New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3217032	42 (0.710)	4 (0.070)	4/250	NT	8.5%	coding (2947/3129 nt)	mexD	multidrug RND transporter MexD
	?	NC_002947	= 3217055	46 (0.820)					coding (2970/3129 nt)	mexD	multidrug RND transporter MexD

AAGAACGCCATCCTGATCGTCGAGTTCGCCAAGGAACTGTGGGAGAAGGGCTACAGCCTGTGCGACGCCGCCATCGAGGCCGCGCGCCTGCGTTTCCGTCCGATCGTGATGACCTCCATGGCGTTCATCCTCGGCGTGGTGCCGCTGGCCATCGCCTCCGGCGCGGGTGCGGCAAGCCAGCGCGCCATCGGTACCGGCGTGATCGGCGGCATGCTCAGCGCCACCTTGCTGGGCGTGGTGTTCGTGCCGGTCTGTTTTGTCTGGGTGTTGACGTTGCTCAAGCGCAAGCCTT  >  NC_002947/3216888‑3217179                                                                                                                                                 |                                                                                                                                                    aagaaCGCCATCCTGATCGTCGAGTTCGCCAAGGAACTGTGGGAGAAGGGCTACAGCCTGTGCGACGCCGCCATCGAGGCCGCGCGCCTGCGTTTCCGTCCGATCGTGATGACCTCCATGGCGTTCATCCTCGGCGTGGTGCCGCTGGc                                                                                                                                                 >  3:178661/1‑149 (MQ=255)     aCGCCATCCTGATCGTCGAGTTCGCCAAGGAACTGTGGGAGAAGGGCTACAGCCTGTGCGACGCCGCCATCGAGGCCGCGCGCCTGCGTTTCCGTCCGATCGTGATGACCTCCATGGCGTTCATCCTCGGCGTGGTGCCGCTGGCCAt                                                                                                                                              <  5:118853/148‑1 (MQ=255)          aTCCTGATCGTCGAGTTCGCCAAGGAACTGTGGGAGAAGGGCTACAGCCTGTGCGACGCCGCCATCGAGGCCGCGCGCCTGCGTTTCCGTCCGATCGTGATGACCTCCATGGCGTTCATCCTCGGCGTGGTGCCGCTGGCCATCGCCTc                                                                                                                                        >  7:206311/1‑149 (MQ=255)           tCCTGATCGTCGAGTTCGCCAAGGAACTGTGGGAGAAGGGCTACAGCCTGTGCGACGCCGCCATCGAGGCCGCGAGCCTGAGTTTCCGTCCGATCGTGATGACCTCCATGGCGTTCATCATCGGCGTGGTGCAGCTGGCCATCGCCTcc                                                                                                                                       >  1:143765/1‑149 (MQ=255)                   gtcgAGTTCGCCAAGGAACTGTGGGAGAAGGGCTACAGCCTGTGCGACGCCGCCATCGAGGCCGCGCGCCTGCGTTTCCGTCCGATCGTGATGACCTCCATGGCGTTCATCCTCGGCGTGGTGCCGCTGGCCATCGCCTCCGGCGCgg                                                                                                                                <  4:336076/148‑1 (MQ=255)                   gtcgAGTTCGCCAAGGAACTGTGGGAGAAGGGCTACAGCCTGTGCGACGCCGCCATCGAGGCCGCGCGCCTGCGTTTCCGTCCGATCGTGATGACCTCCATGGCGTTCATCCTCGGCGTGGTGCCGCTGGCCATCGCCTCCGGCGCgg                                                                                                                                <  4:178661/148‑1 (MQ=255)                   gtcgAGTTCGCCAAGGAACTGTGGGAGAAGGGCTACAGCCTGTGCGACGCCGCCATCGAGGCCGCGCGCCTGCGTTTCCGTCCGATCGTGATGACCTCCATGGCGTTCATCCTCGGCGTGGTGCCGCTGGCCATCGCCTCCGGCGCgg                                                                                                                                <  4:12389/148‑1 (MQ=255)                    tcgAGTTCGCCAAGGAACTGTGGGAGAAGGGCTACAGCCTGTGCGACGCCGCCATCGAGGCCGCGCGCCTGCGTTTCCGTCCGATCGTGATGACCTCCATGGCGTTCATCCTCGGCGTGGTGCCGCTGGCCATCGCCTCCGGCGCGGGt                                                                                                                              >  3:266626/1‑149 (MQ=255)                      gAGTTCGCCAAGGAACTGTGGGAGAAGGGCTACAGCCTGTGCGACGCCGCCATCGAGGCCGCGCGCCTGCGTTTCCGTCCGATCGTGATGACCTCCATGGCGTTCATCCTCGGCGTGGTGCCGCTGGCCATCGCCTCCGGCGCGGGTg                                                                                                                             >  2:203106‑M2/1‑147 (MQ=255)                         ttCGCCAAGGAACTGTGTGAGAAGGGATACAGCCGGTGCGACGCCGCCATCGAGGCCGCGCTCAGGCGGTTCCGTCCTATCTTGATGACATCCATGGCGTTCATCCTCGGCGTGTTGCCGCacccgcgccggaggcgatggccagcggc                                                                                                                         <  6:328169‑M1/149‑29 (MQ=255)                            gCCCAGGAACTGTGGGAGAAGGGCTACAGCCTGTGCAACGCCGCCAGCGAGGCCGCGCGCCTGCGTTGCCGTCCGAGCGTGATGACCTCCATGGCGTTCATCCTCGGCGTGGTGCCGCacccgcgccggaggcgatggccagcggcacc                                                                                                                      <  4:144149‑M1/149‑32 (MQ=255)                                aGGAACTGTGGGAGAAGGGCTACAGCCTGTGCGACGCCGCCATCGAGGCCGCGCGCCTGCGTTTCCGTCCGATCGTGATGACCTCCATGGCGTTCATCCTCGGCGTGGTGCCGCTGGCCATCGCCTCCGGCGCGGGTGCGGCAAGCCAg                                                                                                                  <  7:88449/149‑1 (MQ=255)                                       gtgGGAGAAGGGCTACAGCCTGTGCGACGCCGCCATCGAGGCCGCGCGCCTGCGTTTCCGTCCGATCGTGATGACCTCCATGGCGTTCATCCTCGGCGTGGTGCCGCTGGCCATCGCCTCCGGCGCGGGTGCGGCAAGCCAGCGCGCCa                                                                                                           >  5:133387/1‑149 (MQ=255)                                       gtgGGAGAAGGGCTACAGCCTGTGCGACGCCGCCATCGAGGCCGCGCGCCTGCGTTTCCGTCCGATCGTGATGACCTCCATGGCGTTCATCCTCGGCGTGGTGCCGCTGGCCATCGCCTCCGGCGCGGGTGCGGCAAGCCAGCGCGCCa                                                                                                           >  2:93583/1‑149 (MQ=255)                                                 ggCTACAGCCTGTGCGACGCCGCCATCGAGGCCGCGCGCCTGCGTTTCCGTCCGATCGTGATGACCTCCATGGCGTTCATCCTCGGCGTGGTGCCGCTGGCCATCGCCTCCGGCGCGGGTGCGGCAAGCCAGCGCGCCATCGGTACCgg                                                                                                 >  2:273519/1‑149 (MQ=255)                                                       aGCCTGTGCGACGCCGCCATCGAGGCCGCGCGCCTGCGTTTCCGTCCGATCGTGATGACCTCCATGGCGTTCATCCTCGGCGTGGTGCCGCTGGCCATCGCCTCCGGCGCGGGTGCGGCAAGCCAGCGCGCCATCGGTACCGGCGTGAt                                                                                           <  8:206311/149‑1 (MQ=255)                                                             tgCGACGCCGCCATCGAGGCCGCGCGCCTGCGTTTCCGTCCGATCGTGATGACCTCCATGGCGTTCATCCTCGGCGTGGTGCCGCTGGCCATCGCCTCCGGCGCGGGTGCGGCAAGCCAGCGCGCCATCGGTACCGGCGTGATcggcg                                                                                      <  4:266626/148‑1 (MQ=255)                                                              gCGACGCCGCCATCGAGGCCGCGCGCCTGCGTTTCCGTCCGATCGTGATGACCTCCATGGCGTTCATCCTCGGCGTGGTGCCGCTGGCCATCGCCTCCGGCGCGGGTGCGGCAAGCCAGCGCGCCATCGGTAcc                                                                                                   <  6:102545/134‑1 (MQ=255)                                                              gCGACGCCGCCATCGAGGCCGCGCGCCTGCGTTTCCGTCCGATCGTGATGACCTCCATGGCGTTCATCCTCGGCGTGGTGCCGCTGGCCATCGCCTCCGGCGCGGGTGCGGCAAGCCAGCGCGCCATCGGTAcc                                                                                                   >  5:102545/1‑134 (MQ=255)                                                                      gccATCGAGGCCGCGCGTCTGCGTTTCCGTCCGATCGTGATGACCTCCATGGCGTTCATCCTCGGCGTGGTGCCGCTGACCATCGCCTCCGGCGCGGGTGCGGCAAGCCAGCGCGCCATCGGTACCGGCGTGATCGGCGGCATGCTCAg                                                                            >  6:47602/1‑149 (MQ=255)                                                                            gAGGCCGCGCGCCTGCGTTTCCGTCCGATCGTGATGACCTCCATGGCGTTCATCCTCGGCGTGGTGCCGCacccgcgccggaggcgatggccagcgg                                                                                                                          <  6:265466‑M1/97‑28 (MQ=255)                                                                            gAGGCCGCGCGCCTGCGTTTCCGTCCGATCGTGATGACCTCCATGGCGTTCATCCTCGGCGTGGTGCCGCacccgcgccggaggcgatggccagcgg                                                                                                                          >  5:265466‑M1/1‑70 (MQ=255)                                                                             aGGCCGCGCGCCTGCGTTTCCGTCCGATCGTGATGACCTCCATGGCGTTCATCCTCGGCGTGGTGCCGCTGGCCATCGCCTCCGGCGCGGGTGCGGCAAGCCAGCGCGCCATCGGTACCGGCGTGATCGGCGGCATGCTCAGCGCCAcc                                                                     >  7:217284/1‑149 (MQ=255)                                                                                  gcgcgcCTGCGTTTCCGTCCGATCGTGATGACCTCCATGGCGTTCATCCTCGGCGTGGTGCCGCTGGCCATCGCCTCCGGCGCGGGTGCGGCAAGCCAGCGCGCCATCGGTACCGGCGTGATCGGCGGCATGCTCAGCGCCACCTTGCt                                                                >  3:22831/1‑149 (MQ=255)                                                                                    gcgcCTGCGTTTCCGTCCGATCGTGATGACCTCCATGGCGTTCATCCTCGGCGTGGTGCCGCTGGCCATCGCCTCCGGCGCGGGTGCGGCAAGCCAGCGCGCCATCGGTACCGGCGTGATCGGCGGCATGCTCAGCGCCACCTTGCTgg                                                              >  1:138602/1‑149 (MQ=255)                                                                                        cTGCGTTTCCGTCCGATCGTGATGACCTCCATGGCGTTCATCCTCGGCGTGGTGCCGCTGGCCATCGCCTCCGGCGCGGGTGCGGCAAGCCAGCGCGCCATCGGTACCGGCGTGATCGGCGGCATGCTCAGCGCCACCTTGCTGGGCgt                                                          <  8:217284/149‑1 (MQ=255)                                                                                        cTGCGTTTCCGTCCGATCGTGATGACCTCCATGGCGTTCATCCTCGGCGTGGTGCCGCTGGCCATCGCCTCCGGCGCGGGTGCGGCAAGCCAGCGCGCCATCGGTACCGGCGTGATCGGCGGCATGCTCAGCGCCACCTTGCTGGGCgt                                                          <  4:22831/149‑1 (MQ=255)                                                                                           cGTTTCCGTCCGATCGTGATGACCTCCATGGCGTTCATCCTCGGCGTGGTGCCGCTGGCCATCGCCTCCGGCGCGGGTGCGGCAAGCCAGCGCGCCATCGGTACCGGCGTGATCGGCGGCATGCTCAGCGCCACCTTGCTGGGCgtg                                                         <  6:133387/147‑1 (MQ=255)                                                                                           cGTTTCCGTCCGATCGTGATGACCTCCATGGCGTTCATCCTCGGCGTGGTGCCGCTGGCCATCGCCTCCGGCGCGGGTGCGGCAAGCCAGCGCGCCATCGGTACCGGCGTGATCGGCGGCATGCTCAGCGCCACCTTGCTGGGCgtg                                                         <  6:194696/147‑1 (MQ=255)                                                                                           cGTTTCCGTCCGATCGTGATGACCTCCATGGCGTTCATCCTCGGCGTGGTGCCGCTGGCCATCGCCTCCGGCGCGGGTGCGGCAAGCCAGCGCGCCATCGGTACCGGCGTGATCGGCGGCATGCTCAGCGCCACCTTGCTGGGCgtg                                                         <  1:93583/147‑1 (MQ=255)                                                                                             tttCCGTCCGATCGTGATGACCTCCATGACGTTCATCCTCGGCGTGGTGCCGCTGGCCATCGCCTCCGGCGCGGGTGCGGCAAGCCAGCGCGCCATCGGTACCGGCGTGATCGGCGGCATGCTCAGCGCCACCTTGCTGGGCGTGgtgt                                                     >  1:219480/1‑149 (MQ=255)                                                                                                         gaggatgaACGCCATGGAGGTCATCCTCGGCGTGGTGCCGCTGGCCATCGCCTCCGGCGCGGGTGCGGCAAGCCAGCGCGCCATCGGTACCGGCGTGATCGGCGGCATGCTCAgc                                                                           <  6:327044/112‑1 (MQ=25)                                                                                                         gaggatgaACGCCATGGAGGTCATCCTCGGCGTGGTGCCGCTGGCCATCGCCTCCGGCGCGGGTGCGGCAAGCCAGCGCGCCATCGGTACCGGCGTGATCGGCGGCATGCTCAgc                                                                           >  5:327044/4‑115 (MQ=25)                                                                                                          gTGATGACCTCCATGGCGTTCATCCTCGGCGTGGTGCCGCTGGCCATCGCCTCCGGCGCGGGTGCGGCAAGCCAGCGCGCCATCGGTACCGGCGTGATCGGCGGCATGCTCAGCGCCACCTTGCTGGGCGTGGTGTTCGTGCCGGTCt                                         <  1:273519/148‑1 (MQ=255)                                                                                                            gatgaCCTCCATGGCGTTCATCCTCGGCGTGGTGCCGCTGGCCATCGCCTCCGGCGCGGGTGCGGCAAGCCAGCGCGCCATCGGTACCGGCGTGATCGGCGGCATGCTCAGCGCCACCTTGCTgg                                                              >  5:246671/1‑125 (MQ=255)                                                                                                            gatgaCCTCCATGGCGTTCATCCTCGGCGTGGTGCCGCTGGCCATCGCCTCCGGCGCGGGTGCGGCAAGCCAGCGCGCCATCGGTACCGGCGTGATCGGCGGCATGCTCAGCGCCACCTTGCTgg                                                              <  6:246671/125‑1 (MQ=255)                                                                                                             atgaCCTCCATGGCGTTCATCCTCGGCGTGGTGCCGCTGGCCATCGCCTCCGGCGCGGGTGCGGCAAGCCAGCGCGCCATCGGTACCGGCGTGATCGGCGGCATGCTCAGCGCCACCTTGCTGGGCGTGGTGTTCGTGCCGGTCTGttt                                     >  5:6753/1‑149 (MQ=255)                                                                                                               gaCCTCCATGGCGTTCATCCTCGGCGTGGTGCCGCTGGCCATCGCCTCCGGCGCGGGTGCGGCAAGCCAGCGCGCCATCGGTACCGGCGTGATCGGCGGCATGCTCAgc                                                                           <  3:88771/109‑1 (MQ=255)                                                                                                                     cATGGCGTTCATCCTCGGCGTGGTGCCGCTGGCCATCGCCTCCGGCGCGGGTGCGGCAAGCCAGCGCGCCATCGGTACCGGCGTGATCGGCGGCATGCTCAGCGCCACCTTGCTGGGCGTGGTGTTCGTGCCGGTCTGTTTTGTCTggg                             >  5:220198/1‑149 (MQ=255)                                                                                                                      aTGGCGTTCATCCTCGGCGTGGTGCCGCTGGCCATCGCCTCCGGCGCGGGTGCGGCAAGCCAGCGCGCCATCGGTACCGGCGTGATCGGCGGCATGCTCAGCGCCACCTTGCTGGGCGTGGTGTTCGTGCCGGTCTGTTTTGTCTGGgt                            <  6:6753/149‑1 (MQ=255)                                                                                                                       tGGCGTTCATCCTCGGCGTGGTGCCGCTGGCCATCGCCTCCGGCGCGGGTGCGGCAAGCCAGCGCGCCATCGGTACCGGCGTGATCGGCGGCATGCTCAGCGCCACCTTGCTGGGCGTGGTGTTCGTGCCGGTCTGTTTTGTCTGGgtg                           >  6:86829/1‑149 (MQ=255)                                                                                                                              cATCCTCGGCGTGGTGCCGCTGGCCATCGCCTCCGGCGCGGGTGCGGCAAGCCAGCGCGCCATCGGTACCGGCGTGATCGGCGGCATGCTCAGCGCCACCTTGCTGGGCGTGGTGTTCGTGCCGGTCTGTTTTGTCTGGGTGTTGACg                     <  2:219480/148‑1 (MQ=255)                                                                                                                               aTCCTCGGCGTGGTGCCGCTGGCCATCGCCTCCGGCGCGGGTGCGGCAAGCCAGCGCGCCATCGGTACCGGCGTGATCGGCGGCATGCTCAGCGCCACCTTGCTGGGCgtg                                                         <  5:287646/111‑1 (MQ=255)                                                                                                                               aTCCTCGGCGTGGTGCCGCTGGCCATCGCCTCCGGCGCGGGTGCGGCAAGCCAGCGCGCCATCGGTACCGGCGTGATCGGCGGCATGCTCAGCGCCACCTTGCTGGGCgtg                                                         >  6:287646/1‑111 (MQ=255)                                                                                                                                 ccTCGGCGTGGTGCCGCTGGCCATCGCCTCCGGCGCGGGTGCGGCAAGCCAGCGCGCCATCGGTACCGGCGTGATCGGCGGCATGCTCAGCGCCACCTTGCTGGGCGTGGTGTTCGTGCCGGTCTGTTTTGTCTgg                              <  4:275146/136‑1 (MQ=255)                                                                                                                                 ccTCGGCGTGGTGCCGCTGGCCATCGCCTCCGGCGCGGGTGCGGCAAGCCAGCGCGCCATCGGTACCGGCGTGATCGGCGGCATGCTCAGCGCCACCTTGCTGGGCGTGGTGTTCGTGCCGGTCTGTTTTGTCTgg                              >  3:275146/1‑136 (MQ=255)                                                                                                                                   tCGGCGTGGTGCCGCTGGCCATCGCCTCCGGCGCGGGTGCGGCAAGCCAGCGCGCCATCGGTACCGGCGTGATCGGCGGCATGCTCAGCGCCACCTTGCTGGGCGTGGTGTTCGTGCCGGTCTGTTTTGTCTGGGTGTTGACGTTGCt                >  3:178831/1‑148 (MQ=255)                                                                                                                                          ggtgCCGCTGGCCATCGCCTCCGGCGCGGGTgcggcaccacgccgaggatgaacgccatggaggtcatcacgctcggacggcaacgcaggcgcgcggcctcgctggcggcgttgcacaggctgtagcccttctcccacagttcctgggc        <  4:144149‑M2/149‑119 (MQ=255)                                                                                                                                           gtgCCGCTGGCCATCGCCTCCGGCGCGGGTGCGGCAAGCCAGCGCGCCATCGGTACCGGCGTGATCGGCGGCATGCTCAGCGCCACCTTGCTGGGCGTGGTGTTCGTGCCGGTCTGTTTTGTCTGGGTGTTGACGTTGCTCAAgcgc         >  5:92957/1‑147 (MQ=255)                                                                                                                                             gCCGCTGGCCATCGCCTCCGGCGCGGGTgcggcaacacgccgaggatgaacgccatggatgtcatcaagataggacggaaccgcctgagcgcggcctcgatggcggcgtcgcaccggctgtatcccttctcacacagttccttggcgaa     <  6:328169‑M2/149‑122 (MQ=255)                                                                                                                                              ccGCTGGCCATCGCCTCCGGCGCGGGTgcggcaccacgccgaggatgaacgccatggaggtcatcacgatcggacggaaacgcaggcgcgcggcctc                                                        >  5:265466‑M2/1‑27 (MQ=255)                                                                                                                                              ccGCTGGCCATCGCCTCCGGCGCGGGTgcggcaccacgccgaggatgaacgccatggaggtcatcacgatcggacggaaacgcaggcgcgcggcctc                                                        <  6:265466‑M2/97‑71 (MQ=255)                                                                                                                                                 cacccgcgccggaggcgatggccagcggcaccacgccgaggatgaacgccatggaggtcatcacgatcggacggaaacgcaggcgcgcggcctcgatggcggcgtcgcacaggctgtagcccttctcccacagttccttggcgaactc  >  2:203106‑M1/1‑1 (MQ=255)                                                                                                                                                 |                                                                                                                                                    AAGAACGCCATCCTGATCGTCGAGTTCGCCAAGGAACTGTGGGAGAAGGGCTACAGCCTGTGCGACGCCGCCATCGAGGCCGCGCGCCTGCGTTTCCGTCCGATCGTGATGACCTCCATGGCGTTCATCCTCGGCGTGGTGCCGCTGGCCATCGCCTCCGGCGCGGGTGCGGCAAGCCAGCGCGCCATCGGTACCGGCGTGATCGGCGGCATGCTCAGCGCCACCTTGCTGGGCGTGGTGTTCGTGCCGGTCTGTTTTGTCTGGGTGTTGACGTTGCTCAAGCGCAAGCCTT  >  NC_002947/3216888‑3217179

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.