New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3003147	56 (0.950)	4 (0.100) +AACTCCTGGGGGGTTGCACCTTGGCCAGACGGCCCTTGGGTGCCC	3/172	NT	11.1%	coding (1188/1464 nt)	PP_2626	hypothetical protein
	?	NC_002947	4600160 =	42 (0.710)					coding (1112/1467 nt)	PP_4072	hypothetical protein

AGTTCAGCGGCCTGCGCGAGGAGCTTGTCAGCCAGCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3003110‑3003147 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TTGAGCCAGGCCAGGCATTGGTCGTCGACAAACACCCGACCGTCGCTGAAGCACAGCTGCTGCAGC  >  NC_002947/4600160‑4600225                                       |||||||||||||||||||||||||||||||||||||||||||||                                                                   AGTTCAGCGGCCTGCGCGAGGAGCTTGTCAGCCAGCTGAACTCCTGGGGGGTTGCACCTTGGCCAGACGGCCCTTGGGTGCCCTTGAGCCAGGCCAGGCACTGGTCGTCGACAAATACCATGCCGTCGCTGAAGCACAGCTGCTGCAGC  >  5:80583/1‑149 AGTTCAGCGGCCTGCGCGAGGAGCTTGTCAGCCAGCTGAACTCCTGGGGGGTTGCACCTTGGCCAGACGGCCCTTGGGTGCCCTTGAGCCAGGCCAGGCACTGGTCGTCGACAAATACCATGCCGTCGCTGAAGCACAGCTGC        >  1:367229/1‑143 AGTTCAGCGGCCTGCGCGAGGAGCTTGTCAGCCAGCTGAACTCCTGGGGGGTTGCACCTTGGCCAGACGGCCCTTGGGTGCCCTTGAGCCAGGCCAGGCACTGGTCGTCGACAAATACCATGCCGTCGCTGAAGCACAGCTGC        <  2:367229/143‑1  GTTCAGCGGCCTGCGCGAGGAGCTTGTCAGCCAGCTGAACTCCTGGGGGGTTGCACCTTGGCCAGACGGCCCTTGGGTGCCCTTGAGCCAGGCCAGGCACTGGTCGTCGACAAATACCATGCCGTCGCTGAAGCACAGCTGCTGCAGC  >  5:188079/1‑148                                       |||||||||||||||||||||||||||||||||||||||||||||                                                                   AGTTCAGCGGCCTGCGCGAGGAGCTTGTCAGCCAGCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3003110‑3003147 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TTGAGCCAGGCCAGGCATTGGTCGTCGACAAACACCCGACCGTCGCTGAAGCACAGCTGCTGCAGC  >  NC_002947/4600160‑4600225

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.