New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 = 297817459 (1.000)5 (0.090) 5/248 NT 7.8% coding (181/1326 nt) PP_2604 major facilitator family transporter
?NC_002947 = 2978192 62 (1.110)coding (163/1326 nt) PP_2604 major facilitator family transporter

ACAGCAGTACAGCGAAGAAGAAGGCCCGTTTGACTCCGACCTTGTCGATCAGCCGGCCTTGCAGCAAAAAGCCGATGGCATAGCCGACCTGGAACCAGAAATTGATGTTGGCGTAGTCCATCGCCGTCCAGCTCATTTCCTTGGCCAGCACGGGCTGCATGATGCCAAGGGCGGCGCGGTCGATGTAGTTCAGGGTGGTGGCGAAGAACACCAGGGCGAGCATGCCCCAACGGGTCTTGCCGACGCCGAAGGCGCCGCGGAGCTTGTCGCCGATCGAGCCCTGGGACATC  >  NC_002947/2978030‑2978319
                                                                                                                                                |                                                                                                                                                 
acaGCAGTACAGCGAAGAAGAAGGCCCGTTTGACTCCGACCTTGTCGATCAGCCGGCCTTGCAGCAAAAAGCCGATGGCATAGCCGACCTGGAACCAGAAATTGATGTTGGCGTAGTCCATCGCCGTCCAGCTCATTTCCTTGGCCAg                                                                                                                                                >  8:279989/1‑148 (MQ=255)
     agTACAGCGAAGAAGAAGGCCCGTTTGACTCCGACCTTGTCGATCAGCCGGCCTTGCAGCAAAAAGCCGATGGCATAGCCGACCTGGAACCAGAAATTGATGTTGGCGTAGTCCATCGCCGTCCAGCTCATTTCCTTGGCCAGCACggg                                                                                                                                          <  7:279989/149‑1 (MQ=255)
       tACAGCGAAGAAGAAGGCCCGTTTGACTCCGACCTTGTCGATCAGCCGGCCTTGCAGCAAAAAGCCGATGGCATAGCCGACCTGGAACCAGAAATTGATGTTGGCGTAGTCCATCGCCGTCCAGCTCATTTCCTTGGCCAGCACggg                                                                                                                                          <  2:339722/147‑1 (MQ=255)
       tACAGCGAAGAAGAAGGCCCGTTTGACTCCGACCTTGTCGATCAGCCGGCCTTGCAGCAAAAAGCCGATGGCATAGCCGACCTGGAACCAGAAATTGATGTTGGCGTAGTCCATCGCCGTCCAGCTCATTTCCTTGGCCAGCACggg                                                                                                                                          >  1:339722/1‑147 (MQ=255)
             gaagaagaaGGCCCGTTTGACTCCGACCTTGTCGATCAGCCGGCCTTGCAGCAAAAAGCCGATGGCATAGCCGACCTGGAACCAGAAATTGATGTTGGCGTAGTCCATCGCCGTCCAGCTCATTTCCTTGGCCAGCACGGGCTGCatga                                                                                                                                  >  1:314/1‑149 (MQ=255)
             gaagaagaaGGCCCGTTTGACTCCGACCTTGTCGATCAGCCGGCCTTGCAGCAAAAAGCCGATGGCATAGCCGACCTGGAACCAGAAATTGATGTTGGCGTAGTCCATCGCCGTCCAGCTCATTTCCTTGGCCAGCACGGGCTGCatga                                                                                                                                  >  6:63987/1‑149 (MQ=255)
              aagaagaagGCCCGTTTGACTCCGACCTTGTCGATCAGCCGGCCTTGCAGCAAAAAGCCGATGGCATAGCCGACCTGGAACCAGAAATTGATGTTGGCGTAGTCCATCGCCGTCCAGCTCATTTCCTTGGCCAGCACGGGCTGCatgat                                                                                                                                 >  2:256370/1‑149 (MQ=255)
                  agaagGCCCGTTTGACTCCGACCTTGTCGATCAGCCGGCCTTGCAGCAAAAAGCCGATGGCATAGCCGACCTGGAACCAGAAATTGATGTTGGCGTAGTCCATCGCCGTCCAGCTCATTTCCTTGGCCAGCACGGGCTGCATGATgcca                                                                                                                             >  5:207365‑M2/1‑145 (MQ=255)
                    aagGCCCGTTTGACTCCGACCTTGTCGATCAGCCGGCCTTGCAGCAAAAAGCCGATGGCATAGCCGACCTGGAACCAGAAATTGATGTTGGCGTAGTCCATCGCCGTCCAGCTCATTTCCTTGGCatcatgcagcccgtgctggccaag                                                                                                                           <  7:225526‑M1/149‑25 (MQ=255)
                        cccGTTTGACTCCGACCTTGTCGATCAGCCGGCCTTGCAGCAAAAAGCCGATGGCATAGCCGACCTGGAACCAGAAATTGATGTTGGCGTAGTCCATCGCCGTCCAGCTCATTTCCTTGGCCAGCACGGGCTGCATGATGCCAAGggcg                                                                                                                       >  2:215278/1‑149 (MQ=255)
                          cGTTTGACTCCGACCTTGTCGATCAGCCGGCCTTGCAGCAAAAAGCCGATGGCATAGCCGACCTGGAACCAGAAATTGATGTTGGCGTAGTCCATCGCCGTCCAGCTCATTTCCTTGGCCAGCACGGGCTGCATGATGCCAAGggcggc                                                                                                                     <  8:28258/149‑1 (MQ=255)
                           gTTTGACTCCGACCTTGTCGATCAGCCGGCCTTGCAGCAAAAAGCCGATGGCATAGCCGACCTGGAACCAGAAATTGATGTTGGCGTAGTCCATCGCCGTCCAGCTCATTTCCTTGGCCAGCACGGGCTGCATGATGCCAAGGgcggcg                                                                                                                    >  5:198950/1‑149 (MQ=255)
                              tGACTCCGACCTTGTCGATCAGCCGGCCTTGCAGCAAAAAGCCGATGGCATAGCCGACCTGGAACCAGAAATTGATGTTGGCGTAGTCCATCGCCGTCCAGCTCATTTCCTTGGCCAGCACGGGCTGCATGATGCCAAGGGCGGcgcg                                                                                                                  <  8:6591/148‑1 (MQ=255)
                                  tCCGACCTTGTCGATCAGCCGGCCTTGCAGCAAAAAGCCGATGGCATAGCCGACCTGGAACCAGAAATTGATGTTGGCGTAGTCCATCGCCGTCCAGCTCATTTCCTTGGCatcatgcagcccgtgctggccaaggaaatga                                                                                                                    <  8:41324‑M1/142‑32 (MQ=255)
                                  tCCGACCTTGTCGATCAGCCGGCCTTGCAGCAAAAAGCCGATGGCATAGCCGACCTGGAACCAGAAATTGATGTTGGCGTAGTCCATCGCCGTCCAGCTCATTTCCTTGGCatcatgcagcccgtgctggccaaggaaatga                                                                                                                    >  7:41324‑M1/1‑111 (MQ=255)
                                   ccGACCTTGTCGATCAGCCGGCCTTGCAGCAAAAAGCCGATGGCATAGCCGACCTGGAACCAGAAATTGATGTTGGCGTAGTCCATCGCCGTCCAGCTCATTTCCTTGGCCAGCACGGGCTGCATGATGCCAAGGGCGGCGCGGTCGAt                                                                                                            <  7:107713/149‑1 (MQ=255)
                                    cGACCTTGTCGATCAGCCGGCCTTGCAGCAAAAAGCCGATGGCATAGCCGACCTGGAACCAGAAATTGATGTTGGCGTAGTCCATCGCCGTCCAGCTCATTTCCTTGGCCAGCACGGGCTGCATGATGCCAAGGGCGGCGCGGTCGATg                                                                                                           >  5:272299/1‑149 (MQ=255)
                                     gACCTTGTCGATCAGCCGGCCTTGCAGCAAAAAGCCGATGGCATAGCCGACCTGGAACCAGAAATTGATGTTGGCGTAGTCCATCGCCGTCCAGCTCATTTCCTTGGCCAGCACGGGCTGCATGATGCCAAGGGCGGCGCGGTCGATg                                                                                                           >  2:60381/1‑148 (MQ=255)
                                         ttGTCGATCAGCCGGCCTTGCAGCAAAAAGCCGATGGCATAGCCGACCTGGAACCAGAAATTGATGTTGGCGTAGTCCATCGCCGTCCAGCTCATTTCCTTGGCCAGCACGGGCTGCATGATGCCAAGGGCGGCGCGGTCGATGTAGtt                                                                                                      >  4:169703/1‑149 (MQ=255)
                                            tCGATCAGCCGGCCTTGCAGCAAAAAGCCGATGGCATAGCCGACCTGGAACCAGAAATTGATGTTGGCGTAGTCCATCGCCGTCCAGCTCATTTCCTTGGCCAGCACGGGCTGCATGATGCCAAGGGCGGCGCGGTCGATGTAGTTCa                                                                                                    <  6:198950/148‑1 (MQ=255)
                                            tCGATCAGCCGGCCTTGCAGCAAAAAGCCGATGGCATAGCCGACCTGGAACCAGAAATTGATGTTGGCGTAGTCCATCGCCGTCCAGCTCATTTCCTTGGCCAGCACGGGCTGCATGATGCCAAGGGCGGCGCGGTCGATGTAGTTCAg                                                                                                   >  1:77230/1‑149 (MQ=255)
                                               aTCAGCCGGCCTTGCAGCAAAAAGCCGATGGCATAGCCGACCTGGAACCAGAAATTGATGTTGGCGTAGTCCATCGCCGTCCAGCTCATTTCCTTGGCCAGCACGGGCTGCATGATgccaa                                                                                                                            <  2:287453‑M2/121‑6 (MQ=255)
                                               aTCAGCCGGCCTTGCAGCAAAAAGCCGATGGCATAGCCGACCTGGAACCAGAAATTGATGTTGGCGTAGTCCATCGCCGTCCAGCTCATTTCCTTGGCCAGCACGGGCTGCATGATgccaa                                                                                                                            >  1:287453‑M2/1‑116 (MQ=255)
                                               aTCAGCCGGCCTTGCAGCAAAAAGCCGATGGCATAGCCGACCTGGAACCAGAAATTGATGTTGGCGTAGTCCATCGCCGTCCAGCTCATTTCCTTGGCCAGCACGGGCTGCATGATGCCAAGGGCGGCGCGGTCGATGTAGTTCAGggt                                                                                                >  7:257364/1‑149 (MQ=255)
                                               aTCAGCCGGCCTTGCAGCAAAAAGCCGATGGCATAGCCGACCTGGAACCAGAAATTGATGTTGGCGTAGTCCATCGCCGTCCAGCTCATTTCCTTGGCCAGCACGGGCTGCATGATGCCAAGGGCGGCGCGGTCGATGTAGTTCAGggt                                                                                                >  1:311001/1‑149 (MQ=255)
                                                tCAGCCGGCCTTGCAGCAAAAAGCCGATGGCATAGCCGACCTGGAACCAGAAATTGATGTTGGCGTAGTCCATCGCCGTCCAGCTCATTTCCTTGGCCAGCACGGGCTGCATGATGCCAAGGGCGGCGCGGTCGATGTAGTTCAGggtg                                                                                               <  1:60381/149‑1 (MQ=255)
                                                  aGCCGGCCTTGCAGCAAAAAGCCTATGGCATAGCCGACCTGGAAGCAGTAATTGATGTTGGCGTAGTCCATCGCCGTCCAGCTCATTTACTTGGCCAGCACGGGCTGGATGATGCCAAGGGCGGCGCGGTCGATGTAGTTCAGggtggt                                                                                             <  8:122745/149‑1 (MQ=255)
                                                  aGCCGGCCTTGCAGCAAAAAGCCGATGGCATAGCCGACCTGGAACCAGAAATTGATGTTGGCGTAGTCCATCGCCGTCCAGCTCATTTCCTTGGCCAGCACGGGCTGCATGATGCCAAGGGCGGCGCGGTCGATGTAGTTCAGggtggt                                                                                             <  5:63987/149‑1 (MQ=255)
                                                       gCCTTGCAGCAAAAAGCCGATGGCATAGCCGACCTGGAACCAGAAATTGATGTTGGCGTAGTCCATCGCCGTCCAGCTCATTTCCTTGGCCAGCACGGGCTGCATGATGCCAAGGGCGGCGCGGTCGATGTAGTTCAGGGTGGTGGCga                                                                                        <  5:101883/149‑1 (MQ=255)
                                                        ccTTGCAGCAAAAAGCCGATGGCATAGCCGACCTGGAACCAGAAATTGATGTTGGCGTAGTCCATCGCCGTCCAGCTCATTTCCTTGGCCAGCACGGGCTGCATGATGCCAAGGGCGGCGCGGTCGATGTAGTTCAGGGTGGTGGCgaa                                                                                       <  3:169703/149‑1 (MQ=255)
                                                         cTTGCAGCAAAAAGCCGATGGCATAGCCGACCTGGAACCAGAAATTGATGTTGGCGTAGTCCATCGCCGTCCAGCTCATTTCCTTGGCCAGCACGGGCTGCATGATGCCAAGGGCGGCGCGGTCGATGTAGTTCAGGGTGGTGGCg                                                                                         >  3:91507/1‑146 (MQ=255)
                                                          ttGCAGCAAAAAGCCGATGGCATAGCCGACCTGGAACCAGAAATTGATGTTGGCGTAGTCCATCGCCGTCCAGCTCATTTCCTTGGCCAGCACGGGCTGCATGATGCCAAGGGCGGCGCGGTCGATGTAGTTCAGGGTGGTGGCgaag                                                                                      >  4:308824/1‑148 (MQ=255)
                                                             cagcaAAAAGCCGATGGCATAGCCGACCTGGAACCAGAAATTGATGTTGGCGTAGTCCATCGCCGTCCAGCTCATTTCCTTGGCCAGCACGGGCTGCATGATGCCAAGGGCGGCGCGGTCGATGTAGTTCATGGTGGTGGCGAAGAac                                                                                   <  2:77230/148‑1 (MQ=255)
                                                                caAAAAGCCGATGGCATAGCCGACCTGGAACCAGAAATTGATGTTGGCGTAGTCCATCGCCGTCCAGCTCATTTCCTTGGCCAGCACGGGCTGCATGATGCCAAGGGCGGCGCGGTCGATGTAGTTCAGGGTGGTGGCGAAGAacac                                                                                 >  7:66311/1‑147 (MQ=255)
                                                                caAAAAGCCGATGGCATAGCCGACCTGGAACCAGAAATTGATGTTGGCGTAGTCCATCGCCGTCCAGCTCATTTCCTTGGCCAGCACGGGCTGCATGATGCCAAGGGCGGCGCGGTCGATGTAGTTCAGGGTGGTGGCGAAGAacac                                                                                 >  1:74520/1‑147 (MQ=255)
                                                                   aaaGCCGATGGCATAGCCGACCTGGAACCAGAAATTGATGTTGGCGTAGTCCATCGCCGTCCAGCTCATTTCCTTGGCCAGCACGGGCTGCATGATGCAAAGGGCGGCGCGGTCGATGTAGTTCAGGGTGGTGGCGAAGAACACCAggt                                                                            >  3:241227/1‑148 (MQ=255)
                                                                      gCCGATGGCATAGCCGACCTGGAACCAGAAATTGATGTTGGAGTAGTCCATCGCCGTCCAGCTCATTTCCTTGGCCAGCACGGGCTGCATGATGCCAAGGGCGGCGCGGTCGATGTAGTTCAGGGTGGTGGCGAAGAACACCAGGGCGa                                                                         <  5:219283/149‑1 (MQ=255)
                                                                         gATGGCATAGCCGACCTGGAACCAGAAATTGATGTTGGCGTAGTCCATCGCCGTCCAGCTCATTTCCTTGGCCAGCACGGGCTGCATGATGCCAAGGGCGGCGCGGTCGATGTAGTTCATGGTGGTGGCGAAGAACCCCAGGGCGAgat                                                                      >  8:231793/1‑147 (MQ=255)
                                                                         gATGGCATAGCCGACCTGGAACCAGAAATTGATGTTGGCGTAGTCCATCGCCGTCCAGCTCATTTCCTTGGCCAGCACGGGCTGCATGATGCCAAGGGCGGCGCGGTCGATGTAGTTCAGGTTGGTGGCGAAGAACACCAGGGc                                                                           <  7:231793/144‑1 (MQ=255)
                                                                           tGGCATAGCCGACCTGGAACCAGAAATTGATGTTGGCGTAGTCCATCGCCGTCCAGCTCATTTCCTTGGCCAGCACGGGCTGCATGATGCCAAGGGCGGCGCGGTCGATGTAGTTCAGGGTGGTGGCGAAGAACACCAGGGCGAGCATg                                                                    <  6:272299/149‑1 (MQ=255)
                                                                             gCATCGCCGACCTGGAACGAGAAATTGATGTTGGCGTAGTCCATCGCCGTCCAGCTCATTTCCTTGGCCAGCACGGGCTGCATGATGCCAAGGGCGGCGCGGTCGATGTAGTTCAGGGTGGTGGCGAAGAACACCAGGGCGAGCATGc                                                                   <  4:333680/148‑1 (MQ=255)
                                                                             gCATAGCCGACCTGGAACCAGAAATTGATGTTGGCGTAGTCCATCGCCGTCCAGCTCATTTCCTTGGCCAGCACGGGCTGCATGATGCCAAGGGCGGCGCGGTCGATGTAGTTCAGGGTGGTGGCGAAGAACACCAGGGCGAGCATGc                                                                   <  8:257364/148‑1 (MQ=255)
                                                                                  gCCGACCTGGAACCAGAAATTGATGTTGGCGTAGTCCATCGCCGTCCAGCTCATTTCCTTGGCCAGCACGGGCTGCATGATGCCAAGGGCGGCGCGGTCGATGTAGTTCAGGGTGGTGGCGAAGAACACCAGGGCGAGCATGCCCCaa                                                              <  2:314/148‑1 (MQ=255)
                                                                                    cGACCTGGAACCAGAAATTGATGTTGGCGTAGTCCATCGCCGTCCAGCTCATTTCCTTGGCCAGCACGGGCTGCATGATGCCAAGGGCGGCGCGGTCGATGTAGTTCAGGGTGGTGGCGAAGAACACCAGGGCGAGCATGCCCCAACgg                                                           <  1:256370/149‑1 (MQ=255)
                                                                                          ggAACCAGAAATTGATGTTGGCGTAGTCCATCGCCGTCCAGCTCATTTCCTTGGCCAGCACGGGCTGCATGATGCCAAGGGCGGCGCGGTCGATGTAGTTCAGGGTGGTGGCGAAGAACACCAGGGCGAGCATGCCCCAACGGGTCTTg                                                     >  3:179249/1‑149 (MQ=255)
                                                                                           gAACCAGAAATTGATGTTGGCGTAGTCCATCGCCGTCCAGCTCATTTCCTTGGCCAGCACGGGCTGCATGATGCCAAGGGCGGCGCGGTCGATGTAGTTCAGGGTGGTGGCGAAGAACACCAGGGCGAGCATGCCCCAACGGGTCTTGc                                                    <  2:311001/149‑1 (MQ=255)
                                                                                             aCCAGAAATTGATGTTGGCGTAGTCCATCGCCGTCCAGCTCATTTCCTTGGCatcatgcagcccgtgctggccaaggaaatgagc                                                                                                                  <  4:37987‑M1/85‑34 (MQ=255)
                                                                                             aCCAGAAATTGATGTTGGCGTAGTCCATCGCCGTCCAGCTCATTTCCTTGGCatcatgcagcccgtgctggccaaggaaatgagc                                                                                                                  >  3:37987‑M1/1‑52 (MQ=255)
                                                                                                 gAAATTGATGTTGGCGTAGTCCATCGCCGTCCAGCTCATTTCCTTGGCCAGCACGGGCTGCATGATGCCAAGGGCGGCGCGGTCGATGTAGTTCAGGGTGGTGGCGAAGAACACCAgg                                                                             >  5:340470/1‑118 (MQ=255)
                                                                                                 gAAATTGATGTTGGCGTAGTCCATCGCCGTCCAGCTCATTTCCTTGGCCAGCACGGGCTGCATGATGCCAAGGGCGGCGCGGTCGATGTAGTTCAGGGTGGTGGCGAAGAACACCAgg                                                                             <  6:340470/118‑1 (MQ=255)
                                                                                                 gAAATTGATGTTGGCGTAGTCCATCGCCGTCCAGCTCATTTCCTTGGCCAGCACGGGCTGCATGATGCCAAGGGCGGCGCGGTCGATGTAGTTCAGGGTGGTGGCGAAGAACACCAGGGCGAGCATGCCCCAACGGGTCTTGCCGACGc                                              >  2:64209/1‑149 (MQ=255)
                                                                                                             ggCGTAGTCCATCGCCGTCCAGCTCATTTCCTTGGCCAGCACGGGCTGCATGATGCCAAGGGCGGCGCGGTCGATGTAGTTCAGGGTGGTGGCGAAGAACACCAGGGCGAGCATGCCCCAACGGGTCTTGCCGACGCCGAAGGcgccgc                                  >  8:222338/1‑149 (MQ=255)
                                                                                                                gTAGTCCATCGCCGTCCAGCTCATTTCCTTGGCCAGCACGGGCTGCATGATGCCAAGGGCGGCGCGGTCGATGTAGTTCAGGGTGGTGGCGAAGAACACCAGGGCGAGCATGCCCCAACGGGTCTTGCCGACGCCGAAGGCGCCGCGGa                               <  4:91507/149‑1 (MQ=255)
                                                                                                                gTAGTCCATCGCCGTCCAGCTCATTTCCTTGGCCAGCACGGGCTGCATGATGCCAAGGGCGGCGCGGTCGATGTAGTTCAGGGTGGTGGCGAAGAACACCAGGGCGAGCATGCCCCAACGGGTCTTGCCGACGCCGAAGGCGCCGCGGa                               <  3:308824/149‑1 (MQ=255)
                                                                                                                   gTCCATCGCCGTCCAGCTCATTTCCTTGGCCAGCACGGGCTGCATGATGCCAAGGGCGGCGCGGTCGATGTAGTTCAGGGTGGTGGCGAAGAACACCAGGGCGAGCATGCCCCAACGGGTCTTGCCGACGCCGAAGGCGCCGCGGAGCt                            >  5:49654/1‑149 (MQ=255)
                                                                                                                   gTCCATCGCAGTCCAGCTCATTTCCTTGGCCAGCACGGGCTGCATGATGCCAAGGGCGGCGCGGTCGATGTAGTTCAGGGTGGTGGCGAAGAACACCAGGGCGAGCATGCCCCAACGGGTCTTGCCGACGCCGAAGGCGCCGCGGAGCt                            >  4:159523/1‑149 (MQ=255)
                                                                                                                    tCCATCGCCGTCCAGCTCATTTCCTTGGCCAGCACGGGCTGCATGATGCCAAGGGCGGCGCGGTCGATGTAGTTCAGGGTGGTGGCGAAGAACACCAGGGCGAGCATGCCCCAACGGGTCTTGCCGACGCCGAAGGCGCCGCGGAGCtt                           >  4:76956/1‑149 (MQ=255)
                                                                                                                    tCCATCGCCGTCCAGCTCATTTCCTTGGCCAGCACGGGCTGCATGATGCCAAGGGCGGCGCGGTCGATGTAGTTCAGGGTGGTGGCGAAGAACACCAGGGCGAGCATGCCCCAACGGGTCTTGCCGACGCCGAAGGCGCCGCGGAGCtt                           >  7:202083/1‑149 (MQ=255)
                                                                                                                      cATCGCCGTCCAGCTCATTTCCTTGGCCAGCACGGGCTGCATGATGCCAAGGGCGGCGCGGTCGATGTAGTTCAGGGTGGTGGCGAAGAACACCAGGGCGAGCATGCCCCAACGGGTCTTGCCGACGCCGAAGGCGCCGCGGAGCTTg                          >  8:143830/1‑148 (MQ=255)
                                                                                                                        tCGCCGTCCAGCTCATTTCCTTGGCCAGCACGGGCTGCATGATGCCAAGGGCGGCGCGGTCGATGTAGTTCAGGGTGGTGGCGAAGAACACCAGGGCGAGCATGCCCCAACGGGTCTTGCCGACGCCGAAg                                         <  3:57731/131‑1 (MQ=255)
                                                                                                                        tCGCCGTCCAGCTCATTTCCTTGGCCAGCACGGGCTGCATGATGCCAAGGGCGGCGCGGTCGATGTAGTTCAGGGTGGTGGCGAAGAACACCAGGGCGAGCATGCCCCAACGGGTCTTGCCGACGCCGAAg                                         >  4:57731/1‑131 (MQ=255)
                                                                                                                          gCCGTCAAGCTCATTTCCTTGTCCAGCACGGGCTGCATGATGCCAAGGGCGGCGCGGTCGATGTAGTTCAGGGTGGTGGCGAAGAACACCAGGGCGAGCATGCCCCAACGGGTCTTGCCGACGCCGAAGGCGCCGCGGAGCTTGTCGc                      <  8:66311/148‑1 (MQ=255)
                                                                                                                            cGTCCAGCTCATTTCCTTGTCCAGCACGGGCTGCATGATGCCAAGGGCGGCGCGGTCGATGTAGTTCAGGTTGGTGGCGAAGAACACCAGGGCGAGCATGCCCCAACGGGTCTTGCCGACGCCGAAGGCGCCGCGGAGCTTGTCGCCGa                   <  3:159523/149‑1 (MQ=255)
                                                                                                                                cAGCTCATTTCCTTGGCCAGCACGGGCTGCATGATGCCAAGGGCGGCGCGGTCGATGTAGTTCAGGGTGGTGGCGAAGAACACCAGGGCGAGCATGCCCCAACGGGTCTTGCCGACGCCGAAGGCGCCGCGGAGCTTGTCGCCGATCGa               <  7:143830/149‑1 (MQ=255)
                                                                                                                                  gCTCATTTCCTTGGCCAGCACGGGCTGCATGATgccaaggaaatgagctggacggcgatggactacgccaacatcaatttctggt                                                                             <  4:37987‑M2/85‑53 (MQ=255)
                                                                                                                                  gCTCATTTCCTTGGCCAGCACGGGCTGCATGATgccaaggaaatgagctggacggcgatggactacgccaacatcaatttctggt                                                                             >  3:37987‑M2/1‑33 (MQ=255)
                                                                                                                                   cTCATTTCCTTGGCCAGCACGGGCTGCATGATGCCAAGGGCGGCGCGGTCGATGTAGTTCAGGGTGGTGGCGAAGAACACCAGGGCGAGCATGCCCCAACgg                                                           <  6:333647/102‑1 (MQ=255)
                                                                                                                                   cTCATTTCCTTGGCCAGCACGGGCTGCATGATGCCAAGGGCGGCGCGGTCGATGTAGTTCAGGGTGGTGGCGAAGAACACCAGGGCGAGCATGCCCCAACgg                                                           >  5:333647/1‑102 (MQ=255)
                                                                                                                                    tCATTTCCTTGGCCAGCACGGGCTGCATGATgccaaggaaatgagctggacggcgatggactacgccaacatcaatttctggttccaggtcggctatgccatcggctttttgctgcaaggccggctgatcgacaaggtcgga                  >  7:41324‑M2/1‑31 (MQ=255)
                                                                                                                                    tCATTTCCTTGGCCAGCACGGGCTGCATGATgccaaggaaatgagctggacggcgatggactacgccaacatcaatttctggttccaggtcggctatgccatcggctttttgctgcaaggccggctgatcgacaaggtcgga                  <  8:41324‑M2/142‑112 (MQ=255)
                                                                                                                                      aTTTCCTTGGCCAGCACGGGCTGCATGATGCCAAGGGCGGCGCGGTCGATGTAGTTCAGGGTGGTGGCGAAGAACACCAGGGCGAGCATGCCCCAACGGGTCTTGCCGACGCCGAAGGCGCCGCGGAGCTTGTCGCCGATCGAGCCCt          <  8:202083/148‑1 (MQ=255)
                                                                                                                                          ccTTGGCCAGCACGGGCTGCATGATGCCAAGGGCGGCGCGGTCGATGTAGTTCAGGGTGGTGGCGAAGAACACCAGGGCGAGCATGCCCCAACGGGTCTTGCCGACGCCGAAGGCGCCGCGGAGCTTGTCGCCGATCGAGCCCTGGGa      >  2:16193/1‑148 (MQ=255)
                                                                                                                                           cTTGGCCAGCACGGGCTGCATGATgccaaggaaatgagctggacggcgatggactacgccaacatcaatttctggttccaggtcggctatgccatcggctttttgctgcaaggccggctgatcgacaaggtcggagtcaaacgggcctt    <  7:225526‑M2/149‑126 (MQ=255)
                                                                                                                                            ttGGCatcatgcagcccgtgctggccaaggaaatgagctggacggcgatggactacgccaacatcaatttctggttccaggtcggctatgccatcggctttttgctgcaaggccggctgat                               >  1:287453‑M1/1‑5 (MQ=255)
                                                                                                                                            ttGGCatcatgcagcccgtgctggccaaggaaatgagctggacggcgatggactacgccaacatcaatttctggttccaggtcggctatgccatcggctttttgctgcaaggccggctgat                               <  2:287453‑M1/121‑117 (MQ=255)
                                                                                                                                            ttGGCCAGCACGGGCTGCATGATGCCAAGGGCGGCGCGGTCGATGTAGTTCAGGGTGGTGGCGAAGAACACCAGGGCGAGCATGCCCCAACGGGTCTTGCCGACGCCGAAGGCGCCGCGGAGCTTGTCGc                      <  3:119350/130‑1 (MQ=255)
                                                                                                                                            ttGGCCAGCACGGGCTGCATGATGCCAAGGGCGGCGCGGTCGATGTAGTTCAGGGTGGTGGCGAAGAACACCAGGGCGAGCATGCCCCAACGGGTCTTGCCGACGCCGAAGGCGCCGCGGAGCTTGTCGc                      >  4:119350/1‑130 (MQ=255)
                                                                                                                                             tGGCatcatgcagcccgtgctggccaaggaaatgagctggacggcgatggactacgccaacatcaatttctggttccaggtcggctatgccatcggctttttgctgcaaggccggctgatcgacaaggtcggagtcaaacgggccttct  >  5:207365‑M1/1‑4 (MQ=255)
                                                                                                                                             tGGCCAGCACGGGCTGCATGATGCCAAGGGCGGCGCGGTCGATGTAGTTCAGGGTGGTGGCGAAGAACACCAGGGCGAGCATGCCCCAACGGGTCTTGCCGACGCCGaa                                          >  8:38188/1‑109 (MQ=255)
                                                                                                                                                ccAGCACGGGCTGCATGATGCCAAGGGCGGCGCGGTCGATGTAGTTCAGGGTGGTGGCGAAGAACACCAGGGCGAGCATGCCCCAACGGGTCTTGCCGACGCCGaa                                          >  3:93741/1‑106 (MQ=255)
                                                                                                                                                ccAGCACGGGCTGCATGATGCCAAGGGCGGCGCGGTCGATGTAGTTCAGGGTGGTGGCGAAGAACACCAGGGCGAGCATGCCCCAACGGGTCTTGCCGACGCCGaa                                          <  4:93741/106‑1 (MQ=255)
                                                                                                                                                |                                                                                                                                                 
ACAGCAGTACAGCGAAGAAGAAGGCCCGTTTGACTCCGACCTTGTCGATCAGCCGGCCTTGCAGCAAAAAGCCGATGGCATAGCCGACCTGGAACCAGAAATTGATGTTGGCGTAGTCCATCGCCGTCCAGCTCATTTCCTTGGCCAGCACGGGCTGCATGATGCCAAGGGCGGCGCGGTCGATGTAGTTCAGGGTGGTGGCGAAGAACACCAGGGCGAGCATGCCCCAACGGGTCTTGCCGACGCCGAAGGCGCCGCGGAGCTTGTCGCCGATCGAGCCCTGGGACATC  >  NC_002947/2978030‑2978319

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.