New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3003147	56 (0.950)	4 (0.100) +AACTCCTGGGGGGTTGCACCTTGGCCAGACGGCCCTTGGGTGCCC	3/172	NT	11.1%	coding (1188/1464 nt)	PP_2626	hypothetical protein
	?	NC_002947	4600160 =	42 (0.710)					coding (1112/1467 nt)	PP_4072	hypothetical protein

AGGGGCTCGAAAATCTGCCTGCATCCCCTGCAGCCTTAGCAACACCGGTTCTACGCCGCCGCTTTCCAGCTGGCTGACCAGTTCTTCGCGAAGGCTGGTGAACTCTTGGGAAGCTTCGGCTTGCTCGGATTGCCCGTCTGCCCCTTTGAGCCAGGCCAGGCATTGGTCGTCGACAAACACCCGACCGTCGCTGAAGCACAGCTGCTGCAGCGCTGGCATGCGCAGCACGAAACGAGCGGTCGCCGCACGGATGGCCTCAGCCACTTCGCCCATCGCCAGCCGCGACGCGGC  >  NC_002947/4600015‑4600305                                                                                                                                                  |                                                                                                                                                  aGGGGCTCGAAAATCTGCCTGCATCCCCTGCAGCCTTAGCAACACCGGTTCTACGCCGCCGCTTTCCAGCTGGCTGACCAGTTCTTCGCGAAGGCTGGTGAACTCTTGGGAAGCTTCGGCTTGCTCGGATTGCCCGTCTGCCCCTTTGa                                                                                                                                                <  7:102462/149‑1 (MQ=255) aGGGGCTCGAAAATCTGCCTGCATCCCCTGCAGCCTTAGCAACACCGGTTCTACGCCGCCGCTTTCCAGCTGGCTGACCAGTTCTTCGCGAAGGCTGGTGAACTCTTGGGAAGCTTCGGCTTGCTCGGATTGCCCGTCTGCCCCTTTGa                                                                                                                                                <  3:2473/149‑1 (MQ=255)  gtggCTCGAAAATCTGCCTGCATCCCCTGCAGCCTTAGCAACACCGGTTCTACGCCGCCGCTTTCCAGCTGGCTGACCAGTTCTTCGCGAAGGCTGGTGAACTCTTGGGAAGCTTCGGCTTGCTCGGATTGCCCGTCTGCCCCTTTGAg                                                                                                                                               <  2:352374/147‑1 (MQ=255)         gAAAATCTGCCTGCATCCCCTGCAGCCTTAGCAACACCGGTTCTACGCCGCCGCTTTCCAGCTGGCTGACCAGTTCTTCGCGAAGGCTGGTGAACTCTTGGGAAGCTTCGGCTTGCTCGGATTGCCCGTCTGCCCCTTTGAgccaggc                                                                                                                                         >  8:172410/1‑148 (MQ=255)         gAAAATCTGCCTGCATCCCCTGCAGCCTTAGCAACAACGGTTCTACGCCGCCGCTTTCCAGCTGGCTGACCAGTTCTTCGCGAAGGCTGGTGAACTCTTGGGAAGCTTCGGCTTGCTAGGATTGCCCGTCTGCCCCTTTGAgccaggc                                                                                                                                         >  8:61567/1‑148 (MQ=255)           aaaTCTGCCTGCATCCCCTGCAGCCTTAGCAACACCGGTTCTACGCCGCCGCTTTCCAGCTGGCTGACCAGTTCTTCGCGAAGGCTGGTTAACTCTTGGGAAGCTTCGGCTTGCTCGGATTGCCCGTCTGCCCCTTTGAgccaggcca                                                                                                                                       <  1:105393/148‑1 (MQ=255)            aaTCTGCCTGCATCCCCTGCAGCCTTAGCAACACCGGTTCTACGCCGCCGCTTTCCAGCTGGCTGACCAGTTCTTCGCGAAGGCTGGTGAACTCTTGGGAAGCTTCGGCTTGCTCGGATTGCCCGTCTGCCCCTTTGAGccaggccagg                                                                                                                                     <  8:203102/149‑1 (MQ=255)             aTCTGCCTGCATCCCCTGCAGCCTTAGCAACACCGGTTCTACGCCGCCGCTTTCCAGCTGGCTGACCAGTTCTTCGCGAAGGCTGGTGAACTCTTGGGAAGCTTCGGCTTGCTCGGATTGCCCGTCTGCCCCTTTGAGCcaggccaggc                                                                                                                                    <  8:22846/149‑1 (MQ=255)                  cctgcATCCCCTGCAGCCTTAGCAACACCGGTTCTACGCCGCCGCTTTCCAGCTGGCTGACCAGTTCTTCGCGAAGGCTGGTGAACTCTTGGGAAGCTTCGGCTTGCTCGGATTGCCCGTCTGCCCCTTTGAGCCAGGCCAGGCATTgg                                                                                                                               <  5:235547/149‑1 (MQ=255)                  cctgcATCCCCTGCAGCCTTAGCAACACCGGTTCTACGCCGCCGCTTTCCAGCTGGCTGACCAGTTCTTCGCGAAGGCTGGTGAACTCTTGGGAAGCTTCGGCTTGCTCGGATTGCCCGTCTGCCCCTTTGAGCCAGGCCAGGCATTg                                                                                                                                <  2:235268/148‑1 (MQ=255)                      cATCCCCTGCAGCCTTAGCAACACCGGATCTACGCCGCCGCTTTCCAGCTGGCTGACCAGTTCTTCGCGAAGGCTGGTGAACTCTTGGGAAGCTTCGGCTTGCTCGGATTGCCCGTCTGCCCCTTTGAGCCAGGCCAGGCATTGgtc                                                                                                                             <  5:7306/147‑1 (MQ=255)                        tCCCCTGCAGCCTTAGCATCACCGGTTCTACGCCGCCGCTTTCCAGCTGGCTGACCAGTTCTTCGCGAAGGCTGGTGAACTCTTGGGAAGCTTCGGCTTGCTCGGATTGCCCGTCTGCCCCTTTGAGCCAGGCCAGGCATTGgtcgtc                                                                                                                          >  5:143394/1‑148 (MQ=255)                          cccTGCAGCCTTAGCAACACCGGTTCTACGCCGCCGCTTTCCAGCTGGCAGACCAGTTCTTCGCGAAGGCTGGTGAACTCTTGGGAAGCTTCGGCTTGCTCGGATTGCCCGTCTGCCCCTTTGAGCCAGGCCAGGCATTGGTCGTCGa                                                                                                                        <  7:172410/148‑1 (MQ=255)                           ccTGCAGCCTTAGCAACACCGGTTCTACGCCGCCGCTTTCCAGCTGGCTGACCAGTTCTTCGCGAAGGCTGGTGAACTCTTGGGAAGCTTCGGCTTGCTCGGATTGCCCGTCTGCCCCTTTGAGCCAGGCCAGGCATTGGTCGTCGAc                                                                                                                       >  3:68673/1‑148 (MQ=255)                           ccTGCAGCCTTAGCAACACCGGTTCTACGCCGCCGCTTTCCAGCTGGCTGACCAGTTCTTCGCGAAGGCTGGTGAACTCTTGGGAAGCTTCGGCTTGCTCGGATTGCCCGTCTGCCCCTTTGAGCCAGGCCAGGCATTGGTCGTCGACa                                                                                                                      <  4:304763/149‑1 (MQ=255)                                  ccTTAGCAACACCGGTTCTACGCCGCCGCTTTCCAGCTGGCTGACCAGTTCTTCGCGAAGGCTGGTGAACTCTTGGGAAGCTTCGGCTTGCTCGGATTGCCCGTCTGCCCCTTTGAGCCAGGCCAGGCATTGGTCGTCGACAAACAccc                                                                                                               >  7:296091/1‑149 (MQ=255)                                   cTTAGCAACACCGGTTCTACGCCGCCGCTTTCCAGCTGGCTGACCAGTTCTTCGCGAAGGCTGGTGAACTCTTGGGAAGCTTCGGCTTGCTCGGATTGCCCGTCTGCCCCTTTGAGCCAGGCCAGGCATTGGTCGTCGACAAACAccc                                                                                                               >  2:368819/1‑148 (MQ=255)                                    ttAGCAACACCGGTTCTACGCCGCCGCTTTCCAGCTGGCTGACCAGTTCTTCGCGAAGGCTGGTGAACTCTTGGGAAGCTTCGGCTTGCTCGGATTGCCCGTCTGCCCCTTTGAGCCAGGCCAGGCATTGGTCGTCGACAAACACCCGa                                                                                                             >  3:277510/1‑149 (MQ=255)                                         aaCACCGGTTCTACGCCGCCGCTTTCCAGCTGGCTGACCAGTTCTTCGCGAAGGCTGGTGAACTCTTGGGAAGCTTCGGCTTGCTCGGATTGCCCGTCTGCCCCTTTGAGCCAGGCCAGGCATTGGTCGTCGACAAACACCCGACCGTc                                                                                                        >  7:150431/1‑149 (MQ=255)                                         aaCACCGGTTCTACGCCGCCGCTTTCCAGCTGGCTGACCAGTTCTTCGCGAAGGCTGGTGAACTCTTGGGAAGCTTCGGCTTGCTCGGATTGCCCGTCTGCCCCTTTGAGCCAGGCCAGGCATTGGTCGTCGACAAACACCCGACCGTc                                                                                                        >  7:118759/1‑149 (MQ=255)                                         aaCACCGGTTCTACGCCGCCGCTTTCCAGCTGGCTGACCAGTTCTTCGCGAAGGCTGGTGAACTCTTGGGAAGCTTCGGCTTGCTCGGATTGCCCGTCTGCCCCTTTGAGCCAGGCCAGGCATTGGTCGTCGACAAACACCCGACCGTc                                                                                                        >  2:172782/1‑149 (MQ=255)                                            acCGGTTCTACGCCGCCGCTTTCCAGCTGGCTGACCAGTTCTTCGCGAAGGCTGGTGAACTCTTGGGAAGCTTCGGCTTGCTCGGATTGCCCGTCTGCCCCTTTGAGCCAGGCCAGGCATTGGTCGTCGACAAACACCCGACCGTCGCt                                                                                                     >  7:66794/1‑149 (MQ=255)                                            acCGGTTCTACGCCGCCGCTTTCCAGCTGGCTGACCAGTTCTTCGCGAAGGCTGGTGAACTCTTGGGAAGCTTCGGCTTGCTCGGATTGCCCGTCTGCCCCTTTGAGCCAGGCCAGGCATTGGTCGTCGACAAACACCCGACCGTCGCt                                                                                                     >  6:304942/1‑149 (MQ=255)                                            acCGGTTCTACGCCGCCGCTTTCCAGCTGGCTGACCAGTTCTTCGCGAAGGCTGGTGAACTCTTGGGAAGCTTCGGCTTGCTCGGATTGCCCGTCTGCCCCTTTGAGCCAGGCCAGGCATTGGTCGTCGACAAACACCCGACCGTCGCt                                                                                                     <  6:143394/149‑1 (MQ=255)                                                            cgcTTTCCAGCTGGCTGACCAGTTCTTCGCGAAGGCTGGTGAACTCTTGGGAAGCTTCGGCTTGCTCGGATTGCCCGTCTGCCCCTTTGAGCCAGGCCAGGCATTGGTCGTCGACAAACACCCGACCGTCGCTGAAGCACAGCtgctgc                                                                                     >  6:83563/1‑149 (MQ=255)                                                               agttcagcggcctgcgcgaggagcttgtcagccagctgaactcctggggggttgcaccttggccagacggcccttgggtgcccTTGAGCCAGGCCAGGCACTGGTCGTCGACAAATACCATGCCGTCGCTGAAGCACAgctgc                                                                                        <  2:367229‑M2/60‑1 (MQ=255)                                                               agttcagcggcctgcgcgaggagcttgtcagccagctgaactcctggggggttgcaccttggccagacggcccttgggtgcccTTGAGCCAGGCCAGGCACTGGTCGTCGACAAATACCATGCCGTCGCTGAAGCACAgctgc                                                                                        >  1:367229‑M2/84‑143 (MQ=255)                                                               agttcagcggcctgcgcgaggagcttgtcagccagctgaactcctggggggttgcaccttggccagacggcccttgggtgcccTTGAGCCAGGCCAGGCACTGGTCGTCGACAAATACCATGCCGTCGCTGAAGCACAGCTGCTGCAgc                                                                                  >  5:80583‑M2/84‑149 (MQ=255)                                                                gttcagcggcctgcgcgaggagcttgtcagccagctgaactcctggggggttgcaccttggccagacggcccttgggtgcccTTGAGCCAGGCCAGGCACTGGTCGTCGACAAATACCATGCCGTCGCTGAAGCACAGCTGCTGCAgc                                                                                  >  5:188079‑M2/83‑148 (MQ=255)                                                                   cAGCTGGCTGACCAGTTCTTCGCGAAGGCTGGTGAACTCTTGGGAAGCTTCGGCTTGCTCGGATTGCCCGTCTGCCCCTTTGAGCCAGGCCAGGCATTGGTCGTCGACAAACACCCGACCGTCGCTGAAGCACAGCTGCTGCAGCGCTg                                                                              <  5:83563/149‑1 (MQ=255)                                                                     gctggctgACCAGTTCTTCGCGAAGGCTGGTGAACTCTTGGGAAGCTTCGGCTTGCTCGGATTGCCCGTCTGCCCCTTTGAGCCAGGCCAGGCATTGGTCGTCGACAAACACCCGACCGTCGCTGAAGCACAGCTGCTGCAGCGCTGGc                                                                            <  1:172782/149‑1 (MQ=255)                                                                         gctgACCAGTTCTTCGCGAAGGCTGGTGAACTCTTGGGAAGCTTCGGCTTGCTCGGATTGCCCGTCTGCCCCTTTGAGCCAGGCCAGGCATTGGTCGTCGACAAACACCCGACCGTCGCTGAAGCACAGCTGCTGCAGCGCTGGCATg                                                                         <  8:118759/148‑1 (MQ=255)                                                                              ccAGTTCTTCGCGAAGGCTGGTGAACTCTTGGGAAGCTTCGGCTTGCTCGGATTGCCCGTCTGCCCCTTTGAGCCAGGCCAGGCATTGGTCGTCGACAAACACCCGACCGTCGCTGAAGCACAGCTGCTGCAGCGCTGGCATGCgcagc                                                                   <  4:68673/149‑1 (MQ=255)                                                                                  ttcttcGCGAAGGCTGGTGAACTCTTGGGAAGCTTCGGCTTGCTCGGATTGCCCGTCTGCCCCTTTGAGCCAGGCCAGGCATTGGTCGTCGACAAACACCCGACCGTCGCTGAAGCACAGCTGCTGCAGCGCTGGCATGCGCAGCACg                                                                >  6:327250/1‑148 (MQ=255)                                                                                  ttcttcGCGAAGGCTGGTGAACTCTTGGGAAGCTTCGGCTTGCTCGGATTGCCCGTCTGCCCCTTTGAGCCAGGCCAGGCATTGGTCGTCGACAAACACCCGACCGTCGCTGAAGCACAGCTGCTGCAGCGCTGGCATGCGCAGCACg                                                                >  3:322985/1‑148 (MQ=255)                                                                                        gcgAAGGCTGGTGAACTCTTGGGAAGCTTCGGCTTGCTCGGATTGCCCGTCTGCCCCTTTGAGCCAGGCCAGGCATTGGTCGTCGACAAACACCCGACCGTCGCTGAAGCACAGCTGCTGCAGCGCTGGCATGCGCAGCACGAAACGa                                                          <  8:66794/148‑1 (MQ=255)                                                                                         cgAAGGCTGGTGAACTCTTGGGAAGCTTCGGCTTGCTCGGATTGCCCGTCTGCCCCTTTGAGCCAGGCCAGGCATTGGTCGTCGACAAACACCCGACCGTCGCTGAAGCACAGCTGCTGCAGCGCTGGCATGCGCAGCACGAAACGAGc                                                        <  8:150431/149‑1 (MQ=255)                                                                                          gAAGGCTGGTGAACTCTTGGGAAGCTTCGGCTTGCTCGGATTGCCCGTCTGCCCCTTTGAGCCAGGCCAGGCATTGGTCGTCGACAAACACCCGACCGTCGCTGAAGCACAGCTGCTGCAGCGCTGGCATGCGCAGCACGAAACGAGCg                                                       >  2:228586/1‑149 (MQ=255)                                                                                                  gTGAACTCTTGGGAAGCTTCGGCTTGCTCGGATTGCCCGTCTGCCCCTTTGAGCCAGGCCAGGCATTGGTCGTCGACAAACACCCGACCGTCGCTGAAGCACAGCTGCTGCAGCGCTGGCATGCGCAGCACGAAACGAGCGGTcgccg                                                <  5:327250/148‑1 (MQ=255)                                                                                                        tctTGGGAAGCTTCGGCTTGCTCGGATTGCCCGTCTGCCCCTTTGAGCCAGGCCAGGCATTGGTCGTCGACAAACACCCGACCGTCGCTGAAGCACAGCTGCTGCAGCGCTGGCATGCGCAGCACGAAACGAg                                                         <  1:12393/133‑1 (MQ=255)                                                                                                        tctTGGGAAGCTTCGGCTTGCTCGGATTGCCCGTCTGCCCCTTTGAGCCAGGCCAGGCATTGGTCGTCGACAAACACCCGACCGTCGCTGAAGCACAGCTGCTGCAGCGCTGGCATGCGCAGCACGAAACGAg                                                         >  2:12393/1‑133 (MQ=255)                                                                                                            gggAAGCTTCGGCTTGCTCGGATTGCCCGTCTGCCCCTTTGAGCCAGGCCAGGCATTGGTCGTCGACAAACACCCGACCGTCGCTGAAGCACAGCTGCTGCAGCGCTGGCATGCGCAGCACGAAACGAGCGGTCGCCGCACGGATgg                                       <  1:368819/147‑1 (MQ=255)                                                                                                               aaGCTTCGGCTTGCTCGGATTGCCCGTCTGCCCCTTTGAGCCAGGCCAGGCATTGGTCGTCGACAAACACCCGACCGTCGCTGAAGCACAGCTGCTGCAGCGCTGGCATGCGCAGCACGAAACGAGCGGTCGCCGCACGGATGGCCTCa                                  <  7:61567/149‑1 (MQ=255)                                                                                                               aaGCTTCGGCTTGCTCGGATTGCCCGTCTGCCCCTTTGAGCCAGGCCAGGCATTGGTCGTCGACAAACACCCGACCGTCGCTGAAGCACAGCTGCTGCAGCGCTGGCATGCGCAGCACGAAACGAGCGGTCGCCGCACGGATGGCCTCa                                  <  1:330736/149‑1 (MQ=255)                                                                                                                   ttCGGCTTGCTCGGATTGCCCGTCTGCCCCTTTGAGCCAGGCCAGGCATTGGTCGTCGACAAACACCCGACCGTCGCTGAAGCACAGCTGCTGCAGCGCTGGCATGCGCAGCACGAAACGAGCGGTCGCCGCACGGATGGCCTCAGCCa                              >  4:105897/1‑149 (MQ=255)                                                                                                                         ttGCTCGGATTGCCCGTCTGCCCCTTTGAGCCAGGCCAGGCATTGGTCGTCGACAAACACCCGACCGTCGCTGAAGCACAGCTGCTGCAGCGCTGGCATGCGCAGCACGAAACGAGCGGTCGCCGCACGGATGGCCTCAGc                                <  6:220579/141‑1 (MQ=255)                                                                                                                         ttGCTCGGATTGCCCGTCTGCCCCTTTGAGCCAGGCCAGGCATTGGTCGTCGACAAACACCCGACCGTCGCTGAAGCACAGCTGCTGCAGCGCTGGCATGCGCAGCACGAAACGAGCGGTCGCCGCACGGATGGCCTCAGc                                >  5:220579/1‑141 (MQ=255)                                                                                                                           gCTCGGATTGCCCGTCTGCCCCTTTGAGCCAGGCCAGGCATTGGTCGTCGACAAACACCCGACCGTCGCTGAAGCACAGCTGCTGCAGCGCTGGCATGCGCAGCACGAAACGAGCGGTCGCCGCACGGATGGCCTCAGCCACTTCGcc                       >  7:207692/1‑148 (MQ=255)                                                                                                                             tCGGATTGCCCGTCTGCCCCTTTGAGCCAGGCCAGGCATTGGTCGTCGACAAACACCCGACCGTCGCTGAAGCACAGCTGCTGCAGCGCTGGCATGCGCAGCACGAAACGAGCGGTCGCCGCACGGATGGCCTCAGCCACTTCGCCCAt                    >  2:255526/1‑149 (MQ=255)                                                                                                                                             ccccTTTGAGCCAGGCCAGGCATTGGTCGTCGACAAACACCCGACCGTCGCTGAAGCACAGCTGCTGCAGCGCTGGCATGCGCAGCACGAAACGAGCGGTCGCCGCACGGATGGCCTCAGCCACTTCGCCCATCGCCAGCCGCGAcgcg    >  7:63341/1‑149 (MQ=255)                                                                                                                                             ccccTTTGAGCCAGGCCAGGCATTGGTCGTCGACAAACACCCGACCGTCGCTGAAGCACAGCTGCTGCAGCGCTGGCATGCGCAGCACGAAACGAGCGGTCGCCGCACGGATGGCCTCAGCCACTTCGCCCATCGCCAGCCGCGAcgcg    >  4:9553/1‑149 (MQ=255)                                                                                                                                              cccTTTGAGCCAGGCCAGGCATTGGTCGTCGACAAACACCCGACCGTCGCTGAAGCACAGCTGCTGCAGCGCTGGCATGCGCAGCACGAAACGAGCGGTCGCCGCACGGATGGCCTCAGCCACTTCGCCCATCGCCAGCCGCGACgcgg   >  5:160119/1‑149 (MQ=255)                                                                                                                                               ccTTTGAGCCAGGCCAGGCATTGGTCGTCGACAAACACCCGACCGTCGCTGAAGCACAGCTGCTGCAGCGCTGGCATGCGCAGCACGAAACGAGCGGTCGCCGCACGGATGGCCTCAGCCACTTCGCCCATCGCCAGCCGCGACgcggc  >  1:672/1‑149 (MQ=255)                                                                                                                                                  |                                                                                                                                                  AGGGGCTCGAAAATCTGCCTGCATCCCCTGCAGCCTTAGCAACACCGGTTCTACGCCGCCGCTTTCCAGCTGGCTGACCAGTTCTTCGCGAAGGCTGGTGAACTCTTGGGAAGCTTCGGCTTGCTCGGATTGCCCGTCTGCCCCTTTGAGCCAGGCCAGGCATTGGTCGTCGACAAACACCCGACCGTCGCTGAAGCACAGCTGCTGCAGCGCTGGCATGCGCAGCACGAAACGAGCGGTCGCCGCACGGATGGCCTCAGCCACTTCGCCCATCGCCAGCCGCGACGCGGC  >  NC_002947/4600015‑4600305

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.