New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2229008	49 (0.830)	4 (0.070)	4/244	NT	8.5%	coding (144/783 nt)	ycfH	tRNA D‑aminoacylase
	?	NC_002947	= 2229057	40 (0.730)					coding (193/783 nt)	ycfH	tRNA D‑aminoacylase

CTCACCAGGGCTCCCTCGACGCTGCCCTGCAGGCGGCGCGTGAGCGTGGGGTCGGGCATTTCCTGTGCATTGGCGTCAGTGCCGAGAATGCGGGTGCAGTGAAGGCGCTGAGCGAGCAGTACGCTGACGTCGACTGCTCGGTGGGCGTGCACCCGCTGGACCTGGCCCCTGGCGAAACCCCGGCGTTGGAATGGTTGTTGCGCGAACTGGCCCACCCGCATGTGGTGGCGATTGGTGAAACCGGGCTGGATTACCACTACGAGCCGGAGGCTGCCGAGCTGCAGCAGGCCTCGT  >  NC_002947/2228911‑2229204                                                                                                                                                   |                                                                                                                                                    cTCACCAGTGCTCCCTCGACGCTGCCCTGCAGGCGGCGCGTGAGCGTGGGGTCGGGCATTTCCTGTGCATTGGCGTCAGTGCCGAGAATGCGGGTGCAGTGAAGGCGCTGAGCGAGCAGTACGCTGACGTCGACTGCTCGGTGGGCGt                                                                                                                                                    >  8:157131‑M2/1‑147 (MQ=255) cTCACCAGGGCTCCCTCGACGCTGCCCTGCAGGCGGCGCGTGAGCGTGGGGTCGGGCATTTCCTGTGCATTGGCGTCAGTGCCGAGAATGCGGGTGCAGTGAAGGCGCTGAGCGAGCAGTACGCTGACGTCGACTGCTCGGTGGGCGt                                                                                                                                                    >  3:23959‑M2/1‑147 (MQ=255)    aCCAGGGCTCCCTCGACGCTGCCCTGCAGGCGGCGCGTGAGCGTGGGGTCGGGCATTTCCTGTGCATTGGCGTCAGTGCCGAGAATGCGGGTGCAGTGAAGGCGCTGAGCGAGCAGTACGCTGACGTCGACTGCTCGGTGGGCGtgcac                                                                                                                                                <  2:206447‑M2/149‑6 (MQ=255)        gggCTCCCTCGACGCTGCCCTGCAGGCGGCGCGTGAGCGTGGGGTCGGGCATTTCCTGTGCATTGGCGTCAGTGCCGAGAATGCGGGTGCAGTGAAGGCGCTGAGCGAGCAGTACGCTGACGTCGACTGCTCGGTGGGCGtgcacccgc                                                                                                                                            <  7:88326‑M2/149‑10 (MQ=255)        gggCTCCCTCGACGCTGACCTGCAGGCGGCGCGTGAGCGTGGGGTCGGGCATTTCCTGTGCATTGGCGTCAGTGCCGAGAATGCGGGTGCAGTGAAGGCGCTGAGCGAGCAGTACGCTGACGTCGACTGCTCGGTGGGCGtgcacccgc                                                                                                                                            <  1:245258‑M2/149‑10 (MQ=255)           cTCCCTCGACGCTGCCCTGCAGGCGGCGCGTGAGCGTGGGGTCGGGCATTTCCTGTGCATTGGCGTCAGTGCCGAGAATGCGGGTGCAGTGAAGGCGCTGAGCGAGCAGTACGCTGACGTCGACTGCTCGGTGGGCGTGCACCCGCTg                                                                                                                                          >  2:171733/1‑148 (MQ=255)              ccTCGACGCTGCCCTGCAGGCGGCGCGTGAGCGTGGGGTCGGGCATTTCCTGTGCATTGGCGTCAGTGCCGAGAATGCGGGTGCAGTGAAGGCGCTGAGCGAGCAGTACGCTGACGTCGACTGCTCGGTGGGCGTGCACCCGCTGGAcc                                                                                                                                      >  7:194049/1‑149 (MQ=255)              ccTCGACGCTGCCCTGCAGGCGGCGCGTGAGCGTGGGGTCGGGCATTTCCTGTGCATTGGCGTCAGTGCCGAGAATGCGGGTGCAGTGAAGGCGCTGAGCGAGCAGTACGCTGACGTCGACTGCTCGGTGGGCGTGCACCCGCTGGAc                                                                                                                                       <  3:211485/148‑1 (MQ=255)                  gACGCTGCCCTGCAGGCGGCGCGTGAGCGTGGGGTCGGGCATTTCCTGTGCATTGGCGTCAGTGCCGAGAATGCGGGTGCAGTGAAGGCGCTGAGCGAGCAGTACGCTGACGTCGACTGCTCGGTGGGCGTGCACCCGCTGGACCTGGc                                                                                                                                  <  2:271517/149‑1 (MQ=255)                   aCGCTGCCCTGCAGGCGGCGCGTGAGCGTGGGGTCGCGCATTTCCTGTGCATTGGCGTCAGTGCCGAGAATGCGGGTGCAGTGAAGGCGCTGAGCGAGCAGTACGCTGACGTCGACTGCTCGGTGGGCGTGCACCCGCTGGACCTGGcc                                                                                                                                 >  4:282000/1‑149 (MQ=255)                          ccTGCAGGCGGCGCGTGAGCGTGGGGTCGGGCATTTCCTGTGCATTGGCGTCAGTGCCGAGAATGCGGGTGCAGTGAAGGCGCTGAGCGAGCAGTACGCTGACGTCGACTGCTCGGTGGGCGTGCACCCGCTGGACCTGGCCCCTGGCg                                                                                                                          <  5:353932/149‑1 (MQ=255)                                       cgTGAGCGTGGGGTCGGGCATTTCCTGTGCATTGGCGTCAGTGCCGAGAATGCGGGTGCAGTGAAGGCGCTGAGCGAGCAGTACGCTGACGTCGACTGTTCGGTGGGCGTGCACCCGCTGGACCTGGCCCCTGGCGAAACCCCGGCGtt                                                                                                             <  1:275944/149‑1 (MQ=255)                                        gTGAGCGTGGGGTCGGGCATTTCCTGTGCATTGGCGTCAGTGCCGAGAATGCGGGTGCAGTGAAGGCGCTGAGCGAGCAGTACGCTGACGTCGACTGCTCGGTGGGCGTGCACCCGCTGGACCTGGTCCCTGGCGAAACCCCGGCGTTg                                                                                                            <  4:202182/149‑1 (MQ=255)                                         tGAGCGTGGGGTCGGGCATTTCCTGTGCATTGGCGTCAGTGCCGAGAATGCGGGTGCAGTGAAGGCGCTGAGCGAGCAGTACGCTGACGTCGACTGCTCGGTGGGCGTGCACCCGCTGGACCTGGCCCCTGGCGAAACCCCGGCGTTg                                                                                                            >  6:151894/1‑148 (MQ=255)                                              gTGGGGTCGGGCATTTCCTGTGCATTGGCGTCAGTGCCGAGAATGCGGGTGCAGTGAAGGCGCTGAGCGAGCAGTACGCTGACGTCGACTGCTCGGTGGGCGTGCACCCGCTGGACCTGGCCCCTGGCGAAACCCCGGCGTTGGAATgg                                                                                                      <  5:151894/149‑1 (MQ=255)                                                        gCATTTCCTGTGCATTGGCGTCAGTGCCGAGAATGCGGGTGCAGTGAAGGCGCTGAGCGAGCAGTACGCTGACGTCGACTGCTCGGTGGGCGTGCACCCGCTGGACCTGGCCCCTGGCGAAACCCCGGCGTTGGAATGGTTGTTgcgc                                                                                             >  4:343066/1‑148 (MQ=255)                                                                    cATTGGCGTCAGTGCCGAGAATGCGGGTGCAGTGAAGGCGCTGAGCGAGCAGTACGCTGACGTCGACTGCTCGGTGGGCGTGCACCCGCTGGACCTGGCCCCTGGCGAAACCCCGGCGTTGGAATg                                                                                                       >  6:80507/1‑126 (MQ=255)                                                                    cATTGGCGTCAGTGCCGAGAATGCGGGTGCAGTGAAGGCGCTGAGCGAGCAGTACGCTGACGTCGACTGCTCGGTGGGCGTGCACCCGCTGGACCTGGCCCCTGGCGAAACCCCGGCGTTGGAATg                                                                                                       <  5:80507/126‑1 (MQ=255)                                                                     aTTGGCGTCAGTGCCGAGAATGCGGGTGCAGTGAAGGCGCTGAGCGAGCAGTACGCTGACGTCGACTGCTCGGTGGGCGTGCACCCGCTGGACCTGGCCCCTGGCGAAACCCCGGCGTTGGAATGGTTGTTGCGCGAACTGGCCCAccc                                                                               <  3:282000/149‑1 (MQ=255)                                                                     aTTGGCGTCAGTGCCGAGAATGCGGGTGCAGTGAAGGCGCTGAGCGAGCAGTACGCTGACGTCGACTGCTCGGTGGGCGTGCACCCGCTGGACCTGGCCCCTGGCGAAACCCCGGCGTTGGAATGGTTGTTGCGCGAACTGGCCCAccc                                                                               <  4:224431/149‑1 (MQ=255)                                                                        ggCGTCAGTGCCGAGAATGCGGGTGCAGTGAAGGCGCTGAGCGAGCAGTACGCTGACGTCGACTGCTCGGTGGGCGTGCACCCGCTGGACCTGGCCCCTGGCGAAACCCCGGCGTTGGAATGGTTGTTGCGCGAACTGGCCCACCCGc                                                                             <  5:366166/148‑1 (MQ=255)                                                                           gTCAGTGCCGAGAATGCGGGTGCAGTGAAGGCGCTGAGCGAGCAGTACGCTGACGTCGACTGCTCGGTGGGCGTGCACCCGCTGGACCTGGCCCCTGGCGAAACCCCGGCGTTGGAATGGTTGTTGCGCGAACTGGCCCACCCGCAtgt                                                                         >  6:64381/1‑149 (MQ=255)                                                                            tCAGTGCCGAGAATGCGGGTGCAGTGAAGGCGCTGAGCGAGCAGTACGCTGACGTCGACTGCTCGGTGGGCGTGCACCCGCTGGACCTGGCCCCTGGCGAAACCCCGGCGTTGGAATGGTTGTTGCGCGAACTGGCCCACCCGCAtgtg                                                                        <  2:219952/149‑1 (MQ=255)                                                                                    gagaATGCGGGTGCAGTGAAGGCGCTGAGCGAGCAGTACGCTGACGTCGACTGCTCGGTGGGCGtgcacccgcattctcggcactgacgccaatgcacaggaaatgcccgaccccacgctcacgcgccgcctgcagggcagcgtcgagg                                                                <  2:107289‑M2/149‑86 (MQ=255)                                                                                    gagaATGCGGGTGCAGTGAAGGCGCTGAGCGAGCAGTACGCTGACGTCGACTGCTCGGTGGGCGTGCACCCGCTGGACCTGGCCCCTGGCGAAACCCCGGCGTTGGAATGGTTGTTGCGCGAACTGGCCCACCCGCATGTGGTGGCGAt                                                                <  2:110823/149‑1 (MQ=255)                                                                                         tGCGGGTGCAGTGAAGGCGCTGAGCGAGCAGTACGCTGACGTCGACTGCTCGGTGGGCGTGCACCCGCTGGACCTGGCCCCTGGCGAAACCCCGGCGTTGGAATGGTTGTTGCGCGAACTGGCCCACCCGCATGTGGTGGCGATTGGt                                                            >  3:13136/1‑148 (MQ=255)                                                                                           cGGGTGCAGTGAAGGCGCTGAGCGAGCAGTACGCTGACGTCGACTGCTCGGTGGGCGTGCACCCGCTGGACCTGGCCCCTGGCGAAACCCCGGCGTTGGAATGGTTGTTGCGCGAACTGGCCCACCCGCATGTGGTGGCGATTGGTGa                                                          <  4:294206/148‑1 (MQ=255)                                                                                            gggTGCAGTGAAGGCGCTGAGCGAGCAGTACGCTGACGTCGACTGCTCGGTGGGCGtgcacccgcattctcggcactgacgccaatgcacaggaaatgcccgaccccacgctca                                                                                           >  7:196480‑M2/1‑56 (MQ=255)                                                                                            gggTGCAGTGAAGGCGCTGAGCGAGCAGTACGCTGACGTCGACTGCTCGGTGGGCGtgcacccgcattctcggcactgacgccaatgcacaggaaatgcccgaccccacgctca                                                                                           <  8:196480‑M2/114‑59 (MQ=255)                                                                                              gTGCAGTGAAGGCGCTGAGCGAGCAGTACGCTGACGTCGACTGCTCGGTGGGCGTGCACCCGCTGGACCTGGCCCCTGGCGAAACCCCGGCGTTGGAATGGTTGTTGCGCGAACTGGCCCACCCGCATGTGGTGGCGATTGGTGAAAcc                                                      <  8:88326/149‑1 (MQ=255)                                                                                                  aGTGAAGGCGCTGAGCGAGCAGTACGCTGACGTCGACTGCTCGGTGGGCGTGCACCCGCTGGACCTGGCCCCTGGCGAAACCCCGGCGTTGGAATGGTTGTTGCGCGAACTGGCCCACCCGCATGTGGTGGCGATTGGTGAAACCGGGc                                                  >  4:332947/1‑149 (MQ=255)                                                                                                    tGAAGGCGCTGAGCGAGCAGTACGCTGACGTCGACTGCTCGGTGGGCGTGCACCCGCTGGACCTGGCCCCTGGCGAAACCCCGGCGTTGGAATGGTTGTTGCGCGAACTGGCCCACCCGCATGTGGTGGCGATTGGTGAAACCGGGCTg                                                >  8:229770/1‑149 (MQ=255)                                                                                                       aGGCGCTGAGCGAGCAGTACGCTGACGTCGACTGCTCGGTGGGCGtgcacccgcattctcggcactgacgccaatgcacaggaaatgcccgaccccacgctcacgcgccgcctgcagggcagcgtcgagggagccctggtgagcagtga                                             >  1:107289‑M2/1‑45 (MQ=255)                                                                                                         gcgcTGAGCGAGCAGTACGCTGACGTCGACTGCTCGGTGGGCGTGCACCCGCTGGACCTGGCCCCTGGCGAAACCCCGGCGTTGGAATGGTTGTTGCGCGAACTGGCCCACCCGCATGTGGTGGCGATTGGTGAAACCGGGCTGGATTa                                           <  2:245258/149‑1 (MQ=255)                                                                                                               agcgagcAGTACGCTGACGTCGACTGCTCGGTGGGCGTGCACCCGCTGGACCTGGCCCCTGGCGAAACCCCGGCGTTGGAATGGTTGTTGCGCGAGCTGGCCCACCCGCAGGGGGTGGCGATTGGTGACACCGGGCTGGATGACCACTa                                     >  8:18648/1‑149 (MQ=255)                                                                                                               agcgagcAGTACGCTGACGTCGACTGCTCGGTGGGCGTGCACCCGCTGGACCTGGCCCCTGGCGAAACCCCGGCGTTGGAATGGTTGTTGCGCGAACTGGCCCACCCGCATGTGGTGGCGATTGGTGAAACCGGGCTGGATTACCACt                                      <  5:64381/148‑1 (MQ=255)                                                                                                                         gatcTGACGTCGACTGCTCGGTGGGAGTGCACGCGCTGGACCTGGCCCCTGGCGAAACCGCGGCGTTGGAATGGTTGTTGCGCGAACTGGCCCACCCGCATGTGGTGGCGATTGGTGAAACCGGGCTGGATTACCACTACGAGCCGGAg                           <  3:25343/146‑1 (MQ=255)                                                                                                                          cGCTGACGTCGACTGCTCGGTGGGCGTGCACCCGCTGGACCTGGCCCCTGGCGAAACCCCGGCGTTGGAATGGTTGTTGCGCGAACTGGCCCACCCGCATGTGGTGGCGATTGGTGAAACCGGGCTGGATTACCACTACGAGCCGGAg                           <  8:194049/148‑1 (MQ=255)                                                                                                                          cGCTGACGTCGACTGCTCGGTGGGCGTGCACCCGCTGGACCTGGCCCCTGGCGAAACCCCGGCGTTGGAATGGTTGTTGCGCGAACTGGCCCACCCGCATGTGGTGGCGATTGGTGAAACCGGGCTGGATTACCACTACGAGCCGGAg                           <  1:171733/148‑1 (MQ=255)                                                                                                                             tGACGTCGACTGCTCGGTGGGCGTGCACCCGCTGGACCTGGCCCCTGGCGAAACCCCGGCGTTGGAATGGTTGTTGCGCGAACTGGCCCACCCGCATGTGGTGGCGATTGGTGAAACCGGGCTGGATTACCACTACGAGCCGGAGGCTg                       >  2:255238/1‑149 (MQ=255)                                                                                                                               aCGTCGACTGCTCGGTGGGCGTGCACCCGCTGGACCTGGCCCCTGGCGAACCCCCGGCGTTGGAATGGTTGTTGCGCGAACTGGCCCACCCGCATGTGGTGGCGATTGGTGAAACCGGGCTGCATTACAACTACGAGCaggaggagaat                     >  4:25343/1‑144 (MQ=255)                                                                                                                               aCGTCGACTGCTCGGTGGGCGTACACCCGCTTGACCTGGCCCCTGGCGAAACCCCGGCGTTGGAATGGTTGTTGCGCGAACTGGCCCACCCGCATGTGGTGGCGATTGGTGAAACCGGGCTGGATTACCACTACGAGCCGGAGGCTGc                      <  7:347049/148‑1 (MQ=255)                                                                                                                                  tCGACTGCTCGGTGGGCGTGCACCCGCTGGACCTGGCCCCTGGCGAAACCCCGGCGTTGGAATGGTTGTTGCGCGAACTGGCCCACCCGCATGTGGTGGCGATTGGTGAAACCGGGCTGGATTACCACTACGAGCCGGAGGCTGCCGAg                  >  8:54895/1‑149 (MQ=255)                                                                                                                                  tCGACTGCTCGGTGGGCGTGCACCCGCTGGACCTGGCCCCTGGCGAAACCCCGGCGTTGGAATGGTTGTTGCGCGAACTGGCCCACCCGCATGTGGTGGCGATTGGTGAAACCGGGCTGGATTACCACTACGAGCCGGAGGCTGCCGAg                  >  2:311217/1‑149 (MQ=255)                                                                                                                                         cTCGGTGGGCGTGCACCCGCTGGACCTGGCCCCTGGCGAAACCCCGGCTGTGGAATGGTTGTTGCGCGAACTGGCCCACCCGCATGTGGTGGCGATTGGTGAAACCGGGCTGGATTACCACTACGAGCCGGAgg                          <  2:273110/134‑1 (MQ=255)                                                                                                                                         cTCGGTGGGCGAGCACCCGCTGGACCTGGCCCCTGGCGAAACCCCGGCGTTGGAATGGTTGTTGCGCGAACTGGCCCACCCGCATGTGGTGGCGATTGGTGAAACCGGGCTGGATTACCACTACGAGCCGGAGGCTGCCGAGCTgca             <  1:311217/147‑1 (MQ=255)                                                                                                                                          tCGGTGGGCGTGCACCCGCTGGAACTGGCCCCTGGCGAAAACCCGGCGTTGGAATGGTTGTTGCGCGAACTGGCCCACCCGCATGTGGTGGCGATTGGTGAAACCGGGCTGGATTACCACTACGAGCCGGAGGCTGCCGAGCTgcag            >  7:89022/1‑147 (MQ=255)                                                                                                                                           cGGTGGGCGTGCACCCGCTGGACCTGGCCCCTGGCGAAACCCCGGCGTTGGAATGGTTGTTGCGCGAACTGGCCCACCCGCATGTGGTGGCGATTGGTGAAACCGGGCTGGATTACCACTACGAGCCGGAGGCTGCCGAGCTGcagcag         <  4:13136/149‑1 (MQ=255)                                                                                                                                             gTGGGCGTGCACCCGCTGGACCTGGCCCCTGGCGAAACCCCGGCGTTGGAATGGTTGTTGCGCGAACTGGCCCACCCGCATGTGGTGGCGATTGGTGa                                                          <  3:83401/98‑1 (MQ=255)                                                                                                                                             gTGGGCGTGCACCCGCTGGACCTGGCCCCTGGCGAAACCCCGGCGTTGGAATGGTTGTTGCGCGAACTGGCCCACCCGCATGTGGTGGCGATTGGTGa                                                          >  4:83401/1‑98 (MQ=255)                                                                                                                                             gTGGGCGTGCACCCGCTGGACCTGGCCCCTGGCGAAACCCCGGCGTTGGAATGGTTGTTGCGCGAACTGGCCCACCCGCATGTGGTGGCGATTGGTGAAACCGGGCTGGATTACCACTACGAGCCGGAGGCTGCCGAGCTGCAGCAGGc       <  8:80249/149‑1 (MQ=255)                                                                                                                                                  cGTGCACCCGCTGGACCTGGCCCCTGGCGAAACCCCGGCGTTGGAATGGTTGTTGCGCGAACTGGCCCACCCGCATTTGGTGGCGATTGGTGAAACCGGGCTGGATTACCACTACGAGCCGGAGGCCGCCGAGCTGCAGCAGGCCTCGt  <  7:54895/149‑1 (MQ=255)                                                                                                                                                   |                                                                                                                                                    CTCACCAGGGCTCCCTCGACGCTGCCCTGCAGGCGGCGCGTGAGCGTGGGGTCGGGCATTTCCTGTGCATTGGCGTCAGTGCCGAGAATGCGGGTGCAGTGAAGGCGCTGAGCGAGCAGTACGCTGACGTCGACTGCTCGGTGGGCGTGCACCCGCTGGACCTGGCCCCTGGCGAAACCCCGGCGTTGGAATGGTTGTTGCGCGAACTGGCCCACCCGCATGTGGTGGCGATTGGTGAAACCGGGCTGGATTACCACTACGAGCCGGAGGCTGCCGAGCTGCAGCAGGCCTCGT  >  NC_002947/2228911‑2229204

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.