| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 2098428 | 56 (0.950) | 3 (0.060) | 3/234 | NT | 5.7% | coding (1462/2358 nt) | PP_1875 | two‑component system sensor histidine kinase/response regulator |
| ? | NC_002947 | = 2098449 | 50 (0.950) | coding (1441/2358 nt) | PP_1875 | two‑component system sensor histidine kinase/response regulator | |||||
ACGCGGCCATGCAAGGGCGCTGGCGGGATGGCTTCGGTGTGCACGGTCAGCGGCAATTCGGCGGTAAAACAGCTGCCAAAGCCCGGCTCGGAGCGAATGTGCAGGTGGCCCTGCATGGCCTTGCACAGGTTACGCGTCAAAGCCAGGCCCAGGCCGGTGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/2098268‑2098428‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cccaggccggtgccGGCATCACCCGCCAGTACGGTGGCACCGGCCTGGGCCTGGCTTTGACGCGTAACCTGTGCAAGGCCATGCAGGGCCACCTGCACATTCGCTCCGAGCCGGGCTTTGGCAGCTGTTTTACCGCCGAATTGCCGCTGACCG < NC_002947/2098449‑2098311 ACGCGGCCATGCAAGGGCGCTGGCGGGATGGCTTCGGTGTGCACGGTCAGCGGCAATTCGGCGGTAAAACAGCTGCCAAAGCCCGGCTCGGAGCGAATGTGCAGGTGGCCCTGCATGGCCTTGCACAGGTTACGCGTCAAAGCCAGGCC > 1:57340/1‑149ACGCGGCCATGCAAGGGCGCTGGCGGGATGGCTTCGGTGTGCACGGTCAGCGGCAATTCGGCGGTAAAACAGCTGCCAAAGCCCGGCTCGGAGCGAATGTGCAGGTGGCCCTGCATGGCCTTGCACAGGTTACGCGTCAAAGCCAGGCC > 2:163297/1‑149 CATGCAAGGGCGCTGGCGGGATGGCTTCGGTGTGCACGGTCAGCGGCAATTCGGCGGTAAAACAGCTGCCAAAGCCCGGCTCGGAGCGAATGTGCAGGTGGCCCTGCATGGCCTTGCACAGGTTACGCGTCAAAGCCAGGCCCAGGCCG > 7:112935/1‑149 ATGCAAGGGCGCTGGCGGGATGGCTTCGGTGTGCACGGTCAGCGGCAATTCGGCGGTAAAACAGCTGCCAAAGCCCGGCTCGGAGCGAATGTGCAGGTGGCCCTGCATGGCCTTGCACAGGTTACGCGTCAAAGCCAGGCCCAGGCCGG > 3:305532/1‑149 GCGGGATGGCTTCGGTGTGCACGGTCAGCGGCAATTCGGCGGTAAAACAGCTGCCAAAGCCCGGCTCGGAGCGAATGTGCAGGTGGCCCTGCATGGCCTTGCACAGGTTACGCGTCAAAGCCAGGCCCAGGCCGGT < 1:21513/136‑1 GCGGGATGGCTTCGGTGTGCACGGTCAGCGGCAATTCGGCGGTAAAACAGCTGCCAAAGCCCGGCTCGGAGCGAATGTGCAGGTGGCCCTGCATGGCCTTGCACAGGTTACGCGTCAAAGCCAGGCCCAGGCCGGT > 2:21513/1‑136 GGTCAGCGGCAATTCGGCGGTAAAACAGCTGCCAAAGCCCGGCTCGGAGCGAATGTGCAGGTGGCCCTGCATGGCCTTGCACAGGTTACGCGTCAAAGCCAGGCCCAGGCCGGTGCCGGCATCACCCGCCAGTACGGTGGCACCGGCCT < 3:18263/149‑1 ATTCGGCGGTAAAACAGCTGCCAAAGCCCGGCTCGGAGCGAATGTGCAGGTGGCCCTGCATGGCCTTGCACAGGTTACGCGTCAAAGCCAGGCCCAGGC < 5:274536/99‑1 ATTCGGCGGTAAAACAGCTGCCAAAGCCCGGCTCGGAGCGAATGTGCAGGTGGCCCTGCATGGCCTTGCACAGGTTACGCGTCAAAGCCAGGCCCAGGC > 6:274536/1‑99 GGTAAAGCAGCTGCCAAAGCCCGGCTCGGAGCGAATGTGCAGGTGGCCCTGCATGGCCTTGCACAGGTTACGCGTCAAAGCCAGGCCCAGGCCGGTGCCGGCATCACCCGCCAGTACGGTGGCACCGG > 2:173417/1‑128 GGTAAAACAGCTGCCAAAGCCCGGCTCGGAGCGAATGTGCAGGTGGCCCTGCATGGCCTTGCACAGGTTACGCGTCAAAGCCAGGCCCAGGCCGGTGCCGGCATCACCCGCCAGTACGGTGGCACCGG < 1:173417/128‑1 CCCAGGCCGGTGCCGGCATCACCCGCCAGTACGGTGGCACCGGCCTGGGCCTGGCTTTGACGCGTAACCTGTGCAAGGCCATGCAGGGCCACCTGCACATTCGCTCCGAGCCGGGCTTTGGCAGCTGTTTTACCGCCGAATTGCCGCT > 1:165381/1‑148 CCCAGGCCGGTGCCGGCATCACCCGCCAGTACGGTGGCACCGGCCTGGGCCTGGCTTTGACGCGTAACCTGTGCAAGGCCATGCAGGGCCACCTGCACATTCGCTCCGAGCCGGGCTTTGGCAGCTGTTTTACCGCCGAATTGCCGCT > 5:76015/1‑148 CCAGGTCGGTGCCGGCATCACCCGCCAGTACGGTGGCACCGGCCTGGGCCTGGCTTTGACGCGTAACCTGTGCAAGGCCATGCAGGGCCACCTGCACATTCGCTCCGAGCCGGGCTTTGGCAGCTGTTTTACCGCCGAATTGCCGCTGA > 3:354022/1‑149 CAGGCCGGTGCCGGCATCACCCGCCAGTACGGTGGCACCGGCCTGGGCCTGGCTTTGACGCGTAACCTGTGCAAGGCCATGCAGGGCCACCTGCACATTCGCTCCGAGCCGGGCTTTGGCAGCTGTTTTACCGCCGAATTGCCGCTGAC > 5:43396/1‑149 GGCCGGTGCCGGCATCACCCGCCAGTACGGTGGCACCGGCCTGGGCCTGGCTTTGACGCGTAACCTGTGCAAGGCCATGCAGGGCCACCTGCACATTCGCTCCGAGCCGGGCTTTGGCAGCTGTTTTACCGCCGAATTGCCGCTGACCG < 1:200540/149‑1 ACGCGGCCATGCAAGGGCGCTGGCGGGATGGCTTCGGTGTGCACGGTCAGCGGCAATTCGGCGGTAAAACAGCTGCCAAAGCCCGGCTCGGAGCGAATGTGCAGGTGGCCCTGCATGGCCTTGCACAGGTTACGCGTCAAAGCCAGGCCCAGGCCGGTGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/2098268‑2098428‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cccaggccggtgccGGCATCACCCGCCAGTACGGTGGCACCGGCCTGGGCCTGGCTTTGACGCGTAACCTGTGCAAGGCCATGCAGGGCCACCTGCACATTCGCTCCGAGCCGGGCTTTGGCAGCTGTTTTACCGCCGAATTGCCGCTGACCG < NC_002947/2098449‑2098311 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |