New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2069969	NA (NA)	4 (0.070)	4/248	NT	NA	coding (343/1422 nt)	PP_1846	group II intron‑encoding maturase
	?	NC_002947	= 2070049	NA (NA)					coding (423/1422 nt)	PP_1846	group II intron‑encoding maturase

CAACCTCAGGCGTGCGTATCAACGCGTGGTTAGCAACAAGGGGGCTCCGGGTGCCGATGGCATGACGGTCGCTGACTTGGCGGGCTACGTGAAACAGTATTGGCCAACCCTCAAGGCCAGGTTGCTGGCCGGTGAATACCATCCCCAAGCAGTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/2069815‑2069969 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcagtgcTTGCTGGATCAGGCGATCCACGACGCTGGGGATACCCAGTTGCCGTGTGCCGCCCTGCGGCTTGGGAATTTCAACCGCTCGCACTGCTTGGGGATGGTATTCACCGGCCAGCAACCTGGCCTTGAGGGTTGGCCAATACTGTTTCAC  <  NC_002947/2070049‑2069903                                                                                                                                                                                                                                                                                                                CAACCTCAGGCGTGCGTATCAACGCGTGGTTAGCAACAAGGGGGCTCCGGGTGCCGATGGCATGACGGTCGCTGACTTGGCGGGCTACGTGAAACAGTATTGGCCAACCCTCAAGGCCAGGTTGCTGGCCGGTGAATACCATCCCCAAG                                                                                                                                                           <  3:38813/149‑1    CCTCAGGCGTGTGTATCAACGCGTGGTTAGCAACAAGGGGGCTCCGGGTGCCGATGGCATGACGGTCGCTGACTTGGCGGGCTACGTGAAACAGTATTGGCCAACCCTCAAGGCCAGGTTGCTGGCCGGTGAATACCATCCCCAAGCAG                                                                                                                                                        >  2:250371/1‑149    CCTCAGGCGTGCGTATCAACGCGTGGTTAGCAACAAGGGGGCTCCGGGTGCCGATGGCATGACGGTCGCTGACTTGGTGGGCTACGTGAAACAGTATTGGCCAACCCTCAAGGCCAGGTTGCTGGCCGGTGAATACCATCCCCAAGCAG                                                                                                                                                        >  4:157173/1‑149    CCTCAGGCGTGCGTATCAACGCGTGGTTAGCAACAAGGGGGCTCCGGGCGCCGATGGCATGACGGTCGCTGACTTGGCGGGCTACGTGAAACAGTATTGGCCAACCCTCAAGGCCAGGTTGCTGGCCGGTGAATACCATCCCCAAGCAG                                                                                                                                                        <  2:227619/149‑1     CTCAGGCGTGCGTATCAACGCGTGGTTAGCAACAAGGGGGCTCCGGGTGCCGATGGCATGACGGTCGCTGACTTGGCGGGCTACGTGAAACAGTATTGGCCAACCCTCAAGGCCAGGTTGCTGGCCGGTGAATACCATCCCCAAGCAGT                                                                                                                                                       <  8:137999/149‑1     CTCAGGCGTGCGTATCAACGCGTGGTTAGCAACAAGGGGGCTCCGGGTGCCGATGGCATGACGGTCGCTGACTTGGCGGGCTACGTGAAACAGTATTGGCCAACCCTCAAGGCCAGGTTGCTGGCCGGTGAATACCATCCCCAAGCAGT                                                                                                                                                       >  6:8866/1‑149     CTCAGGCGTGCGTATCAACGCGTGGTTAGCAACAAGGGGGCTCCGGGTGCCGATGGCATGACGGTCGCTGACTTGGCGGGCTACGTGAAACAGTATTGGCCAACCCTCAAGGCCAGGTTGCTGGCCGGTGAATACCATCCCCAAGC                                                                                                                                                          >  1:135809/1‑146     CTCAGGCGTGCGTATCAACGCGTGGTTAGCAACAAGGGGGCTCCGGGTGCCGATGGCATGACGGTCGCTGACTTGGCGGGCTACGTGAAACAGTATTGGCCAACCCTCAAGGCCAGGTTGCTGGCCGGTGAATACCATCCCCAAGC                                                                                                                                                          <  2:135809/146‑1      TCAGGCGTGCGTATCAACGCGTGGTTAGCAACAAGGGGGCTCCGGGTGCCGATGGCATGACGGTCGCTGACTTGGCGGGCTACGTGAAACAGTATTGGCCAACCCTCAAGGCCAGGTTGCTGGCCGGTGAATACCATCCCCAAGCAGTG                                                                                                                                                      >  3:330058/1‑149        AGGCGTGCGTATCAACGCGTGGTTAGCAACAAGGGGGCTCCGGGTGCCGATGGCATGACGGTCGCTGACTTGGCGGGCTACGTGAAACAGTATTGGCCAACCCTCAAGGCCAGGTTGCTGGCCGGTGAATACCATCCCCAAGCAGTGC                                                                                                                                                     <  4:106818/148‑1        AGGCGTGCGTATCAACGCGTGGTTAGCAACAAGGGGGCTCCGGGTGCCGATGGCATGACGGTCGCTGACTTGGCGGGCTACGTGAAACAGTATTGGCCAACCCTCAAGGCCAGGTTGCTGGCCGGTGAATACCATCCCCAAGCAGTG                                                                                                                                                      <  6:144610/147‑1                                    ACAAGGGGGCTCCGGGTGCCGATGGCATGACGGTCGCTGACTTGGCGGGCTACGTGAAACAGTATTGGCCAACCCTCAAGGCCAGGTTGCTGGCCGGTGAATACCATCCCCAAGCAGTGCTTGCTGGATCAGGCGATCCACGACGCTGG                                                                                                                        >  8:113168/1‑149                                                                                        CGTGAAACAGTATTGGCCAACCCTCAAGGCCAGGTTGCTGGCCGGTGAATACCATCCCCAAGCAGTGCTTGCTGGATCAGGCGATCCACGACGCTGGGGATACCCAGTTGCCGTGTGCCGCCCTGCGGCTTGGGAATTTCAACCGCTC                                                                     <  3:20493/148‑1                                                                                                AGTATTGGCCAACCCTCAAGGCCAGGTTGCTGGCCGGTGAATACCATCCCCAAGCAGTGCTTGCTGGATCAGGCGATCCACGACGCTGGGGATACCCAGTTGCCGTGTGCCGCCCTGCGGCTTGGGAATTTCAACCGCTCGCACTGCTT                                                            <  5:253772/149‑1                                                                                                  TATTGGCCAACCCTCAAGGCCAGGTTGCTGGCCGGTGAATACCATCCCCAAGCAGTGCTTGCTGGATCAGGCGATCCACGACGCTGGGGATACCCAGTTGCCGTGTGCCGCCCTGCGGCTTGGGAATTTCAACCGCTCGCACTGCTTGG                                                          <  7:113168/149‑1                                                                                                                                                     GCAGTGCTTGCTGGATCAGGCGATCCACGACGCTGGGGATACCCAGTTGCCGTGTGCCGCCCTGCGGCTTGGGAATTTCAACCGCTCGCACTGCTTGGGGATGGTATTCACCGGCCAGCAACCTGGCCTTGAGGGTTGG                 >  7:175294/1‑139                                                                                                                                                     GCAGTGCTTGCTGGATCAGGCGATCCACGACGCTGGGGATACCCAGTTGCCGTGTGCCGCCCTGCGGCTTGGGAATTTCAACCGCTCGCACTGCTTGGGGATGGTATTCACCGGCCAGCAACCTGGCCTT                          >  1:163495/1‑130                                                                                                                                                     GCAGTGCTTGCTGGATCAGGCGATCCACGACGCTGGGGATACCCAGTTGCCGTGTGCCGCCCTGCGGCTTGGGAATTTCAACCGCTCGCACTGCTTGGGGATGGTATTCACCGGCCAGCAACCTGGCCTT                          <  2:163495/130‑1                                                                                                                                                     GCAGTGCGTGCTGGAGCAGGCGAGCCACGACGCTGGGGATACCCAGTTGCCGTGTGCCGCCCTGCGGCTTGGGAATTTCAACCGCTCGCACTGCTTGGGGATGGTATTCACCGGCCAGCAACCTGGCCTTGAGGGTTGG                 <  8:175294/139‑1                                                                                                                                                      CAGTGCTTGCTGGATCAGGCGATCCACGACGCTGGGGATACCCAGTTGCCGTGTGCCGCCCTGCGGCTTGGGAATTTCAACCGCTCGCACTGCT                                                             >  5:251409/1‑94                                                                                                                                                      CAGTGCTTGCTGGATCAGGCGATCCACGACGCTGGGGATACCCAGTTGCCGTGTGCCGCCCTGCGGCTTGGGAATTTCAACCGCTCGCACTGCT                                                             <  6:251409/94‑1                                                                                                                                                      CAGTGCTTGCTGGATCAGGCGATCCACGACGCTGGGGATACCCAGTTGCCGTGTGCCGCCCTGCGGCTTGGGAATTTCAACCGCTCGCACTGC                                                              <  2:274775/93‑1                                                                                                                                                      CAGTGCTTGCTGGATCAGGCGATCCACGACGCTGGGGATACCCAGTTGCCGTGTGCCGCCCTGCGGCTTGGGAATTTCAACCGCTCGCACTGC                                                              >  1:274775/1‑93                                                                                                                                                         TGCTTGCTGGATCAGGCGATCCACGACGCTGGGGATACCCAGTTGCCGTGTGCCGCCCTGCGGCTTGGGAATTTCAACCGCTCGCACTGCTTGGGGATGGTATTCACCGGCCAGCAACCTGGCCTTGAGGGTTGGCCAATACTGTTTCA   >  4:44731/1‑149                                                                                                                                                         TGCTTGCTGGATCAGGCGATCCACGACGCTGGGGATACCCAGTTGCCGTGTGCCGCCCTGCGGCTTGGGAATTTCAACCGCTCGCACTGCTAGGGGATGGTATTCACCGGCCAGCAACCTGGCCTTGAGGGTTGGCCAATACTGTTTCA   >  1:365465/1‑149                                                                                                                                                         TGCTTGCTGGATCAGGCGATCCACGACGCTGCGGATACCCAGTTGCCGTGTGCCGCCCTGCGGCTTGGGAATTTCAACCGCTCGCACTGCTTGGGGATGGTATTCACCGGCCAGCAACCTGGCCTTGAGGGTTGGCCAATACTGTTTCA   >  1:250371/1‑149                                                                                                                                                           CTTGCTGGATCAGGGGATCCACGTCGCTGGGGATACCCAGTTGCCGTGTGCCGCCCTGCGGCTTGGGAATTTCAACCGCTCGCACTGCTTGGGGATGGTATTCACCGGCCAGCAACCTGGCCTTGAGGGTTGGCCAATACTGTTTCAC  <  5:333883/148‑1                                                                                                                                                                                                                                                                                                                CAACCTCAGGCGTGCGTATCAACGCGTGGTTAGCAACAAGGGGGCTCCGGGTGCCGATGGCATGACGGTCGCTGACTTGGCGGGCTACGTGAAACAGTATTGGCCAACCCTCAAGGCCAGGTTGCTGGCCGGTGAATACCATCCCCAAGCAGTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/2069815‑2069969 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcagtgcTTGCTGGATCAGGCGATCCACGACGCTGGGGATACCCAGTTGCCGTGTGCCGCCCTGCGGCTTGGGAATTTCAACCGCTCGCACTGCTTGGGGATGGTATTCACCGGCCAGCAACCTGGCCTTGAGGGTTGGCCAATACTGTTTCAC  <  NC_002947/2070049‑2069903

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.