New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2252527	36 (0.610)	3 (0.050)	3/244	NT	8.1%	coding (428/645 nt)	leuD	3‑isopropylmalate dehydratase small subunit
	?	NC_002947	= 2252553	35 (0.640)					coding (454/645 nt)	leuD	3‑isopropylmalate dehydratase small subunit

CCGTGAGCATGCCCCCTGGGCGCTGGACGAGTACGGCTTCCGCAGCATCATTGCGCCGAGCTTTGCCGACATTTTCTTCAACAACAGCTTCAAGAACGGCTTGCTGCCGATCATTCTCAGCGATGAGGAAGTCGACGAGCTGTTCAAGCAGGTCGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/2252372‑2252527 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcaggtcgaTGGTCAGCTGGTAGCCCGGGTTGGCTTCGACCTGCTTGAACAGCTCGTCGACTTCCTCATCGCTGAGAATGATCGGCAGCAAGCCGTTCTTGAAGCTGTTGTTGAAGAAAATGTCGGCAAAGCTCGGCGCAATGATGCTGCGGAAGCC  <  NC_002947/2252553‑2252406                                                                                                                                                                                                                                                                                                                  CCGTGAGCATGCCCCCTGGGCGCTGGACGAGTACGGCTTCCGCAGCATCATTGCGCCGAGCTTTGCCGACATTTTCTTCAACAACAGCTTCAAGAACGGCTTGCTGCCGATCATTCTCAGCGATGAGGAAGTCGACGAGCTGTTCAAGC                                                                                                                                                             <  8:264485/149‑1      AGCATGCCCCCTGGGCGCTGGACGAGTACGGCTTCCGCAGCATCATTGCGCCGAGCTTTGCCGACATTTTCTTCAACAACAGCTTCAAGAACGGCTTGCTGCCGATCATTCTCAGCGATGAGGAAGTCGACGAGCTGTTCAAGCAGGTC                                                                                                                                                        <  8:60580/149‑1                                             GCATCATTGCGCCGAGCTTTGCCGACATTTTCTTCAACAACAGCTTCAAGAACGGCTTGCTGCCGATCATTCTCAGCGATGAGGAAGTCGACGAGCTGTTCAAGCAGGTCGATGGTCAGCTGGTAGCCCGGGTTGGCTTCGACCTGCTT                                                                                                                 <  8:348526/149‑1                                                TCATTGCGCCGAGCTTTGCCGACATTTTCTTCAACAACAGCTTCAAGAACGGCTTGCTGCCGATCATTCTCAGCGATGAGGAAGTCGACGAGCTGTTCAAGCAGGTCGATGGTCAGCTGGTAGCCCGGGTTGGCTTCGACCTGC                                                                                                                   >  2:205981/1‑144                                                TCATTGCGCCGAGCTTTGCCGACATTTTCTTCAACAACAGCTTCAAGAACGGCTTGCTGCCGATCATTCTCAGCGATGAGGAAGTCGACGAGCTGTTCAAGCAGGTCGATGGTCACCTTGTAGCCCGGGTTGGCTTCGACCTGC                                                                                                                   <  1:205981/144‑1                                                                                                                                                     CAGGTCGATGGTCAGCTGGTAGCCCGGGTTGGCTTCGACCTGCTTGAACAGCTCGTCGACTTCCTCATCGCTGAGAATGATCGGTAGCAAGCCGTTCTTGAAGCTGTTGTTGAAGAAAATGTCGGCAAAGCTCGGCGCAATGATGCT           <  1:109066/147‑1                                                                                                                                                        GTCGATGGTCAGCTGGTAGCCCGGGTTGGCTTCGACCTGCTTGAACAGCTCGTCGACTTCCTCATCGCTGAGAATGATCGGCAGCAAGCCGTTCTTGAAGCTGTTGTTGAAGAAAATGTCG                                  <  1:135157/121‑1                                                                                                                                                        GTCGATGGTCAGCTGGTAGCCCGGGTTGGCTTCGACCTGCTTGAACAGCTCGTCGACTTCCTCATCGCTGAGAATGATCGGCAGCAAGCCGTTCTTGAAGCTGTTGTTGAAGAAAATGTCG                                  >  2:135157/1‑121                                                                                                                                                           GATGGTCAGCTGGTAGCCCGGGTTGGCTTCGACCTGCTTGAACAGCTCGTCGACTTCCTCATCGCTGAGAATGATCGGCAGCAAGCCGTTCTTGAAGCTGTTGT                                                >  3:88225/1‑104                                                                                                                                                           GATGGTCAGCTGGTAGCCCGGGTTGGCTTCGACCTGCTTGAACAGCTCGTCGACTTCCTCATCGCTGAGAATGATCGGCAGCAAGCCGTTCTTGAAGCTGTTGT                                                <  4:88225/104‑1                                                                                                                                                            ATGGTCAGCTGGTAGCCCGGGTTGGCTTCGACCTGCTTGAACAGCTCGTCGACTTCCTCATCGCTGAGAATGATCGGCAGCAAGCCGTTCTTGAAGCTGTTGTTGAAGAAAATGTCGGCAAAGCTCGGCGCAATGATGCTGCGGAAGCC  <  5:13598/149‑1                                                                                                                                                            ATGGTCAGCTGGTAGCCCGGGTTGGCTTCGACCTGCTTGAACAGCTCGTCGACTTCCTCATCGCTGAGAATGATCGGCAGCAAGCCGTTCTTGAAGCTGTTGTTGAAGAAAATGTCGGCAAAGCACGGCGCAATGATGCTGCGGAAGCC  >  7:176648/1‑149                                                                                                                                                                                                                                                                                                                  CCGTGAGCATGCCCCCTGGGCGCTGGACGAGTACGGCTTCCGCAGCATCATTGCGCCGAGCTTTGCCGACATTTTCTTCAACAACAGCTTCAAGAACGGCTTGCTGCCGATCATTCTCAGCGATGAGGAAGTCGACGAGCTGTTCAAGCAGGTCGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/2252372‑2252527 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcaggtcgaTGGTCAGCTGGTAGCCCGGGTTGGCTTCGACCTGCTTGAACAGCTCGTCGACTTCCTCATCGCTGAGAATGATCGGCAGCAAGCCGTTCTTGAAGCTGTTGTTGAAGAAAATGTCGGCAAAGCTCGGCGCAATGATGCTGCGGAAGCC  <  NC_002947/2252553‑2252406

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.