New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3052628	52 (0.880)	4 (0.070)	4/254	NT	7.4%	coding (1328/1899 nt)	PP_2664	two‑component system sensor histidine kinase/response regulator
	?	NC_002947	= 3052652	50 (0.880)					coding (1352/1899 nt)	PP_2664	two‑component system sensor histidine kinase/response regulator

TCCGCTACACCCCCAGCGGGCGCGTGGTGCTGGGGTGTCGGCGCCTGCGCGGTGGCGTGCGGATTGAAGTATGGGACAGCGGCATCGGCATTGCCGAAGAACACCTGCAAGACATGTTCCTGGAGTTCAAGCGGGGTGATGTGCAGCGCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3052478‑3052628 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcccAGACCCAGCCCACGGTCCTGGTCCGGGCGCTGCACATCACCCCGCTTGAACTCCAGGAACATGTCTTGCAGGTGTTCTTCGGCAATGCCGATGCCGCTGTCCCATACTTCAATCCGCACGCCACCGCGCAGGCGCCGACACCCCAG  <  NC_002947/3052652‑3052507                                                                                                                                                                                                                                                                                                           TCCGCTACACCCCCAGCGGGCGCGTGGTGCTGGGGTGTCGGCGCCTGCGCGGTGGCGTGCGGATTGAAGTATGGGACAGCGGCATCGGCATTGCCGAAGAACACCTGCAAGACATGTTCCTGGAGTTCAAGCGGGGTGATGTGCAGCGC                                                                                                                                                      >  4:54875/1‑149                                             CTGCGCGGTGGCGTGCGGATTGAAGTATGGGACAGCGGCATCGGCATTGCCGAAGAACACCTGCAAGACATGTTCCTGGAGTTCAAGCGGGGTGATGTGCAGCGCCagcac                                                                                                                                                >  1:108258/1‑106                                             CTGCGCGGTGGCGTGCGGATTGAAGTATGGGACAGCGGCATCGGCATTGCCGAAGAACACCTGCAAGACATGTTCCTGGAGTTCAAGCGGGGTGATGTGCAGCGCCagcac                                                                                                                                                <  2:108258/111‑6                                                                      TATGGGACAGCGGCATCGGCATTGCCGAAGAACACCTGCAAGACATGTTCCTGGAGTTCAAGCGGGGTGATGTGCAGCGCCCAGACCCAGCCCACGGTCCTGGTCCGGGCGC                                                                                                                      >  1:301322/1‑112                                                                      TATGGGACAGCGGCATCGGCATTGCCGAAGAACACCTGCAAGACATGTTCCTGGAGTTCAAGCGGGGTGATGTGCAGCGCCCAGACCCAGCCCACGGTCCTGGTCCGGGCGC                                                                                                                      <  2:301322/112‑1                                                                              AGCGGCATCGGCATTGCCGAAGAACACCTGCAAGACATGTTCCTGGAGTTCAAGCGGGGTGATGTGCAGCGCCCAGACCCAGCCCACGGTCCTGGTCCGGGCGCT                                                                                                                     >  5:273915/1‑105                                                                              AGCGGCATCGGCATTGCCGAAGAACACCTGCAAGACATGTTCCTGGAGTTCAAGCGGGGTGATGTGCAGCGCCCAGACCCAGCCCACGGTCCTGGTCCGGGCGCT                                                                                                                     <  6:273915/105‑1                                                                                                                                                      CCAGACCCAGCCCACGGTCCTGGTCCGGGCGCTGCACATCACCCCGCTTGAACTCCAGGAACATGTCTTGCAGGTGTTCTTCGGCAATGCCGATGCCGCTGTCCCATACTTCAATCCGCACGCCACCGCGCAGGCGCCGACACCCCAG  >  7:184674/1‑148                                                                                                                                                                                                                                                                                                           TCCGCTACACCCCCAGCGGGCGCGTGGTGCTGGGGTGTCGGCGCCTGCGCGGTGGCGTGCGGATTGAAGTATGGGACAGCGGCATCGGCATTGCCGAAGAACACCTGCAAGACATGTTCCTGGAGTTCAAGCGGGGTGATGTGCAGCGCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3052478‑3052628 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcccAGACCCAGCCCACGGTCCTGGTCCGGGCGCTGCACATCACCCCGCTTGAACTCCAGGAACATGTCTTGCAGGTGTTCTTCGGCAATGCCGATGCCGCTGTCCCATACTTCAATCCGCACGCCACCGCGCAGGCGCCGACACCCCAG  <  NC_002947/3052652‑3052507

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.