New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3301817 =	68 (1.150)	7 (0.120)	6/252	NT	9.7%	coding (166/1704 nt)	glnS	glutamine‑‑tRNA ligase
	?	NC_002947	3301856 =	65 (1.150)					coding (205/1704 nt)	glnS	glutamine‑‑tRNA ligase

CACTCGAAGCCCAGCCATTTGACATCGCTCTGGATGGCGTCGATGTACTCCTGGTCTTCCTTGGCCGGGTTGGTATCGTCGAAACGCAGGTGGCAGACGCCGCCGAATTCCTTGGCCAGGCCGAAGTTGACGCAGATCGACTTGGCGTGGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/3301968‑3301817 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tggccAAGGAATTCGGCGGCGTCTGCCACCTGCGTTTCGACGATACCAACCCGGCCAAGGAAGACCAGGAGTACATCGACGCCATCCAGAGCGATGTCAAATGGCTGGGCTTCGAGTGGGGCGGCGACGTGCGTTACGCCTCCGACTACTTC  >  NC_002947/3301856‑3302002                                                                                                                                                                                                                                                                                                             CACTCGAAGCCCAGCCATTTGACATCGCTCTGGATGGCGTCGATGTACTCCTGGTCTTCCTTGGCCGGGTTGGTATCGTCGAAACGCAGGTGGCAGACGCCGCCGAATTCCTTGGCCAGGCCGAAGTTGACGCAGATCGACTTGGCGTG                                                                                                                                                        >  1:189466/1‑149   CTCGAAGCCCAGCCATTTGACATCGCTCTGGATGGCGTCGATGTACTCCTGGTCTTCCTTGGCCGGGTTGGTATCGTCGAAACGCAGGTGGCAGACGCCGCCGAATTCCTTGGCCAGGCCGAAGTTGACGCAGATCGACTTGGCGTGGC                                                                                                                                                      >  6:176950/1‑149    TCGAAGCCCAGCCATTTGACATCGCTCTGGATGGCGTCGATGTACTCCTGGTCTTCCTTGGCCGGGTTGGTATCGTCGAAACGCAGGTGGCAGACGCCGCCGAATTCCTTGGCCAGGCCGAAGTTGACGCAGATCGACTTGGCGTGGCC                                                                                                                                                     >  8:167915/1‑149    TCGAAGCCCAGCCATTTGACATCGCTCTGGATGGCGTCGATGTACTCCTGGTCTTCCTTGGCCGGGTTGGTATCGTCGAAACGCAGGTGGCAGACGCCGCCGAATTCCTTGGCCAGGCCGAAGTTGACGCAGATCGACTTGGCGTGGCC                                                                                                                                                     >  4:362247/1‑149    TCGAAGCCCAGCCATTTGACATCGCTCTGGATGGCGTCGATGTACTCCTGGTCTTCCTTGGACGGGTTGGTATCGACGAAACGCAGGTGGCAGACGCCGCCGAATTCCTTGGCCAGGCCGAAGTTGACGCAGATCGACTTCGCGTGGCC                                                                                                                                                     >  6:216567/1‑149                                                                                                               CTTGGCCAGGCCGAAGTTGACGCAGATCGACTTGGCGTGGCCAAGGAATTCGGCGGCGTCTGCCACCTGCGTTTCGACGATACCAACCCGGCCAAGGAAGACCAGGAGTACATCGACGCCATCCAGAGCGATGTCAAATGGCTGGGCTT                                          >  6:140512/1‑149                                                                                                                TTGGCCAGGCCGAAGTTGACGCAGATCGACTTGGCGTGGCCAAGGAATTCGGCGGCGTCTGCCACCTGCGTTTCGACGATACCAACCCGGCCAAGGAAGACCAGGAGTACATCGACGCCATCCAGAGCGATGTCAAATGGCTGGGCTTC                                         >  3:96457/1‑149                                                                                                                 TGGCCAGGCCGAAGTTGACGCAGATCGACTTGGCGTGGCCAAGGAATTCGGCGGCGTCTGCCACCTGCGTTTCGACGATACCAACCCGGCCAAGGAAGACCAGGAGTACATCGACGCCATCCAGAGCGATGTCAAATGGCTGGGCTTCG                                        >  6:51153/1‑149                                                                                                                    CCAGGCCGAAGTTGCCGCAGATCGACTTGGCGTGGCCAAGGAATTCGGCGGCGTCTGCCACCTGCGTTTCGACGATACCAACCCGGCCAAGGAAGACCAGGAGTACATCGACGCCATCCAGAGCGATGTCAAATGGCTGGGCTTCGAGT                                     >  5:375452/1‑149                                                                                                                    CCAGGCCGAAGTTGACGCAGATCGACTTGGCGTGGCCAAGGAATTCGGCGGCGTCTGCCACCTGCGTTTCGACGATACCAACCCGGCCAAGGAAGACCAGGAGTACATCGACGCCATCCAGAGCGATGTCAAATGGCT                                                <  6:99202/138‑1                                                                                                                    CCAGGCCGAAGTTGACGCAGATCGACTTGGCGTGGCCAAGGAATTCGGCGGCGTCTGCCACCTGCGTTTCGACGATACCAACCCGGCCAAGGAAGACCAGGAGTACATCGACGCCATCCAGAGCGATGTCAAATGGCT                                                >  5:99202/1‑138                                                                                                                                     CAGATCGACTTGGCGTGGCCAAGGAATTCGGCGGCGTCTGCCACCTGCGTTTCGACGATACCAACCCGGCCAAGGAAGACCAGGAGTACATCGACGCCATCCAGAGCGATGTCAAATGGCTGGGCTTCGAGTGGGGCGGTGACGTGCGT                    <  5:51153/149‑1                                                                                                                                                      GCCAAGGAATTCGGCGGCGTCTGCCACCTGCGTTTCGACGATACCAACCCGGCCAAGGAAGACCAGGAGTACATCGACGCCATCCAGAGCGATGTCAAATGGCTGGGCTTCGAGTGGGGCGGCGACGTGCGTTACGCCTCCGACTACTT   <  5:222379/149‑1                                                                                                                                                       CCAAGGAATTCGGCGGCGTCTGCCACCTGCGTTTCGACGATACCAACCCGGCCAAGGAAGACCAGGAGTACATCGACGCCATCCAGAGCGATGTCAAATGGCTGGGCTTCGAGTGGGGCGGCGACGTGCGTTACGCCTCCGACTACTTC  <  5:152427/149‑1                                                                                                                                                        CAAGGAATTCGGCGGCGTCTGCCACCTGCGTTTCGACGATACCAACCCGGCCAAGGAAGACCAGGAGTACATCGACGCCATCCAGAGCGATGTCAAATGGCTGGGCTTCGAGTGGGGCGGCGACGTGCGTTACGCCTCCGACTACTTC  >  5:95106/1‑148                                                                                                                                                        CAAGGAATTCGGCGGCGTCTGCCACCTGCGTTTCGACGATACCAACCCGGCCAAGGAAGACCAG                                                                                      <  2:37561/64‑1                                                                                                                                                        CAAGGAATTCGGCGGCGTCTGCCACCTGCGTTTCGACGATACCAACCCGGCCAAGGAAGACCAG                                                                                      >  1:37561/1‑64                                                                                                                                                                                                                                                                                                             CACTCGAAGCCCAGCCATTTGACATCGCTCTGGATGGCGTCGATGTACTCCTGGTCTTCCTTGGCCGGGTTGGTATCGTCGAAACGCAGGTGGCAGACGCCGCCGAATTCCTTGGCCAGGCCGAAGTTGACGCAGATCGACTTGGCGTGGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/3301968‑3301817 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tggccAAGGAATTCGGCGGCGTCTGCCACCTGCGTTTCGACGATACCAACCCGGCCAAGGAAGACCAGGAGTACATCGACGCCATCCAGAGCGATGTCAAATGGCTGGGCTTCGAGTGGGGCGGCGACGTGCGTTACGCCTCCGACTACTTC  >  NC_002947/3301856‑3302002

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.