New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3320230 =	57 (0.970)	3 (0.050)	3/244	NT	5.8%	intergenic (‑85/‑36)	PP_2919/ybgL	LysR family transcriptional regulator/nitrogen‑containing compound degradation protein
	?	NC_002947	3320274 =	44 (0.800)					coding (9/759 nt)	ybgL	nitrogen‑containing compound degradation protein

GAAACCAGTGGCGATGTTGGCGCTGCTGATGTAACCCATCAGCTCATTGTCGACGCCATCGCCAATGGTCCACGGGCCAAAGCCCTCACCCATGTCCGAGTTGAAATCCACTGCTTGCATGACCGCGTCTCCTGGCACTTGTGACTGCATGCAAGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/3320385‑3320230 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑catgcaagcAGTGGATTTCAACTCGGACATGGGTGAGGGCTTTGGCCCGTGGACCATTGGCGATGGCGTCGACAATGAGCTGATGGGTTACATCAGCAGCGCCAACATCGCCACTGGTTTCCATGCCGGCGACCCCGGCACCATGCGCCGCACCGTC  >  NC_002947/3320274‑3320421                                                                                                                                                                                                                                                                                                                  GAAACCAGTGGCGATGTTGGCGCTGCTGATGTAACCCATCAGCTCATTGTCGACGCCATCGCCAATGGTCCACGGGCCAAAGCCCTCACCCATGTCCGAGTTGAAATCCACTGCTTGCATGACCGCGTCTCCTGGCACTTGTGACTGC                                                                                                                                                              <  1:213538/148‑1    ACCAGTGGCGATGTTGGCGCTGCTGATGTAACCCATCAGCTCATTGTCGACGCCATCGCCAATGGTCCACGGGCCAAAGCCCTCACCCATGTCCGAGTTGAAATCCACTGCTTGCATGACCGCGTCTCCTGGCACTTGTGACTGCATGC                                                                                                                                                          <  1:226020/149‑1      CAGTGGCGATGTTGGCGCTGCTGATGTAACCCATCAGCTCATTGTCGACGCCATCGCCAATGGTCCACGGGCCAAAGCCCTCACCCATGTCCGAGTTGAAATCCACTGCTTGCATGACCGCGTCTCCTGGCACTTGTGACTGCATGCAA                                                                                                                                                        <  5:321171/149‑1      CAGTGGCGATGTTGGCGCTGCTGATGTAACCCATCAGCTCATTGTCGACGCCATCGCCAATGGTCCACGGGCCAAAGCCCTCACCCATGTCCGAGTTGAAATCCACTGCTTGCATGACCGCGTCTCCTGGCACTTGTGACTGCATGC                                                                                                                                                          >  2:317995/1‑147      CAGTGGCGATGTTGGCGCTGCTGATGTAACCCATCAGCTCATTGTCGACGCCATCGCCAATGGTCCACGGGCCAAAGCCCTCACCCATGTCCGAGTTGAAATCCACTGCTTGCATGACCGCGTCTCCTGGCACTTGTGACTGCATGC                                                                                                                                                          >  2:323327/1‑147       AGTGGCGATGTTGGCGCTGCTGATGTAACCCATCAGCTCATTGTCGACGCCATCGCCAATGGTCCACGGGCCAAAGCCCTCACCCATGTCCGAGTTGAAATCCACTGCTTGCATGACCGCGTCTCCTGGCACTTGTGACTGCATGCAAG                                                                                                                                                       <  6:93368/149‑1                                                         CATCGCCAATGGTCCACGGGCCAAAGCCCTCACCCATGTCCGAGTTGAAATCCACTGCTTGCATGACCGCGTCTCCTGGCACTTGTGACTGCATGC                                                                                                                                                          <  1:316122/96‑1                                                         CATCGCCAATGGTCCACGGGCCAAAGCCCTCACCCATGTCCGAGTTGAAATCCACTGCTTGCATGACCGCGTCTCCTGGCACTTGTGACTGCATGC                                                                                                                                                          >  2:316122/1‑96                                                                                                              ACTGCTTGCATGACCGCGTCTCCTGGCACTTGTGACTGCATGCAAGCAGTGGATTTCAACTCGGACATGGGTGAGGGCTTTGGCCCGTGGACCATTGGCGATGGCGTCGACAATGAGCTGATGGGTTACATCAGCAGCGCCAACATCGC                                                >  2:226424/1‑149                                                                                                                 GCTTGCATGACCGCGTCTCCTGGCACTTGTGACTGCATGCAAGCAGTGGATTTCAACTCGGACATGGGTGAGGGCTTTGGCCCGTGGACCATTGGCGATGGCGTCGACAATGAGCTGATGGGTTACATCAGCAGCCCCAACATCGCCAC                                             >  5:197012/1‑149                                                                                                                     GCATGACCGCGTCTCCTGGCACTTGTGACTGCATGCAAGCAGTGGATTTCAACTCGGACATGGGTGAGGGCTTTGGCCCGTGGACCATTGGCGATGGCGTCGACAATGAGCTGATGGGTTACATCAGCAGCGCCAACATCGCCACTG                                           <  1:226424/147‑1                                                                                                                                                     ATGCAAGCAGTGGATTTCAACTCGGACATGGGTGAGGGCTTTGGCCCGTGGACCATTGGCGATGGCGTCGACAATGAGCTGATGGGTTACATCAGCAGCGCCAACATCGCCACTGGTTTCCATGCCGGCGACCCCGGCACCATGCGCCG         >  1:9858/1‑149                                                                                                                                                            CAGTGGATTTCAACTCGGACATGGGTGAGGGCTTTGGCCCGTGGACCATTGGCGATGGCGTCGACAATGAGCTGATGGGTTACATCAGCAGCGCCAACATCGCCACTGGTTTCCATGCCGGCGACCCCGGCACCATGCGCCGCACCGTC  <  5:93368/149‑1                                                                                                                                                            CAGTGGATTTCAACTCGGACATGGGTGAGGGCTTTGGCCCGTGGACCATTGGCGATGGCGTCGACAATGAGC                                                                               <  5:225169/72‑1                                                                                                                                                            CAGTGGATTTCAACTCGGACATGGGTGAGGGCTTTGGCCCGTGGACCATTGGCGATGGCGTCGACAATGAGC                                                                               >  6:225169/1‑72                                                                                                                                                                                                                                                                                                                  GAAACCAGTGGCGATGTTGGCGCTGCTGATGTAACCCATCAGCTCATTGTCGACGCCATCGCCAATGGTCCACGGGCCAAAGCCCTCACCCATGTCCGAGTTGAAATCCACTGCTTGCATGACCGCGTCTCCTGGCACTTGTGACTGCATGCAAGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/3320385‑3320230 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑catgcaagcAGTGGATTTCAACTCGGACATGGGTGAGGGCTTTGGCCCGTGGACCATTGGCGATGGCGTCGACAATGAGCTGATGGGTTACATCAGCAGCGCCAACATCGCCACTGGTTTCCATGCCGGCGACCCCGGCACCATGCGCCGCACCGTC  >  NC_002947/3320274‑3320421

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.