctggcttccatcgcgcACCAGCGAAGCGCTGGCCAACACCCTGGCGCCGCTGGTGcgcg                                                                                                           >  2:365950‑M1/107‑149 (MQ=255)                                          gACCTTCTGGATTCTCAAGCGTCTGGTGAAAAGCCCTTACGTGTCATTGCCGAACCTGCTGGCCCAGCGAGAGCTGGTGCCCGAGTTGCTGCAGGACGACGCTACCAGCGAAGCGCTGGCCAACACCCTGGCGCCGCTGGTGCGCGAt                                                                                                         <  7:198501/148‑1 (MQ=255)                                             cTTCTGGATTCTCAAGCGTCTGGTGAAAAGCCCTTACGTGTCATTGCCGAACCTGCTGGCCCAGCGAGAGCTGGTGCCCGAGTTGCTGCAGGACGACGCTACCAGCGAAGCGCTGGCCAACACCCTGGCGCCGCTGGTGCGCGATGGaa                                                                                                     <  8:204850/149‑1 (MQ=255)                                             cTTCTGGATTCTCAAGCGTCTGGTGAAAAGCCCTTACGTGTCATTGCCGAACCTGCTGGCCCAGCGAGAGCTGGTGCCCGAGTTGCTGCAGGACGACGCTACCAGCGAAGCGCTGGCCAACACCCTGGCGCCGCTGGTGCGCGATGGaa                                                                                                     <  6:327227/149‑1 (MQ=255)                                              ttCTGGATTCTCAAGCGTCTGGTGAAAAGCCCTTACGTGTCATTGCCGAACCTGCTGGCCCAGCGAGAGCTGGTGCCCGAGTTGCTGCAGGACGACGCTACCAGCGAAGCGCTGGCCAACACCCTGGCGCCGCTGGTGCGCGATgg                                                                                                       >  6:41496/1‑146 (MQ=255)                                              ttCTGGATTCTCAAGCGTCTGGTGAAAAGCCCTTACGTGTCATTGCCGAACCTGCTGGCCCAGCGAGAGCTGGTGCCCGAGTTGCTGCAGGACGACGCTACCAGCGAAGCGCTGGCCAACACCCTGGCGCCGCTGGTGCGCGATgg                                                                                                       >  6:36035/1‑146 (MQ=255)                                              ttCTGGATTCTCAAGCGTCTGGTGAAAAGCCCTTACGTGTCATTGCCGAACCTGCTGGCCCAGCGAGAGCTGGTGCCCGAGTTGCTGCAGGACGACGCTACCAGCGAAGCGCTGGCCAACACCCTGGCGCCGCTGGTGCGCGATGGAAg                                                                                                    >  4:73871/1‑149 (MQ=255)                                                cTGGATTCTCAAGCGTCTGGTGAAAAGCCCTTACGTGTCATTGCCGAACCTGCTGGCCCAGCGAGAGCTGGTGCCCGAGTTGCTGCAGGACGACGCTACCAGCGAAGCGCTGGCCAACACCCTGGCGCCGCTGGTGCGCGATGGaa                                                                                                     <  5:41496/146‑1 (MQ=255)                                                cTGGATTCTCAAGCGTCTGGTGAAAAGCCCTTACGTGTCATTGCCGAACCTGCTGGCCCAGCGAGAGCTGGTGCCCGAGTTGCTGCAGGACGACGCTACCAGCGAAGCGCTGGCCAACACCCTGGCGCCGCTGGTGCGCGATGGaa                                                                                                     <  5:36035/146‑1 (MQ=255)                                                cTGGATTCTCAAGCGTCTGGTGAAAAGCCCTTACGTGTCATTGCCGAACCTGCTGGCCCAGCGAGAGCTGGTGCCCGAGTTGCTGCAGGACGACGCTACCAGCGAAGCGCTGGCCAACACCCTGGCGCCGCTGGTGCGCGATGGAAGc                                                                                                   <  3:73871/148‑1 (MQ=255)                                                cTGGATTCTCAAGCGTCTGGTGAAAAGCCCTTACGTGTCATTGCCGAACCTGCTGGCCCAGCGAGAGCTGGTGCCCGAGTTGCTGCAGGACGACGCTACCAGCGAAGCGCTGGCCAACACCCTGGCGCCGCTGGTGCGCGATGGAAGc                                                                                                   <  5:85349/148‑1 (MQ=255)                                                  ggATTCTCAAGCGTCTGGTGAAAAGCCCTTACGTGTCATTGCCGAACCTGCTGGCCCAGCGAGAGCTGGTGCCCGAGTTGCTGCAGGACGACGCTACCAGCGAAGCGCTGGCCAACACCCTGGCGCCGCTGGTGCGCGATGGAAGCcag                                                                                                >  3:163697/1‑149 (MQ=255)                                                    gccagtaccgcctcggccgcctgattggaggcgtcacggcgcagggtgcggtgaatttcgtcgaaacgttcggtctgctggcttccatcgcgcACCAGCGAAGCGCTGGCCAACACCCTGGCGCCGCTGGt                                                                                                                <  5:58252‑M1/38‑1 (MQ=255)                                                    gccagtaccgcctcggccgcctgattggaggcgtcacggcgcagggtgcggtgaatttcgtcgaaacgttcggtctgctggcttccatcgcgcACCAGCGAAGCGCTGGCCAACACCCTGGCGCCGCTGGt                                                                                                                >  6:58252‑M1/94‑131 (MQ=255)                                                          aaGCGTCTGGTGAAAAGCCCTTACGTGTCATTGCCGAACCTGCTGGCCCAGCGAGAGCTGGTGCCCGAGTTGCTGCAGGACGACGCTACCAGCGAAGCGCTGGCCAACACCCTGGCGCCGCTGGTGCGCGATGGAAGCCAGCAGAc                                                                                           <  6:63512/146‑1 (MQ=255)                                                           aGCGTCTGGTGAAAAGCCCTTACGTGTCATTGCAGAACCTGCTGGCCCAGCGAGAGCTGGTGCCCGAGTTGCTGCAGGACGACGCTACCAGCGAAGAGCTGGCCAACACCCTGGCGCCGCTGGTGCGCGATGGAAGCCAGCAGACCGaa                                                                                       <  5:139679/149‑1 (MQ=255)                                                               tCTGGTGAAAAGCCCTTACGTGTCATTGCCGAACCTGCTGGCCCAGCGAGAGCTGGTGCCCGAGTTGCTGCAGGACGACGCTACCAGCGAAGCGCTGGCCAACACCCTGGCGCCGCTGGTGCGCGATGGAAGCCAGCAGACCGAACGtt                                                                                   >  6:307934/1‑149 (MQ=255)                                                                cTGGTGAAAAGCCCTTACGTGTCATTGCCGAACCTGCTGGCCCAGCGAGAGCTGGTGCCCGAGTTGCTGCAGGACGACGCTACCAGCGAAGCGCTGGCCAACACCCTGGCGCCGCTGGTGCGCGATg                                                                                                        <  2:354153/127‑1 (MQ=255)                                                                cTGGTGAAAAGCCCTTACGTGTCATTGCCGAACCTGCTGGCCCAGCGAGACCTGGTGCCCGAGTTGCTGCAGGACGACGCTACCAGCGAAGCGCTGGCCAACACCCTGGCGCCGCTGGTGCGCGATg                                                                                                        >  1:354153/1‑127 (MQ=255)                                                                 tGGTGAAAAGCCCTTACGTGTCATTGCCGAACCTGCTGGCCCAGCGAGAGCTGGTGCCCGAGTTGCTGCAGGACGACGCTACCAGCGAAGCGCTGGCCAACACCCTGGCGCCGCTGGTGCGCGATGGAAGCCAGCAGACCGAACGTTTc                                                                                 >  4:318844/1‑149 (MQ=255)                                                                                  gtgtCATTGCCGAACCTGCTGGCCCAGCGAGAGCTGGTGCCCGAGTTGCTGCAGGACGACGCTACCAGCGAAGCGCTGGCCAACACCCTGGCGCCGCTGGTGCGCGATGGAAGCCAGCAGACCGAACGTTTCGACGAAATTCa                                                                      >  6:213346/1‑143 (MQ=255)                                                                                  gtgtCATTGCCGAACCTGCTGGCCCAGCGAGAGCTGGTGCCCGAGTTGCTGCAGGACGACGCTACCAGCGAAGCGCTGGCCAACACCCTGGCGCCGCTGGTGCGCGATGGAAGCCAGCAGACCGAACGTTTCGACGAAATTCa                                                                      <  5:213346/143‑1 (MQ=255)                                                                                       aTTGCCGAACCTGCTGGCCCAGCGAGAGCTGGTGCCCGAGTTGCTGAAGGACGACGCTACCAGCGAAGCGCTGGCCAACACCCTGGCGCCGCTGGTGCGCGATGGAAGCCAGCAGACCGAACGTTTCGACGAAATTCACCGCACCCTgc                                                           >  1:182637/1‑149 (MQ=255)                                                                                           ccGAACCTGCTGGCCCAGCGAGAGCTGGTGCCCGAGTTGCTGCAGGACGACGCTACCAGCGAAGCGCTGGCCAACACCCTGGCGCCGCTGGTGCGCGATGGAAGCCAGCAGACCGAACGTTTCGACGAAATTCACCGCACCCTGCGcc                                                        <  3:322295/148‑1 (MQ=255)                                                                                                 ctgctgGCCCAGCGAGAGCTGGTGCCCGAGTTGCTGCAGGACGACGCTACCAGCGAAGCGCTGGCCAACACCCTGGCGCCGCTGGTGCGCGATGGAAGCCAGCAGACCGAACGTTTCGACGAAATTCACCGCACCCTGCGCCGTGACGc                                                 >  5:195592/1‑149 (MQ=255)                                                                                                  tgctgGCCCAGCGAGAGCTGGTGCCCGAGTTGCTGCAGGACGACGCTACCAGCGAAGCGCTGGCCAACACCCTGGCGCCGCTGGTGCGCGATGGAAGCCAGCAGACCGAACGTTTCGACGAAATTCACCGCACCCTGCGCCGTGACGcc                                                >  7:320496/1‑149 (MQ=255)                                                                                                  tgctgGCCCAGCGAGAGCTGGTGCCCGAGTTGCTGCAGGACGACGCTACCAGCGAAGCGCTGGCCAACACCCTGGCGCCGCTGGTGCGCGATGGAAGCCAGCAGACCGAACGTTTCGACGAAATTCACCGCACCCTGCGCCGTGACGcc                                                >  4:328512/1‑149 (MQ=255)                                                                                                      ggCCCAGCGAGAGCTGGTGCCCGAGTTGCTGCAGGACGACGCTACCAGCGAAGCGCTGGCCAACACCCTGGCGCCGCTGGTGCGCGATGGAAGCCAGCAGACCGAACGTTTCGACGAAATTCACCGCACCCTGCGCCGTGACGCCTcc                                             >  5:176572/1‑148 (MQ=255)                                                                                                         ccAGCGAGAGCTGGTGCCCGAGTTGCTGCAGGACGACGCTACCAGCGAAGCGCTGGCCAACACCCTGGCGCCGCTGGTGCGCGATGGAAGCCAGCAGACCGAACGTTTCGACGAAATTCACCGCCCCCTGCGCCGTGCCGCCTCCAATc                                         >  8:163090/1‑149 (MQ=255)                                                                                                         ccAGCGAGAGCTGGTGCCCGAGTTGCTGCAGGACGACGCTACCAGCGAAGCGCTGGCCAACACCCTGGCGCCGCTGGTGCGCGATGGAAGCCAGCAGACCGAACGTTTCGACGAAATTCACCGCACCCTGCGCCGTGACGCCTCCAAt                                          >  1:99067/1‑148 (MQ=255)                                                                                                                   cTGGTGCCCGAGTTGCTGCAGGACGACGCTACCAGCGAAGCGCTGGCCAACACCCTGGCGCCGCTGGTGCGCGATGGAAGCCAGCAGACCGAACGTTTCGACGAAATTCACCGCACCCTGCGCCGTGACGCCTCCAATCAGGCGGCCGa                               <  6:176572/149‑1 (MQ=255)                                                                                                                     ggTGCCCGAGTTGCTGCAGGACGACGCTACCAGCGAAGCGCTGGCCAACACCCTGGCGCCGCTGGTGCGCGATGGAAGCCAGCAGACCGAACGTTTCGACGAAATTCACCGCACCCTGCGCCGTGAc                                                   >  6:223805/1‑127 (MQ=255)                                                                                                                     ggTGCCCGAGTTGCTGCAGGACGACGCTACCAGCGAAGCGCTGGCCAACACCCTGGCGCCGCTGGTGCGCGATGGAAGCCAGCAGACCGAACGTTTCGACGAAATTCACCGCACCCTGCGCCGTGAc                                                   <  5:223805/127‑1 (MQ=255)                                                                                                                      gTGCCCGAGTTGCTGCAGGACGACGCTACCAGCGAAGCGCTGGCCAACACCCTGGCGCCGCTGGTGCGCGATGGAAGCCAGCAGACCGAACGTTTCGACGAAATTCACCGCACCCTGCGCCGTGACGCCTCCAATCAGGCGGCCGAgg                             <  2:100240/148‑1 (MQ=255)                                                                                                                      gTGCCCGAGTTGCTGCAGGACGACGCTACCAGCGAAGCGCTGGCCAACACCCTGGCGCCGCTGGTGCGCGATGGAAGCCAGCAGACCGAACGTTTCGACGAAATTCACCGCACCCTGCGCCGTGACGCCTCCAATCAGGCGGCCGAg                              <  5:307934/147‑1 (MQ=255)                                                                                                                      gTGCCCGAGTTGCTGCAGGACGACGCTACCAGCGAAGCGCTGGCCAACACCCTGGCGCCGCTGGTGCGCGATGGAAGCCAGCAGACCGAACGTTTCGACGAAATTCACCGCACCCTGCGCCGTGACGCCTCCAATCAGGCGGCCGAGGc                            <  6:195592/149‑1 (MQ=255)                                                                                                                       tGCCCGAGTTGCTGCAGGACGACGCTACCAGCGAAGCGCTGGCCAACACCCTGGCGCCGCTGGTGCGCGATGGAAGCCAGCAGACCGAACGTTTCGACGAAATTCACCGCACCCTGCGCCGTGACGCCTCCAATCAGGCGGCCGAGGCg                           >  3:140119/1‑149 (MQ=255)                                                                                                                          ccGAGTTGCTGCAGGACGACGCTACCAGCGAAGCGCTGGCCAACACCCTGGCGCCGCTGGTGCGCGATGGAAGCCAGCAGACCGAACGTTTCGACGAAATTCACCGCACCCTgcgc                                                         <  8:267648/116‑1 (MQ=255)                                                                                                                          ccGAGTTGCTGCAGGACGACGCTACCAGCGAAGCGCTGGCCAACACCCTGGCGCCGCTGGTGCGCGATGGAAGCCAGCAGACCGAACGTTTCGACGAAATTCACCGCACCCTgcgc                                                         >  7:267648/1‑116 (MQ=255)                                                                                                                           cGAGTTGCTGCAGGACGACGCTACCAGCGAAGCGCTGGCCAACACCCTGGCGCCGCTGGTGCGCGATGGAAGCCAGCAGACCGAACGTTTCGACGAAATTCACCGCACCCTGCGCCGTGACGCCTCCAATCAGGCGGCCGAGGCGGTAc                       >  5:253522/1‑149 (MQ=255)                                                                                                                                  ctgcAGGACGACGCTACCAGCGAAGCGCTAGCCAACACCCTGGCGCCGCTGGTGCGCGATGGAAGCCAGCAGACCGAACGTTTCGACGAAATTCACCGCACCCTGCGCCGTGACGCCTCCAATCAGGCGGCCGAGGCGGTACTGGCCCt                >  2:158561/1‑149 (MQ=255)                                                                                                                                   tgcAGGACGACGCTACCAGCGAAGCGCTGGCCAACACCCTGGCGCCGCTGGTGCGCGATGGAAGCCAGCAGACCGAACGTTTCGACGAAATTCACCGCACCCTGCGCCGTGACGCCTCCAATCAGGCGCCCGAGGCGGTACTGGCCCt                >  3:221740/1‑148 (MQ=255)                                                                                                                                     cAGGACGACGCTACCAGCGAAGCGCTGGCCAACACCCTGGCGCCGCTGGTGCGCGATGGAAGCCAGCAGACCGAACGTTTCGACGAAATTCACCGCACCCTGCGCCGTGACGCCTCCAATCAGGCGGCCGAGGCGGTACTGGCCCTGCt             >  6:375926/1‑149 (MQ=255)                                                                                                                                        gacgacGCTACCAGCGAAGCGCTGGCCAACACCCTGGCGCCGCTGGTGCGCGATGGAAGCCAGCAGACCGAACGTTTCGACGAAATTCACCGCACCCTGCGCCGTGACGCCTCCAATCAGGCGGCCGAGGCGGTACTGGCCCTGCTc            >  8:295496/1‑147 (MQ=255)                                                                                                                                         acgacgCTACCAGTGAAGCGCTGGCCAACACCCTGGCGCCGCTGGTGCGCGATGGAAGCCAGCAGACCGAACGTTTCGACGAAATTCACCGCACCCTGCGCCGTGACGCCTCCAATCAGGCGGCCGAGGCGGTACTGGCCCTGCTCAAg         <  1:1106/149‑1 (MQ=255)                                                                                                                                             cgCTACCAGCGAAGCGCTGGCCAACACCCTGGCGCCGCTGGTGCGCGATGGAAGCCAGCAGACCGAACGTTTCGACGAAATTCACCGCACCCTGCGCCGTGACGCCTCCAATCAGGCGGCCGAGGCGGTACTGGCCCTGCTCAAGGAcc     >  8:237997/1‑149 (MQ=255)                                                                                                                                                tACCAGCGAAGCGCTGGCCAACACCCTGGCGCCGCTGGTGCGCGATGGAAGCCAGCAGACCGAACGTTTCGACGAAATTCACCGCACCCTGCGCCGTGACGCCTCCAATCAGGCGGCCGAGGCGGTACTGGCCCTGCTCAAGGACCGCt  >  3:272120/1‑149 (MQ=255)                                                                                                                                                 |                                                                                                                                                    TACAAGCGGCCGATGGTAGTGGCGTACCGCCTGGCGCCCTTGACCTTCTGGATTCTCAAGCGTCTGGTGAAAAGCCCTTACGTGTCATTGCCGAACCTGCTGGCCCAGCGAGAGCTGGTGCCCGAGTTGCTGCAGGACGACGCTACCAGCGAAGCGCTGGCCAACACCCTGGCGCCGCTGGTGCGCGATGGAAGCCAGCAGACCGAACGTTTCGACGAAATTCACCGCACCCTGCGCCGTGACGCCTCCAATCAGGCGGCCGAGGCGGTACTGGCCCTGCTCAAGGACCGCT  >  NC_002947/1798912‑1799203

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.