| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 2132999 = | 60 (1.020) | 4 (0.070) | 4/248 | NT | 6.8% | coding (13/780 nt) | PP_1890 | type I pili chaperone protein FimC |
| ? | NC_002947 | 2133027 = | 53 (0.950) | intergenic (‑16/+38) | PP_1890/fimI | type I pili chaperone protein FimC/type I pili subunit FimI | |||||
TACCGTTCCACTGCCAGCACCGTGACGCACGGCCTTGCATCCGCCCAGGTTCGTTACACCGTCGACTATCAATAATTACGCATAAATTCTGTGCAGTCCTTGCACGGTTAAACCATCCAGGCGTAGTTGTGCGTCTGGATG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/2133139‑2132999‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctggatgGTTTAACCGTGCAAGGACTGCACAGAATTTATGCGTAATTATTGATAGTCGACGGTGTAACGAACCTGGGCGGATGCAAGGCCGTGCGTCACGGTGCTGGCAGTGGAACGGTAGTAGGCGTCGAACCGGAGGTCGGTTGGGCCTGTC > NC_002947/2133027‑2133173 TACCGTTCCACTGCCAGCACCGTGACGCACGGCCTTGCATCCGCCCAGGTTCGTTACACCGTCGACTATCAATAATTACGCATAAATTCTGTGCAGTCCTTGCACGGTTAAACCATCCAGGCGTAGTTGTGCGTCTGGAT > 1:366025/1‑140TACCGTTCCACTGCCAGCACCGTGACGCACGGCCTTGCATCCGCCCAGGTTCGTTACACCGTCGACTATCAATAATTACGCATAAATTCTGTGCAGTCCTTGCACGGTTAAACCATCCAGGCGTAGTTGTGCGTCTGGAT < 2:366025/140‑1TACCGTTCCACTGCCAGCACCGTGACGCACGGCCTTGCATCCGCCCAGGTTCGTTACACCGTCGACTATCAATAAATACGCATAAATTCTGTGCAGGCCTTGCACGGTTAAACCATCCAGGCGTAGTTGTGCGTCTCGATGagatagg > 7:60373/1‑141TACCGTTCCACTGCCAGCACCGGGTCGCACGGCCTTGCATCCGCCCATGTTCGTTACACCGTCGACTATCAATAATTACGCATATATTCTGTGCAGTCGTTGCACTGTTAAACCATGCAGGCGTAGTTGTGCGTGTGGAT < 8:60373/140‑1 CCACTGCCAGCACCGTGACGCACGGCCTTGCATCCGCCCAGGTTCGTTACACCGTCGACTATCAATAATTACGCATAAATTCTGTGCAGTCCTTGCACGGTTAAACCATCCAGGCGTAGTTGTGCGTCT > 5:117248/1‑129 CCACTGCCAGCACCGTGACGCACGGCCTTGCATCCGCCCAGGTTCGTTACACCGTCGACTATCAATAATTACGCATAAATTCTGTGCAGTCCTTGCACGGTTAAACCATCCAGGCGTAGTTGTGCGTCT < 6:117248/129‑1 ACGGTTAAACCATCCAGGCGTAGTTGTGCGTCTGGATGGTTTAACCGTGCAAGGACTGCACAGAATTTATGCGTAATTATTGATAGTCGACG > 7:200972/1‑92 ACGGTTAAACCATCCAGGCGTAGTTGTGCGTCTGGATGGTTTAACCGTGCAAGGACTGCACAGAATTTATGCGTAATTATTGATAGTCGACG < 8:200972/92‑1 CATCCAGGCGTAGTTGTGCGTCTGGATGGTTTAACCGTGCAAGGACTGCACAGAATTTAT > 5:17613/1‑60 CATCCAGGCGTAGTTGTGCGTCTGGATGGTTTAACCGTGCAAGGACTGCACAGAATTTAT < 6:17613/60‑1 GGATGGTTTAACCGTGCAAGGACTGCACAGAATTTATGCGTAATTATTGATAGTCGACGGTGTAACGAACCTGGGCGGATGCAAGGCCGTGCGTCACGGTGCTGGCAGTGGAACGGTAGTAGGCGTCGAACCGGAGGTCGGTTGGGCCT > 8:165803/1‑149 ATGGTTTAACCGTGCAAGGACTGCACAGAATTTATGCGTAATTATTGATAGTCGACGGTGTAACGAACCTGGGCGGATGCAAGGCCGTGCGTCACGGTGCTGGCAGTGGAACGGTAGTAGGCGTCGAACCGGAGGTCGGTTGGGCCTGT > 2:235524/1‑149 ATGGTTTAACCGTGCAAGGACTGCACAGAATTTATGCGTAATTATTGATAGTCGACGGTGTAACGAACCTGGGCGGATGCAAGGCCGTGCGTCACGGTGCTGGCAGTGGAACGGTAGTAGGCGTCGAACCGGAGGTCGGTTGGGCCTGT < 7:153612/149‑1 GGTTTAACCGTGCAAGGACTGCACAGAATTTATGCGTAATTATTGATAGTCGACGGTGTAACGAACCTGGGCGGATGCAAGGCCGTGCGTCACGGTGCTGGCAGTGGAACGGTAGTAGGCGTCGAACCGGAGGTCGGTTGGGCCTGTC < 7:258575/148‑1 TACCGTTCCACTGCCAGCACCGTGACGCACGGCCTTGCATCCGCCCAGGTTCGTTACACCGTCGACTATCAATAATTACGCATAAATTCTGTGCAGTCCTTGCACGGTTAAACCATCCAGGCGTAGTTGTGCGTCTGGATG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/2133139‑2132999‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctggatgGTTTAACCGTGCAAGGACTGCACAGAATTTATGCGTAATTATTGATAGTCGACGGTGTAACGAACCTGGGCGGATGCAAGGCCGTGCGTCACGGTGCTGGCAGTGGAACGGTAGTAGGCGTCGAACCGGAGGTCGGTTGGGCCTGTC > NC_002947/2133027‑2133173 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |