| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 2229008 | 49 (0.830) | 4 (0.070) | 4/244 | NT | 8.5% | coding (144/783 nt) | ycfH | tRNA D‑aminoacylase |
| ? | NC_002947 | = 2229057 | 40 (0.730) | coding (193/783 nt) | ycfH | tRNA D‑aminoacylase | |||||
CCGTTATCCCATGCTCGTAGATTCCCATTGCCACCTCGACCGTCTTGA‑CCTCACTGCTCACCAGGGCTCCCTCGACGCTGCCCTGCAGGCGGCGCGTGAGCGTGGGGTCGGGCATTTCCTGTGCATTGGCGTCAGTGCCGAGAATGCGGGTGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/2228855‑2229008‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgggtgcaCGCCCACCGAGCAGTCGACGTCAGCGTACTGCTCGCTCAGCGCCTTCACTGCACCCGCATTCTCGGCACTGACGCCAATGCACAGGAAATGCCCGACCCCACGCTCACGCGCCGCCTGCAGGGCAGCGTCGAGGGAGCCCTGGTGAG < NC_002947/2229057‑2228911 CCGTTATCCCATGCTCGTAGATTCCCATTGCCACCTCGACCGTCTTGAGCCTCACTGCTCACCAGGGCTCCCTCGACGCTGCCCTGCAGGCGGCGCGTGAGCGTGGGGTCGGGCATTTCCTGTGCATTGGCGTCAGTGCCGAGAATGCG > 1:271517/1‑149CCGTTATCCCATGCTCGTAGATTCCCATTGCCACCTCGACCGTCTTGA‑CCTCACTGCTCACCAGGGCTCCCTCGACGCTGCCCTGCAGGCGGCGCGTGAGCGTGGGGTCGGGCATTTCCTGTGCATTGGCGTCAGTGCCGAGAATGCGG < 8:184975/149‑1CCGTTATCCCATGCTCGTAGATTCCCATTGCCACCTCGACCGTCTTGA‑CCTCACTGCTCACCAGGGCTCCCTCGACGCTGCCCGGCAGGCGTCGCGTGAGCGTGGGGTCGGGCATTTCCTGTGCATTGGCGTCAGTGCCGAGAATGCGG < 5:259335/149‑1 CGTTATCCCATGCTCGTAGATTCCCATTGCCACCTCGACCGTCTTGA‑CCTCACTGCTCACCAGGGCTCCCTCGACGCTGCCCTGCAGGCGGCGCGTGAGCGTGGGGTCGGGCATTTCCTGTGCATTGGCGTCAGTGCCGAGAATGCGGG > 6:65739/1‑149 GTTATCCCATGCTCGTAGATTCCCATTGCCACCTCGACCGTCTTGA‑CCTCACTGCTCACCAGGGCTCCCTCGACGCTGCCCTGCAGGCGGCGCGTGAGCGTGGGGTCGGGCATTTCCTGTGCATTGGCGTCAGTGCCGAGAATGCGGGT > 7:157131/1‑149 ATCCCATGCTCGTAGATTCCCATTGCCACCTCGACCGTCTTGA‑CCTCACTGCTCACCAGGGCTCCCTCGACGCTGCCCTGCAGGCGGCGCGTGAGCGTGGGGTCGGGCATTTCCTGTGCATTGGCGTCAGTGCCGAGAATGCGGGGGCA > 3:40591/1‑149 CCCATGCTCGTAGATTCCCATTGCCACCTCGACCGTCTTGA‑CCTCACTGCTCACCAGGGCTCCCTCGACGCTGCCCTGCAGGCGGCGCGTGAGCGTGGGGTCGGGCATTTCCTGTGCATTGGCGTCAGTGCCGAGAATGCGGGT < 8:341968/144‑1 CCCATGCTCGTAGATTCCCATTGCCACCTCGACCGTCTTGA‑CCTCACTGCTCACCAGGGCTCCCTCGACGCTGCCCTGCAGGCGGCGCGTGAGCGTGGGGTCGGGCATTTCCTGTGCATTGGCGTCAGTGCCGAGAATGCGGGT > 7:341968/1‑144 TCACTGCTCACCAGGGCTCCCTCGACGCTGCCCTGCAGGCGGCGCGTGAGCGTGGGGTCGGGCATTTCCTGTGCATTGGCGTCAGTGCCGAGAATGCGGGTGCACGCCCACCGAGCAGTCGACGTCAGCGTACTGCTCGCTCAGCGCCT > 1:107289/1‑149 ACCAGGGCTCCCTCGACGCTGCCCTGCAGGCGGCGCGTGAGCGTGGGGTCGGGCATTTCCTGTGCATTGGCGTCAGTGCCGAGAATGCGG < 7:169369/90‑1 ACCAGGGCTCCCTCGACGCTGCCCTGCAGGCGGCGCGTGAGCGTGGGGTCGGGCATTTCCTGTGCATTGGCGTCAGTGCCGAGAATGCGG > 8:169369/1‑90 CCTCGACGCTGCCCTGCAGGCGGCGCGTGAGCGTGGGGTCGGGCATTTCCTGTGCATTGGCGTCAGTGCCGAGAATGCGGGTGCACGCCCACCGAGCAGTCGACGTCAGCGTACTGCTCGCTCAGCGCCTTCACTGCACCCGCATTCTC < 2:107289/149‑1 TGAGCGTGGGGTCGGGCATTTCCTGTGCATTGGCGTCAGTGCCGAGAATGCGGGTGCACGCCCACCGAGCAGTCGACGTCAGCGTACTGCTCGCTCAGCGCCTTCACTGCACCC > 7:196480/1‑114 TGAGCGTGGGGTCGGGCATTTCCTGTGCATTGGCGTCAGTGCCGAGAATGCGGGTGCACGCCCACCGAGCAGTCGACGTCAGCGTACTGCTCGCTCAGCGCCTTCACTGCACCC < 8:196480/114‑1 GCGGGTGCACGCCCACCGAGCAGTCGACGTCAGCGTACTGCTCGCTCAGCGCCTTCACTGCACCCGCATTCTCGGCACTGACGCCAATGCACAGGAAATGCCCGACCCCACGCTCACGCGCCGCCTGCAGGTCAGCGTCGAGGGAGCCC < 1:245258/149‑1 GCGGGTGCACGCCCACCGAGCAGTCGACGTCAGCGTACTGCTCGCTCAGCGCCTTCACTGCACCCGCATTCTCGGCACTGACGCCAATGCACAGGAAATGCCCGACCCCACGCTCACGCGCCGCCTGCAGGGCAGCGTCGAGGGAGCCC < 7:88326/149‑1 GTGCACGCCCACCGAGCAGTCGACGTCAGCGTACTGCTCGCTCAGCGCCTTCACTGCACCCGCATTCTCGGCACTGACGCCAATGCACAGGAAATGCCCGACCCCACGCTCACGCGCCGCCTGCAGGGCAGCGTCGAGGGAGCCCTGGT < 2:206447/149‑1 ACGCCCACCGAGCAGTCGACGTCAGCGTACTGCTCGCTCAGCGCCTTCACTGCACCCGCATTCTCGGCACTGACGCCAATGCACAGGAAATGCCCGACCCCACGCTCACGCGCCGCCTGCAGGGCAGCGTCGAGGGAGCCCTGGTGAG > 3:23959/1‑148 ACGCCCACCGAGCAGTCGACGTCAGCGTACTGCTCGCTCAGCGCCTTCACTGCACCCGCATTCTCGGCACTGACGCCAATGCACAGGAAATGCCCGACCCCACGCTCACGCGCCGCCTGCAGGGCAGCGTCGAGGGAGCACTGGTGAG > 8:157131/1‑148 CCGTTATCCCATGCTCGTAGATTCCCATTGCCACCTCGACCGTCTTGA‑CCTCACTGCTCACCAGGGCTCCCTCGACGCTGCCCTGCAGGCGGCGCGTGAGCGTGGGGTCGGGCATTTCCTGTGCATTGGCGTCAGTGCCGAGAATGCGGGTGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/2228855‑2229008‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgggtgcaCGCCCACCGAGCAGTCGACGTCAGCGTACTGCTCGCTCAGCGCCTTCACTGCACCCGCATTCTCGGCACTGACGCCAATGCACAGGAAATGCCCGACCCCACGCTCACGCGCCGCCTGCAGGGCAGCGTCGAGGGAGCCCTGGTGAG < NC_002947/2229057‑2228911 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |