| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 2978174 | 59 (1.000) | 5 (0.090) | 5/248 | NT | 7.8% | coding (181/1326 nt) | PP_2604 | major facilitator family transporter |
| ? | NC_002947 | = 2978192 | 62 (1.110) | coding (163/1326 nt) | PP_2604 | major facilitator family transporter | |||||
CAGGCTCCACAGCAGTACAGCGAAGAAGAAGGCCCGTTTGACTCCGACCTTGTCGATCAGCCGGCCTTGCAGCAAAAAGCCGATGGCATAGCCGACCTGGAACCAGAAATTGATGTTGGCGTAGTCCATCGCCGTCCAGCTCATTTCCTTGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/2978022‑2978174‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccttggcATCATGCAGCCCGTGCTGGCCAAGGAAATGAGCTGGACGGCGATGGACTACGCCAACATCAATTTCTGGTTCCAGGTCGGCTATGCCATCGGCTTTTTGCTGCAAGGCCGGCTGATCGACAAGGTCGGAGTCAAACGGGCCTTCT < NC_002947/2978192‑2978048 CAGGCTCCACAGCAGTACAGCGAAGAAGAAGGCCCGTTTGACTCCGACCTTGTCGATCAGCCGGCCTTGCAGCAAAAAGCCGATGGCATAGCCGACCTGGAACCAGAAATTGATGTTGGCGTAGTCCATCGCCGTCCAGCTCATTTCCT < 2:275156/149‑1 GGCTCCACAGCAGTACAGCGAAGAAGCAGGCCCGTTTGACCCCGACCTTGTCGATCAGCCGGCCTTGCAGCAAAAAGCCGATGGCATAGCCGACCTGGAACCAGAAATTGATGTTGGCGTAGTCCATCGCCGTCCAGCTCATTTCCTTG < 5:377074/149‑1 GGCTCCACAGCAGTACAGCGAAGAAGAAGGCCCGTTTGACTCCGACCTTGTCGATCAGCCGGCCTTGCAGCAAAAAGCCGATGGCATAGCCGACCTGGAACCAGAAATTGATGTTGGCGTAGTCCATCGCCGTCCAGCTCATTTCCTTG < 6:149351/149‑1 AAGGCCCGTTTGACTCCGACCTTGTCGATCAGCCGGCCTTGCAGCAAAAAGCCGATGGCATAGCCGACCTGGAACCAGAAATTGATGTTGGCGTAGTCCATCGCCGTCCAGCTCATTTCCTTGGCATCATGCAGCCCGTGCTGGCCAAG < 7:225526/149‑1 TCCGACCTTGTCGATCAGCCGGCCTTGCAGCAAAAAGCCGATGGCATAGCCGACCTGGAACCAGAAATTGATGTTGGCGTAGTCCATCGCCGTCCAGCTCATTTCCTTGGCATCATGCAGCCCGTGCTGGCCAAGGAAATGA > 7:41324/1‑142 TCCGACCTTGTCGATCAGCCGGCCTTGCAGCAAAAAGCCGATGGCATAGCCGACCTGGAACCAGAAATTGATGTTGGCGTAGTCCATCGCCGTCCAGCTCATTTCCTTGGCATCATGCAGCCCGTGCTGGCCAAGGAAATGA < 8:41324/142‑1 ACCAGAAATTGATGTTGGCGTAGTCCATCGCCGTCCAGCTCATTTCCTTGGCATCATGCAGCCCGTGCTGGCCAAGGAAATGAGC > 3:37987/1‑85 ACCAGAAATTGATGTTGGCGTAGTCCATCGCCGTCCAGCTCATTTCCTTGGCATCATGCAGCCCGTGCTGGCCAAGGAAATGAGC < 4:37987/85‑1 TTGGCATCATGCAGCCCGTGCTGGCCAAGGAAATGAGCTGGACGGCGATGGACTACGCCAACATCAATTTCTGGTTCCAGGTCGGCTATGCCATCGGCTTTTTGCTGCAAGGCCGGCTGAT > 1:287453/1‑121 TTGGCATCATGCAGCCCGTGCTGGCCAAGGAAATGAGCTGGACGGCGATGGACTACGCCAACATCAATTTCTGGTTCCAGGTCGGCTATGCCATCGGCTTTTTGCTGCAAGGCCGGCTGAT < 2:287453/121‑1 TGGCATCATGCAGCCCGTGCTGGCCAAGGAAATGAGCTGGACGGCGATGGACTACGCCAACATCAATTTCTGGTTCCAGGTCGGCTATGCCATCGGCTTTTTGCTGCAAGGCCGGCTGATCGACAAGGTCGGAGTCAAACGGGCCTTCT > 5:207365/1‑149 CAGGCTCCACAGCAGTACAGCGAAGAAGAAGGCCCGTTTGACTCCGACCTTGTCGATCAGCCGGCCTTGCAGCAAAAAGCCGATGGCATAGCCGACCTGGAACCAGAAATTGATGTTGGCGTAGTCCATCGCCGTCCAGCTCATTTCCTTGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/2978022‑2978174‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccttggcATCATGCAGCCCGTGCTGGCCAAGGAAATGAGCTGGACGGCGATGGACTACGCCAACATCAATTTCTGGTTCCAGGTCGGCTATGCCATCGGCTTTTTGCTGCAAGGCCGGCTGATCGACAAGGTCGGAGTCAAACGGGCCTTCT < NC_002947/2978192‑2978048 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |