New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2252527	36 (0.610)	3 (0.050)	3/244	NT	8.1%	coding (428/645 nt)	leuD	3‑isopropylmalate dehydratase small subunit
	?	NC_002947	= 2252553	35 (0.640)					coding (454/645 nt)	leuD	3‑isopropylmalate dehydratase small subunit

GGCTTCCGCAGCATCATTGCGCCGAGCTTTGCCGACATTTTCTTCAACAACAGCTTCAAGAACGGCTTGCTGCCGATCATTCTCAGCGATGAGGAAGTCGACGAGCTGTTCAAGCAGGTCGAAGCCAACCCGGGCTACCAGCTGACCATCGACCTGCAGGCGCAGGCGGTGACCCGCCCGGATGGCAAGGTGCTGCACTTCGAGATCGATGCGTTCCGCAAGCACTGCCTGCTCAACGGTCTGGACGATATCGGCCTGACCTTGCAGGACAGCGACGCGATCAAGGCCTTCGAAG  >  NC_002947/2252406‑2252700                                                                                                                                                    |                                                                                                                                                    ggCTTCCGCAGCATCATTGCGCCGTGCTTTGCCGACATTTTCTTCAACAACAGCTTCAAGAACGGCTTGCTGCCGATCATTCTCAGCGATGAGGAAGTCGACGAGCTGTTCAAGCAGGTCGAAGCCAACCCGGGCTACCAGCTGACCAt                                                                                                                                                    >  7:176648‑M2/1‑148 (MQ=255) ggCTTCCGCAGCATCATTGCGCCGAGCTTTGCCGACATTTTCTTCAACAACAGCTTCAAGAACGGCTTGCTGCCGATCATTCTCAGCGATGAGGAAGTCGACGAGCTGTTCAAGCAGGTCGAAGCCAACCCGGGCTACCAGCTGACCAt                                                                                                                                                    <  5:13598‑M2/149‑2 (MQ=255)       caaggtcaggccgatatcgtccagaccgttgagcaggcagtgcttgcggaacgcatcgatctcgaagtgcagcaccttgccatccgggcgggtcaccgcctgcgcctGCAGGTCGAAGCCAACCCGGGCTACCAGCTGACCATCGACCt                                                                                                                                              >  5:102304‑M1/108‑149 (MQ=255)          agcaTCATTGCGCCGAGCTTTGCCGACATTTTCTTCAACAACAGCTTCAAGAACGGCTTGCTACCGATCATTCTCAGCGATGAGGAAGTCGACGAGCTGTTCAAGCAGGTCGAAGCCAACCCGGGCTACCAGCTGACCAtcgacctg                                                                                                                                             <  1:109066‑M2/147‑9 (MQ=255)              tcatTGCGCCGAGCTTTGCCGACATTTTCTTCAACAACAGCTTCAAGAACGGCTTGCTGCCGATAATTCTCAGCGATGAGGAAGTCGACGAGCTGTTCAAGCAGGTCGAAGCCAACCCGGGCTAACAGCTGACCATCGACCTgcatgcg                                                                                                                                       >  7:321767/1‑149 (MQ=255)              aggccgatatcgtccagaccgttgagcaggcagtgcttgcggaacgcatcgatctcgaagtgcagcaccttgccatccgggcgggtcaccgcctgcgcctGCAGGTCGAAGCCAACCCGGGCTACCAGCTGACCATCGACCTgcag                                                                                                                                          >  1:57576‑M1/101‑146 (MQ=255)              aggccgatatcgtccagaccgttgagcaggcagtgcttgcggaacgcatcgatctcgaagtgcagcaccttgccatccgggcgggtcaccgcctgcgcctGCAGGTCGAAGCCAACCCGGGCTACCAGCTGACCATCGACCTgcag                                                                                                                                          <  2:57576‑M1/46‑1 (MQ=255)                 ttGCGCCGAGCTTTGCCGACATTTTCTTCAACAACAGCTTCAAGAACGGCTTGCTGCCGATCATTCTCAGCGATGAGGAAGTCGACGAGCTGTTCAAGCAGGTCGAAGCCAACCCGGGCTACCAGCTGACCATCGACCTgcaggcgcag                                                                                                                                    >  5:197286/1‑149 (MQ=255)                 ttGCGCCGAGCTTTGCCGACATTTTCTTCAACAACAGCTTCAAGAACGGCTTGCTGCCGATCATTCTCAGCGATGAGGAAGTCGACGAGCTGTTCAAGCAGGTCGAAGCCAACCCGGGCTACCAGCTGACCATCGACCTgcaggcgcag                                                                                                                                    <  6:12482/149‑1 (MQ=255)                   gcgcCGAGCTTTGCCGACATTTTCTTCAACAACAGCTTCAAGAACGGCTTGCTGCCGATCATTCTCAGCGATGAGGAAGTCGACGAGCTGTTCAAGCAGGTCGAAGCCAACCCGGGCTACCAGCTGACCATCGACCTgcaggcgcaggc                                                                                                                                  >  8:204591/1‑149 (MQ=255)                      ccGAGCTTTGCCGACATTTTCTTCAACAACAGCTTCAAGAACGGCTTGCTGCCGATCATTCTCAGCGATGAGGAAGTCGACGAGCTGTTCAAGCAGGTCGAAGCCAACCCGGGCTACCAGCTGACCATCGACCTGCAGGCGCAGGCGGt                                                                                                                               <  4:120564/149‑1 (MQ=255)                       cGAGCTTTGCCGACATTTTCTTCAACAACAGCTTCAAGAACGGCTTGCTGCCGATCATTCTCAGCGATGAGGAAGTCGACGAGCTGTTCAAGCAGGTCGAAGCCAACCCGGGCTACCAGCTGACCATCGACCTGCAGGCGCAGGCGGt                                                                                                                               >  8:20598/1‑148 (MQ=255)                                ccGACATTTTCTTCAACAACAGCTTCAAGAACGGCTTGCTGCCGATCATTCTCAGCGATGAGGAAGTCGACGAGCTGTTCAAGCAGGTCGAAGCCAACCCGGGCTACCAGCTGACCATCGACCTGCAGGCGCAGGCGGTGAcccgccc                                                                                                                      <  7:204591/148‑1 (MQ=255)                                 cGACATTTTCTTCAACAACAGCTTCAAGAACGGCTTGCTGCCGATCATTCTCAGCGATGAGGAAGTCGACGAGCTGTTCAAGCAGGTCGAAGCCAACCCGGGCTACCAGCTGACCAtcgac                                                                                                                                                <  1:135157‑M2/121‑6 (MQ=255)                                 cGACATTTTCTTCAACAACAGCTTCAAGAACGGCTTGCTGCCGATCATTCTCAGCGATGAGGAAGTCGACGAGCTGTTCAAGCAGGTCGAAGCCAACCCGGGCTACCAGCTGACCAtcgac                                                                                                                                                >  2:135157‑M2/1‑116 (MQ=255)                                  gACATTTTCTTCAACAACAGCTTCAAGAACGGCTTGCTGCCGATCATTCTCAGCGATGAGGAAGTCGACGAGCTGTTCAAGCAGGTCGAAGCCAACCCGGGCTACCAGCTGACCATCGACCTGCAGGCGCAGGCGGTGACCCGCCCGGa                                                                                                                   >  5:84624/1‑149 (MQ=255)                                    cATTTTCTTCAACAACAGCTTCAAGAACGGCTTGCTGCCGATCATTCTCAGCGATGAGGAAGTCGACGAGCTGTTCAAGCAGGTCGAAGCCAACCCGGGCTACCAGCTGACCATCGACCTGCAGGCGCAGGCGGTGACCCGCCCGGATg                                                                                                                 <  1:84503/149‑1 (MQ=255)                                         tcttcAACAACAGCTTCAAGAACGGCTTGCTGCCGATCATTCTCAGCGATGAGGAAGTCGACGAGCTGTTCAAGCAGGTCGAAGCCAACCCGGGCTACCAGCTGACCATCGACCTGCAGGCGCAGGCGGTGACCCGCCCGGATGGCaa                                                                                                             <  7:248736/148‑1 (MQ=255)                                              aacaacAGCTTCAAGAACGGCTTGCTGCCGATCATTCTCAGCGATGAGGAAGTCGACGAGCTGTTCAGGCAGGTCGAAGCCAACCCGGGCTACCAGCTGACCATCGACCTGCAGGCGCAGGCGGTGACCCGCCCGGATGGCAAGGtgc                                                                                                        <  5:111314/148‑1 (MQ=255)                                               acaacaGCTTCAAGAACGGCTTGCTGCCGATCATTCTCAGCGATGAGGAAGTCGACGAGCTGTTCAAGCAGGTCGAAGCCAACCCGGGCTACCAGCTGACCAtc                                                                                                                                                   >  3:88225‑M2/1‑102 (MQ=255)                                               acaacaGCTTCAAGAACGGCTTGCTGCCGATCATTCTCAGCGATGAGGAAGTCGACGAGCTGTTCAAGCAGGTCGAAGCCAACCCGGGCTACCAGCTGACCAtc                                                                                                                                                   <  4:88225‑M2/104‑3 (MQ=255)                                                       ttCAAGAACGGCTTGCTGCCGATCATTCTCAGCGATGAGGAAGTCGACGAGCTGTTCAAGCAGGTCGAAGCCAACCCGGGCTACCAGCTGACCATCGACCTGCAGGCGCAGGCGGTGACCCGCCCGGATGGCAAGGTGCTGCACTTc                                                                                                >  2:58216/1‑147 (MQ=255)                                                            gAACGGCTTGCTGCCGATCATTCTCAGCGATGAGGAAGTCGACGAGCTGTTCAAGCAGGTCGAAGCCAACCCGGGCTACCAGCTGACCATCGACCTGCAGGCGCAGGCGGTGACCCGCCCGGATGGCAAGGTGCTGCACTTCGAGATc                                                                                          >  4:159347/1‑148 (MQ=255)                                                            gAACGGCTTGCTGCCGATCATTCTCAGCGATGAGGAAGTCGACGAGCTGTTCAAGCAGGTCGAAGCCAACCCGGGCTACCAGCTGACCATCGACCTGCAGGCGCAGGCGGTGACCCGCCCGGATGGCAAGGTGCTGCACTTCGAGATCg                                                                                         <  6:197286/149‑1 (MQ=255)                                                              aCGGCTTGCTGCCGATCATTCTCAGCGATGAGGAAGTCGACGAGCTGTTCAAGCAGGTCGAAGCCAACCCGGGCTACCAGCTGACCATCGACCTGCAGGCGCAGGCGGTGACCCGCCCGGATGGCAAGGTGCTGCACTTCGAGATCGAt                                                                                       <  3:159347/149‑1 (MQ=255)                                                                     gctacCGATCATTCTCAGCGATGAGGAAGTCGACGAGCTGTTCAAGCAGGTCGAAGCCAACCCGGGCTACCAGCTGACCATCGACCTGCAGGCGCAGGCGGTGACCCGCCCGGATGGCAAGGTGCTGCACTTCGAGATCGATGCGTTc                                                                                 <  2:109066/148‑1 (MQ=255)                                                                      ctgcCGATCATTCTCAGCGATGAGGAAGTCGACGAGCTGTTCAAGCAGGTCGAAGCCAACCCGGGCTACCAGCTGACCATCGACCTGCAGGCGCAGGCGGTGACCCGCCCGGATGGCAAGGTGCTGCACTTCGAGATCGATGCGTTcc                                                                                <  6:13598/148‑1 (MQ=255)                                                                                   tcAGCGATGAGGAAGTCGACGAGCTGTTCAAGCAGGTCGAAGCCAACCCGGGCTACCAGCTGACCATCGACCTGCAGGCGCAGGCGGTGACCCGCCCGGATGGCAAGGTGCTGCACTTCGAGATCGATGCGTTCCGCAAGCActgcctg                                                                  >  2:29470/1‑149 (MQ=255)                                                                                          tGAGGAAGTCGACGAGCTGTTCAAGCAGGTCGAAGCCAACCCGGGCTACCAGCTGACCATCGACCTGCAGGCGCAGGCGGTGACCCGCCCGGATGGCAAGGTGCTGCACTTCGAGATCGATGCGTTCCGCAAGCACTGCCTGCTCAACg                                                           <  5:369577/149‑1 (MQ=255)                                                                                                agtggtcgaGCTGTTCAAGCAGGTCGAAGCCAACCCGTGCTACCAGCTGACCATCGACCTGCAGGCGCAGGCGGTGACCCGCCCGTATGGCAAGGTGCTGCACTTCGAGATCGATGCGTTCCGCAAGCACTGCCTGCTCAACGGTCTg                                                      <  8:321767/142‑1 (MQ=255)                                                                                                           tGTTCAAGCAGGTCGAAGCCAACCCGGGCTACCAGCTGACCATCGACCTGCAGGCGCAGGCGGTGACCCGCCCGGATGGCAAGGTGCTGCACTTCGAGATCGATGCGTTCCGCAAGCACTGCCTGCTCAACGGTCTGGACGATATCGGc                                          >  3:53469/1‑149 (MQ=255)                                                                                                            gTTCAAGCAGGTCGAAGCCAACCCGGGCTACCAGCTGACCATCGACCTGCAGGCGCAGGCGGTGACCCGCCCGGATGGCAAGGTGATGCACTTCGAGATCGATGCGTTCCGCAAGCACTGCCTGCTCAACGGTCTGGACGATATCGGcc                                         >  3:30690/1‑149 (MQ=255)                                                                                                                aaGCAGGTCGAAGCCAACCCGGGCTACCAGCTGACCAtcgacctgcttgaacagctcgtcgacttcctcatcgctgagaatgatcggcagcaagccgttcttgaagctgttgttgaagaaaatgtcggcaaagctcggcgcaatgatgc                                     <  8:348526‑M2/149‑113 (MQ=255)                                                                                                                aaGCAGGTCGAAGCCAACCCGGGCTACCAGCTGACCATCGACCTGCAGGCGCAGGCGGTGACCCGCCCGGATGGCAAGGTGCTGCACTTCGAGATCGATGCGTTCCGCAAGCACTGCCTGCTCAACGGTCTGGACGATATCGGCCt                                        >  4:302708/1‑146 (MQ=255)                                                                                                                aaGCAGGTCGAAGCCAACCCGGGCTACCAGCTGACCATCGACCTGCAGGCGCAGGCGGTGACCCGCCCGGATGGCAAGGTGCTGCACTTCGAGATCGATGCGTTCCGCAAGCACTGCCTGCTCAACGGTCTGGACGATATCGGCCt                                        <  3:302708/146‑1 (MQ=255)                                                                                                                aaGCAGGTCGAAGCCAACCCGGGCTACCAGCTGACCATCGACCTGCAGGCGCAGGCGGTGACCCGCCCGGATGGCAAGGTGCTGCACTTCGAGATCGATGCGTTCCGCAAGCACTGCCTGCTCAACGGTCTGGACGATATCGGCCTGAc                                     >  2:167066/1‑149 (MQ=255)                                                                                                                  gCAGGTCGAAGCCAACCCGGGCTACCAGCTGACCAtcgacctgcttgaacagctcgtcgacttcctcatcgctgagaatgatcggcagcaagccgttcttgaagctgttgttgaagaaaatgtcggcaaagctcggcgcaatga                                        >  2:205981‑M2/1‑35 (MQ=255)                                                                                                                  gCAGGTCGAAGCCAACCCGGGCTACAAGGTGACCAtcgacctgcttgaacagctcgtcgacttcctcatcgctgagaatgatcggcagcaagccgttcttgaagctgttgttgaagaaaatgtcggcaaagctcggcgcaatga                                        <  1:205981‑M2/144‑110 (MQ=255)                                                                                                                    AGGTCGAAGCCAACCCGGGCTACCAGCTGACCATCGACCTGCAGGCGCAGGCGGTGACCCGCCCGGATGGCAAGGTGCTGCACTTCGAGATCGATGCGTTCCGCAAGCACTGCCTGCTCAACGGTCTGGACGATATCGGCCTGACCTTg                                 >  1:58216‑M1/1‑149 (MQ=255)                                                                                                                      GTCGAAGCCAACCCGGGCTACCAGCTGACCATCGACCTGCAGGCGCAGGCGGTGACCCGCCCGGATGGCAAGGTGCTGCACTTCGAGATCGATGCGTTCCGCAAGCACTGCCTGCTCAACGGTCTGGACGATATCGGCCTGACCTTGCa                               >  8:323454‑M1/1‑149 (MQ=255)                                                                                                                             ccAACCCGGGCTACCAGCTGACCATCGACCTGCAGGCGCAGGCGGTGACCCGCCCGGATGGCAAGGTGCTGCACTTCGAGATCGATGCGTTCCGCAAGCACTGCCTGCTCAACGGTCTGGACGATATCGGCCTGACCTTGCAGGACAGc                        >  2:241740/1‑149 (MQ=255)                                                                                                                               aaCCCGGGCTACCAGCTGACCATCGACCTGCAGGCGCAGGCGGTGATCCGCCCGGATGGCAAGGTGCTGCACTTCGAGATCGATGCGTTCCGCAAGCACTGCCTGCTCAACGGTCTGGACGATATCGGCCTGACCTTGCAGGACAGCGa                      >  5:291396/1‑149 (MQ=255)                                                                                                                                 cccGGGCTACCAGCTGACCATCGACCTGCAGGCGCAGGCGGTGACCCGCCCGGATGGCAAGGTGCTGCACTTCGAGATCGATGCGTTCCGCAAGCACTGCCTGCTCAACGGTCt                                                       >  5:34580/1‑114 (MQ=255)                                                                                                                                 cccGGGCTACCAGCTGACCATCGACCTGCAGGCGCAGGCGGTGACCCGCCCGGATGGCAAGGTGCTGCACTTCGAGATCGATGCGTTCCGCAAGCACTGCCTGCTCAACGGTCt                                                       <  6:34580/114‑1 (MQ=255)                                                                                                                                     ggCTACCAGCTGACCATCGACCTGCAGGCGCAGGCGGTGACCCGCCCGGATGGCAAGGTGCTGCACTTCGAGATCGATGCGTTCCGCAAGCACTGCCTGCTCAACGGTc                                                        >  6:368028/1‑109 (MQ=255)                                                                                                                                     ggCTACCAGCTGACCATCGACCTGCAGGCGCAGGCGGTGACCCGCCCGGATGGCAAGGTGCTGCACTTCGAGATCGATGCGTTCCGCAAGCACTGCCTGCTCAACGGTc                                                        <  3:214771/109‑1 (MQ=255)                                                                                                                                     ggCTACCAGCTGACCATCGACCTGCAGGCGCAGGCGGTGACCCGCCCGGATGGCAAGGTGCTGCACTTCGAGATCGATGCGTTCCGCAAGCACTGCCTGCTCAACGGTc                                                        >  4:214771/1‑109 (MQ=255)                                                                                                                                     ggCTACCAGCTGACCATCGACCTGCAGGCGCAGGCGGTGACCCGCCCGGATGGCAAGGTGCTGCACTTCGAGATCGATGCGTTCCGCAAGCACTGCCTGCTCAACGGTc                                                        <  5:368028/109‑1 (MQ=255)                                                                                                                                            aGCTGACCATCGACCTGCAGGCGCAGGCGGTGACCCGCCCGGATGGCAAGGTGCTGCACTTCGAGATCGATGCGTTCCGCAAGCACTGCCTGCTCAACGGTCTGGACGATATCGGCCTGACCTTGCAGGACAGCGACGCGATCAAGGcc         >  1:258617/1‑149 (MQ=255)                                                                                                                                             gCTGACCATCGACCTGCAGGCGCAGGCGGTGACCCGCCCGGATGGCAAGGTGCTGCACTTCGAGATCGATGCGTTCCGCAAGCACTGCCTGCTCAACGGTCTGGACGATATCGGCCTGACCTTGCAGGACAGCGACGCGATCAAGGCCt        <  2:258617/149‑1 (MQ=255)                                                                                                                                              cTGACCATCGACCTGCAGGCGCAGGCGGTGACCCGCCCGGATGGCAAGGTGCTGCACTTCGAGATCGATGCGTTCCGCAAGCACTGCCTGCTCAACGGTCTGGACGATATCGGCCTGACCTTGCAGGACAGCGACGCGATCAAGGCCtt       <  6:84624/149‑1 (MQ=255)                                                                                                                                                gACCATCGACCTGCAGGCGCAGGCGGTGACCCGCCCGGATGGCAAGGTGCTGCACTTCGAGATCGATGCGTTCCGCAAGCACTGCCTGCTCAACGGTCTGGACGATATCGGCCTGACCTTGCa                               <  7:260597/123‑1 (MQ=255)                                                                                                                                                gACCATCGACCTGCAGGCGCAGGCGGTGACCCGCCCGGATGGCAAGGTGCTGCACTTCGAGATCGATGCGTTCCGCAAGCACTGCCTGCTCAACGGTCTGGACGATATCGGCCTGACCTTGCa                               >  8:260597/1‑123 (MQ=255)                                                                                                                                                 aCCATCGACCTGCAGGCGCAGGCGGTGACCCGCCCGGATGGCAAGGTGCTGCACTTCGAGATCGATGCGTTCCGCAAGCACTGCCTGCTCAACGGTCTGGACGATATCGGCCTGACCTTGCAGGACAGCGACGCGATCAAGGCCTTc      <  4:53469/147‑1 (MQ=255)                                                                                                                                                   cATCGACCTGCAGGCGCAGGCGGTGACCCGCCCGGATGGCAAGGTGCTGCACTTCGAGATCGATGCGTTCCGCAAGCACTGCCTGCTCAACGGTCTGGACGATATCGGCCTGACCTTGCAGGACAGCGACGCGATCAAGGCCTTCGAAg  >  2:170272/1‑149 (MQ=255)                                                                                                                                                    |                                                                                                                                                    GGCTTCCGCAGCATCATTGCGCCGAGCTTTGCCGACATTTTCTTCAACAACAGCTTCAAGAACGGCTTGCTGCCGATCATTCTCAGCGATGAGGAAGTCGACGAGCTGTTCAAGCAGGTCGAAGCCAACCCGGGCTACCAGCTGACCATCGACCTGCAGGCGCAGGCGGTGACCCGCCCGGATGGCAAGGTGCTGCACTTCGAGATCGATGCGTTCCGCAAGCACTGCCTGCTCAACGGTCTGGACGATATCGGCCTGACCTTGCAGGACAGCGACGCGATCAAGGCCTTCGAAG  >  NC_002947/2252406‑2252700

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.