New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 = 321703242 (0.710)4 (0.070) 4/250 NT 8.5% coding (2947/3129 nt) mexD multidrug RND transporter MexD
?NC_002947 = 3217055 46 (0.820)coding (2970/3129 nt) mexD multidrug RND transporter MexD

TTCGCCAAGGAACTGTGGGAGAAGGGCTACAGCCTGTGCGACGCCGCCATCGAGGCCGCGCGCCTGCGTTTCCGTCCGATCGTGATGACCTCCATGGCGTTCATCCTCGGCGTGGTGCCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3216912‑3217032
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgccgcACCCGCGCCGGAGGCGATGGCCAGCGGCACCACGCCGAGGATGAACGCCATGGAGGTCATCACGATCGGACGGAAACGCAGGCGCGCGGCCTCGATGGCGGCGTCGCACAGGCTGTAGCCCTTCTCCCACAGTTCCTTGGCGAACTC  <  NC_002947/3217055‑3216909
                                                                                                                                                                                                                                                                            
TTCGCCAAGGAACTGTGTGAGAAGGGATACAGCCGGTGCGACGCCGCCATCGAGGCCGCGCTCAGGCGGTTCCGTCCTATCTTGATGACATCCATGGCGTTCATCCTCGGCGTGTTGCCGCACCCGCGCCGGAGGCGATGGCCAGCGGC                                                                                                                         <  6:328169/149‑1
   GCCCAGGAACTGTGGGAGAAGGGCTACAGCCTGTGCAACGCCGCCAGCGAGGCCGCGCGCCTGCGTTGCCGTCCGAGCGTGATGACCTCCATGGCGTTCATCCTCGGCGTGGTGCCGCACCCGCGCCGGAGGCGATGGCCAGCGGCACC                                                                                                                      <  4:144149/149‑1
                                                   GAGGCCGCGCGCCTGCGTTTCCGTCCGATCGTGATGACCTCCATGGCGTTCATCCTCGGCGTGGTGCCGCACCCGCGCCGGAGGCGATGGCCAGCGG                                                                                                                          >  5:265466/1‑97
                                                   GAGGCCGCGCGCCTGCGTTTCCGTCCGATCGTGATGACCTCCATGGCGTTCATCCTCGGCGTGGTGCCGCACCCGCGCCGGAGGCGATGGCCAGCGG                                                                                                                          <  6:265466/97‑1
                                                                                                                        CACCCGCGCCGGAGGCGATGGCCAGCGGCACCACGCCGAGGATGAACGCCATGGAGGTCATCACGATCGGACGGAAACGCAGGCGCGCGGCCTCGATGGCGGCGTCGCACAGGCTGTAGCCCTTCTCCCACAGTTCCTTGGCGAACTC  >  2:203106/1‑148
                                                                                                                                                                                                                                                                            
TTCGCCAAGGAACTGTGGGAGAAGGGCTACAGCCTGTGCGACGCCGCCATCGAGGCCGCGCGCCTGCGTTTCCGTCCGATCGTGATGACCTCCATGGCGTTCATCCTCGGCGTGGTGCCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3216912‑3217032
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgccgcACCCGCGCCGGAGGCGATGGCCAGCGGCACCACGCCGAGGATGAACGCCATGGAGGTCATCACGATCGGACGGAAACGCAGGCGCGCGGCCTCGATGGCGGCGTCGCACAGGCTGTAGCCCTTCTCCCACAGTTCCTTGGCGAACTC  <  NC_002947/3217055‑3216909

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.