New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | 3320230 = | 57 (0.970) | 3 (0.050) | 3/244 | NT | 5.8% | intergenic (‑85/‑36) | PP_2919/ybgL | LysR family transcriptional regulator/nitrogen‑containing compound degradation protein |
? | NC_002947 | 3320274 = | 44 (0.800) | coding (9/759 nt) | ybgL | nitrogen‑containing compound degradation protein |
GCGCAGGGTGAGTGACACGGTAGGCTCCCGGGGTATCTGTTTTTCAGAAGGTACCCCATCTGTTTATAGATCTTCCCAAGGGGGTGCGGAGAATCTAACGTGGCTTGCATGCAGTCACAAGTGCCAGGAGACGCGGTCATGCAAGCAGTGGATTTCAACTCGGACATGGGTGAGGGCTTTGGCCCGTGGACCATTGGCGATGGCGTCGACAATGAGCTGATGGGTTACATCAGCAGCGCCAACATCGCCACTGGTTTCCATGCCGGCGACCCCGGCACCATGCGCCGCACCGTC > NC_002947/3320128‑3320421 | gcgatgttggcgctgctgatgtaacccatcagctcattgtcgacgccatcgccaatggtccacgggccaaagccctcacccatgtccgagttgaaatccactGCTTGCATGCAGTCACAAGTGCCAGGAGACGCGGTCATGCAAGCAGt > 2:226424‑M1/103‑149 (MQ=255) gcAGGGTGAGTGACACGGTAGGCTCCCGGGGTATCTGTTTTTCAGAAGGTACCCCATCTGTTTATAGATCTTCCCAAGGGGGTGCGGAGAATCTAACGTGGCTTGCATGCAGTCACAAGTGCCAGGAGACGCGGTCATGCAAGCAGTgg < 3:248961/149‑1 (MQ=255) tgaCACGGTAGGCTCCCGGGGTATCTGTTTTTCAGAAGGTACCCCATCTGTTTATAGATCTTCCCAAGGGGGTGCGGAGAATCTAACGTGGCTTGCATGCAGTCACAAGTGCCAGGAGACGCGGTCATGCAAGCAGTGGATTTCAACTc < 3:204061/149‑1 (MQ=255) tAGGCTCCCGGGGTATCTGTTTTTCAGAATGTACCCCATCTGTTTATAGATCTTCCCAAGGGGGTGCGGAGAATCTAACGTGGCTTGCATGCAGTCACAAGTGCCAGGAGACGCGGTCATGCAAGCAGTGGATTTCAACTCGGACATgg < 7:308919/149‑1 (MQ=255) ggCTCCCGGGGTATCTGTTTTTCAGAAGGTACCCCATCTGTTTATAGATCTTCCCAAGGGGGTGCGGAGAATCTAACGTGGCTTGCATGCAGTCACAAGTGCCAGGAGACGCGGTCATGCAAGCAGTGGATTTCAACTCGGACATGGGt < 2:143372/149‑1 (MQ=255) ccGGGGTATCTGTTTTTCAGAAGGTACCCCATCTGTTTATAGATCTTCCCAAGGGGGTGCGGAGAATCTAACGTGGCTTGCATGCAGTCACAAGTGCCAGGAGACGCGGTCATGCAAGCAGTGGATTTCAACTCGGACATGGGTGAgg < 8:111383/148‑1 (MQ=255) ccGGGGTATCTGTTTTTCAGAAGGTACCCCATCTGTTTATAGATCTTCCCAAGGGGGTGCGGAGAATCTAACGTGGCTTGCATGCAGTCACAAGTGCCAGGAGACGCGGTCATGCAAGCAGTGGATTTCAACTCGGACATGGGTGAg < 2:119831/147‑1 (MQ=255) gTATCTGTTTTTCAGAAGGTACCCCATCTGTTTATAGATCTTCCCAAGGGGGTGCGGAGAATCTAACGTGGCTTGCATGCAGTCACAAGTGCCAGGAGACGCGGTCATGCAAGCAGTGGATTTCAACTCGGACATGGGTGAGGGCTTTg < 8:112833/149‑1 (MQ=255) tCTGTTTTTCAGAAGGTACCCCATCTGTTTATAGATCTTCCCAAGGGGGTGCGGAGAATCTAACGTGGCTTGCATGCAGTCACAAGTGCCAGGAGACGCGGTCATGCAAGCAGTGGATTTCAACTCGGACATgg > 5:278225/1‑134 (MQ=255) tCTGTTTTTCAGAAGGTACCCCATCTGTTTATAGATCTTCCCAAGGGGGTGCGGAGAATCTAACGTGGCTTGCATGCAGTCACAAGTGCCAGGAGACGCGGTCATGCAAGCAGTGGATTTCAACTCGGACATgg < 6:278225/134‑1 (MQ=255) tCTGTTTTTCAGAAGGTACCCCATCTGTTTATAGATCTTCCCAAGGGGGTGCGGAGAATCTAACGTGGCTTGCATGCAGTCACAAGTGCCAGGAGACGCGGTCATGCAAGCAGTGGATTTCAACTCGGACATGGGTGAGGGCTTTGGcc > 6:190512/1‑149 (MQ=255) gTTTTTCAGAAGGTACCCCATCTGTTTATAGATCTTCCCAAGGGGGTGCGGAGAATCTAACGTGGCTTGCATGCAGTCACAAGTGCCAGGAGACGCGGTCATGCAAGCAGTGGATTTCAACTCGGACATGGGTGAGGGCTTTGGCCCGt > 5:204719/1‑149 (MQ=255) aGAAGGTACCCCATCTGTTTATAGATCTTCCCAAGGGGGTGCGGAGAATCTAACGTGGCTTGCATGCAGTCACAAGTGCCAGGAGACGCGGTCTAGCAAGCAGTGGATTTCAACTCGGACATGGGTGAGGGCTTTGGCCCGTGGACCa < 1:97142/148‑1 (MQ=255) aGGTACCCCATCTGTTTATAGATCTTCCCAAGGGGGTGCGGAGAATCTAACGTGGCTTGCATGCAGTCACAAGTGCCAGGAGACGCGGTCATGCAAGCAGTGGATTTCAACTCGGACATGGGTGAGGGCTTTGGCCCGTGGACCATTgg > 2:63234/1‑149 (MQ=255) ggTACCCCATCTGTTTATAGATCTTCCCAAGGGGGTGCGGAGAATCTAACGTGGCTTGCATGCAGTCACAAGTGCCAGGAGACGCGGTCATGCAAGCAGTGGATTTCAACTCGGACATGGGTGAGGGCTTTGGCCCGTGGACCATTGGc < 1:78766/149‑1 (MQ=255) ccccATCTGTTTATAGATCTTCCCAAGGGGGTGCGGAGAATCTAACGTGGCTTGCATGCAGTCACAAGTGCCAGGAGACGCGGTCATGCAAGCAGTGGATTTCAACTCGGACATGGGTGAGGGCTTTGGCCCGTGGACCATTGGCGATg < 2:141631/149‑1 (MQ=255) cccATCTGTTTATAGATCTTCCCAAGGGGGTGCGGAGAATCTAACGTGGCTTGCATGCAGTCACAAGTGCCAGGAGACGCGGTCATGCAAGCAGTGGATTTCAACTCGGACATGGGTGAGGGCTTTGGCCCGTGGACCATTGGCGATgg > 8:281145/1‑149 (MQ=255) cATCTGTTTATAGATCTTCCCAAGGGGGTGCGGAGAATCTAACGTGGCTTGCATGCAGTCACAAGTGCCAGGAGACGCGGTCATGCAAGCAGTGGATTTCAACTCGGACATGGGTGAGGGCTTTGGCCCGTGGACCATTGGCGATGGCg > 5:217344/1‑149 (MQ=255) aTCTGTTTATAGATCTTCCCAAGGGGGTGCGGAGAATCTAACGTGGCTTGCATGCAGTCACAAGTGCCAGGAGACGCGGTCATGCAAGCAGTGGATTTCAACTCGGACATGGGTGAGGGCTTTGGCCCGTGGACCATTGGCGATGGCGt < 8:212148/149‑1 (MQ=255) tataGATCTTCCCAAGGGGGTGCGGAGAATCTAACGTGGCTTGCATGCAGTCACAAGTGCCAGGAGACGCGGTCATGCAAGCAGTGGATTTCAACTCGGACATGGGTGAGGGCTTTGGCCCGTGGACCATTGGCGAt > 1:297933/1‑137 (MQ=255) tataGATCTTCCCAAGGGGGTGCGGAGAATCTAACGTGGCTTGCATGCAGTCACAAGTGCCAGGAGACGCGGTCATGCAAGCAGTGGATTTCAACTCGGACATGGGTGAGGGCTTTGGCCCGTGGACCATTGGCGAt < 2:297933/137‑1 (MQ=255) tataGATCTTCCCAAGGGGGTGCGGAGAATCTAACGTGGCTTGCATGCAGTCACAAGTGCCAGGAGACGCGGTCATGCAAGCAGTGGATTTCAACTCGGACATGGGTGAGGGCTTTGGCCCGTGGACCATTGGCGATGGCGTCGACAAt > 1:146813/1‑149 (MQ=255) ataGATCTTCCCAAGGGGGTGCGGAGAATCTAACGTGGCTTGCATGCAGTCACAAGTGCCAGGAGACGCGGTCATGCAAGCAGTGGATTTCAACTCGGACATGGGTGAGGGCTTTGGCCCGTGGACCATTGGCGATGGCGTCGACAAt > 6:239338/1‑148 (MQ=255) taGATCTTCCCAAGGGGGTGCGGAGAATCTAACGTGGCTTGCATGCAGTCACAAGTGCCAGGAGACACGGTCATGCAAGCAGTGGATTTCAACTCGGACATGGGTGAGGGCTTTGGCCCGTGGAGCTGTGGCGGGGGGGTGGGCAATgg > 4:293182/1‑148 (MQ=255) cTTCCCTAGGGGGTGCTGAGAATCTAACGTGGCTTGCATGCAGTCACAAGTGCCAGGAGACGCGGTCATGCAAGCAGTGGATTTCAACTCGGACATGGGTGAGGGCTTTGGCCCGTGGa < 6:362814/119‑1 (MQ=255) ccAAGGGGGTGCGGAGAATCTAACGTGGCTTGCATGCAGTCACAAGTGCCAGGAGACGCGGTCATGCAAGCAGTGGATTTCAACTCGGACATGGGTGAGGGCTTTGGCCCGTGGACCATTGGCGATGGCGTCGACAATGAGCTGATggg > 1:317995/1‑149 (MQ=255) ccAAGGGGGTGCGGAGAATCTAACGTGGCTTGCATGCAGTCACAAGTGCCAGGAGACGCGGTCATGCAAGCAGTGGATTTCAACTCGGACATGGGTGAGGGCTTTGGCCCGTGGACCATTGGCGATGGCGTCGACAATGAGCTGATggg > 1:323327/1‑149 (MQ=255) aaGGGGGTGCGGAGAATCTAACGTGGCTTGCATGCAGTCACAAGTGCCAGGAGACGCGGTCATGCAAGCAGTGGATTTCAACTCGGACATGGGTGAGGGCTTTGGCCCGTGGACCATTGGCGAt < 7:327200/124‑1 (MQ=255) aaGGGGGTGCGGAGAATCTAACGTGGCTTGCATGCAGTCACAAGTGCCAGGAGACGCGGTCATGCAAGCAGTGGATTTCAACTCGGACATGGGTGAGGGCTTTGGCCCGTGGACCATTGGCGAt > 8:327200/1‑124 (MQ=255) gTGCGGAGAATCTAACGTGGCTTGCATGCAGTCACAAGTGCCAGGAGACGCGGTCATGCAAGCAGTGGATTTCAACTCGGACATGGGTGAGGGCTTTGGCCCGTGGACCATTGGCGATGGCGTCGACAATGAGCTGATGGGTTACATca < 5:239338/149‑1 (MQ=255) gTGCGGAGAATCTAACGTGGCTTGCATGCAGTCACAAGTGCCAGGAGACACGGTCATGCAAGCAGTGGATTTCAACTCGGACATGGGTGAGGGCTTTGGCCCGTGGACCATTGGCGATGGCGTCGACAATGAGCTGATGGGTTACATca < 3:293182/149‑1 (MQ=255) cGGAGAATCTAACGTGGCTTGCATGCAGTCACAAGTGCCAGGAGACGCGGTCATGCAAGCAGTGGATTTCAACTCGGACATGGGTGAGGGCTTTGGCCCGTGGACCATTGGCGATGGCGTCGACAATGAGCTGATGGGTTACATcag > 7:142054/1‑147 (MQ=255) gagaATCTAACGTGGCTTGCATGCAGTCACAAGTGCCAGGAGACGCGGTCATGCAAGCAGTGGATTTCAACTCGGACATGGGTGAGGGCTTTGGCCCGTGGACCATTGGCGATGGCGTCGACAATGAGCTGATGGGTTACATCagcagc > 4:232839/1‑149 (MQ=255) gagaATCTAACGTGGCTTGCATGCAGTCACAAGTGCCAGGAGACGCGGTCATGCAAGCAGTGGATTTCAACTCGGACATGGGTGAGGGCTTTGGCCCGTGGACCATTGGCGATGGCGTCGACAATGAGCTGATGGGTTACATCagcagc > 4:306992/1‑149 (MQ=255) gagaATCTAACGTGGCTTGCATGCAGTCACAAGTGCCAGGAGACGCGGTCATGCAAGCAGTGGATTTCAACTCGGACATGGGTGAGGGCTTTGGCCCGTGGACCATTGGCGATGGCGTCGACAATGAGCTGATGGGTTACATCagcagc > 4:345259/1‑149 (MQ=255) aaTCTAACGTTGCTTGCATGCATTCACACTTGCCAGGAGACGCGGTCATGCCAGCAGTTGATTTCAACTCGGACATGGGTGAGGGCTTTGGCCCGTGGACCATTGGCGATGGCGTCGACAATGAGCTGATGGGTTACATCAGCAGCGcc < 8:298686/149‑1 (MQ=255) cTAACGTGGCTTGCATGCCGTCACAAGTGCCAGGAGACGCGGTCATGCAAGCAGTGGATTTCACCTCGGACATGGGTGAGGGCTTTGGCCCGTGGACCATTGGCGATGGCGTCGACAATGAGCTGa < 8:124242/126‑1 (MQ=255) cTAACGTGGCTTGCATGCAGTCACAAGTGCCAGGAGACGCGGTCATGCAAGCAGTGGATTTCACCTCGGACATGGGTGAGGGCTTTGGCCCGTGGACCATTGGCGATGGCGTCGACAATGAGCTGa > 7:124242/1‑126 (MQ=255) aCGTGGCTTGCATGCAGTCACAAGTGCCAGGAGACGCGGTCATGCAAGCAGTGGATTTCAACTCGGACATGGGTGAGGGCTTTGGCCCGTGGACCATTGGCGATGGCGTCGACAATGAGCTGATGGGTTACATCAGCAGCGCCAACATc < 7:281145/149‑1 (MQ=255) gTGGCTTGCATGCAGTCACAAGTGCCAGGAGACGCGGTCATGCAAGCAGTGGATTTCAACTCGGACATGGGTGAGGGCTTTGGCCCGTGGACCATTGGCGATGGCGTCGACAATGAGCTGATGGGTTACATCAGCAGCGCCAACATCGc > 1:19760/1‑149 (MQ=255) actgcttgcatgaccgcgtctcctggcacttgtgactgcatgcaagcAGTGGATTTCAACTCGGACATGGGTGAGGGCTTTGGCCCGTGGACCATTGGCGATGGCGTCGACAATGAGCTGATGGGTTACATCAGCAGCGCCAACATCGc > 2:226424‑M2/48‑149 (MQ=255) gcttgcatgaccgcgtctcctggcacttgtgactgcatgcaagcAGTGGATTTCAACTCGGACATGGGTGAGGGCTTTGGCCCGTGGACCATTGGCGATGGCGTCGACAATGAGCTGATGGGTTACATCAGCAGCCCCAACATCGCCAc > 5:197012‑M2/45‑149 (MQ=255) CTTGCATGCAGTCACAAGTGCCAGGAGACGCGGTCATGCAAGCAGTGGATTTCAACTCGGACATGGGTGAGGGCTTTGGCCCGTGGACCATTGGCGATGGCGTCGACAATGAGCTGATGGGTTACATCAGCAGCGCCAACATCGCCACt < 6:93368‑M1/149‑1 (MQ=255) TTGCATGCAGTCACAAGTGCCAGGAGACGCGGTCATGCAAGCAGTGGATTTCAACTCGGACATGGGTGAGGGCTTTGGCCCGTGGACCATTGGCGATGGCGTCGACAATGAGCTGATGGGTTACATCAGCAGCGCCAACATCGCCACTg < 5:321171‑M1/149‑1 (MQ=255) gcatgaccgcgtctcctggcacttgtgactgcatgcaagcAGTGGATTTCAACTCGGACATGGGTGAGGGCTTTGGCCCGTGGACCATTGGCGATGGCGTCGACAATGAGCTGATGGGTTACATCAGCAGCGCCAACATCGCCACTg < 1:226424‑M2/107‑1 (MQ=255) GCATGCAGTCACAAGTGCCAGGAGACGCGGTCATGCAAGCAGTGGATTTCAACTCGGACATGGGTGAGGGCTTTGGCCCGTGGACCATTGGCGATg < 1:316122‑M1/96‑1 (MQ=255) GCATGCAGTCACAAGTGCCAGGAGACGCGGTCATGCAAGCAGTGGATTTCAACTCGGACATGGGTGAGGGCTTTGGCCCGTGGACCATTGGCGATg > 2:316122‑M1/1‑96 (MQ=255) GCATGCAGTCACAAGTGCCAGGAGACGCGGTCATGCAAGCAGTGGATTTCAACTCGGACATGGGTGAGGGCTTTGGCCCGTGGACCATTGGCGATGGCGTCGACAATGAGCTGATGGGTTACATCAGCAGCGCCAACATCGCCACTg > 2:317995‑M1/1‑147 (MQ=255) GCATGCAGTCACAAGTGCCAGGAGACGCGGTCATGCAAGCAGTGGATTTCAACTCGGACATGGGTGAGGGCTTTGGCCCGTGGACCATTGGCGATGGCGTCGACAATGAGCTGATGGGTTACATCAGCAGCGCCAACATCGCCACTg > 2:323327‑M1/1‑147 (MQ=255) GCATGCAGTCACAAGTGCCAGGAGACGCGGTCATGCAAGCAGTGGATTTCAACTCGGACATGGGTGAGGGCTTTGGCCCGTGGACCATTGGCGATGGCGTCGACAATGAGCTGATGGGTTACATCAGCAGCGCCAACATCGCCACTGGt < 1:226020‑M1/149‑1 (MQ=255) GCAGTCACAAGTGCCAGGAGACGCGGTCATGCAAGCAGTGGATTTCAACTCGGACATGGGTGAGGGCTTTGGCCCGTGGACCATTGGCGATGGCGTCGACAATGAGCTGATGGGTTACATCAGCAGCGCCAACATCGCCACTGGTTTc < 1:213538‑M1/148‑1 (MQ=255) caGTCACAAGTGCCAGGAGACGCGGTCATGCAAGCAGTGGATTTCAACTCGGACATGGGTGAGGGCTTTGGCCCGTGGACCATTGGCGATGGCGTCGACAATGAGCTGATGGGTTACATCAGCAGCGCCAACATCGCCACTGGt > 3:299591/1‑144 (MQ=255) caGTCACAAGTGCCAGGAGACGCGGTCATGCAAGCAGTGGATTTCAACTCGGACATGGGTGAGGGCTTTGGCCCGTGGACCATTGGCGATGGCGTCGACAATGAGCTGATGGGTTACATCAGCAGCGCCAACATCGCCACTGGt < 4:299591/144‑1 (MQ=255) gCCAGGAGACGCGGTCATGCAAGCAGTGGATTTCAACTCGGACATGGGTGAGGGCTTTGGCCCGTGGACCATTGGCGATGGCGTCGACAATGAGCTGATGGGTTACATCAGCAGCGCCAACATCGCCACTGGTTTCCATGCCGGCGAcc > 4:61650/1‑149 (MQ=255) cAGGAGACGCGGTCATGCAAGCAGTGGATTTCAACTCGGACATGGGTGAGGGCTTTGGCCCGTGGACCATTGGCGATGGCGTCGACAATGAGCTGATGGGTTACATCAGCAGCGCCAACATCGCCACTGGTTTCCATGCCGGCGAcccc < 3:345259/149‑1 (MQ=255) cAGGAGACGCGGTCATGCAAGCAGTGGATTTCAACTCGGACATGGGTGAGGGCTTTGGCCCGTGGACCATTGGCGATGGCGTCGACAATGAGCTGATGGGTTACATCAGCAGCGCCAACATCGCCACTGGTTTCCATGCCGGCGAcccc > 4:20644/1‑149 (MQ=255) agaCGCGGTCATGCAAGCAGTGGATTTCAACTCGGACATGGGTGAGGGCTTTGGCCCGTGGACCATTGGCGATGACGTCGACAATGAGCTGATGGGTTACATCAGCAGCGCCAACATCGCCACTGGTTTCCATGCCGGCGACCCCGGCa > 5:243788/1‑149 (MQ=255) gcgGTCATGCAAGCAGTGGATTTCAACTCGGACATGGGTGAGGGCTTTGGCCCGTGGACCATTGGCGATGGCGTCGACAATGAGCTGATGGGTTACATCAGCAGCGCCAACATCGCCACTGGTTTCCATGCCGGCGACCCCGGCACCAt < 2:19760/149‑1 (MQ=255) atgcaagcAGTGGATTTCAACTCGGACATGGGTGAGGGCTTTGGCCCGTGGACCATTGGCGATGGCGTCGACAATGAGCTGATGGGTTACATCAGCAGCGCCAACATCGCCACTGGTTTCCATGCCGGCGACCCCGGCACCATGcgccg > 1:9858‑M2/9‑149 (MQ=255) cAGTGGATTTCAACTCGGACATGGGTGAGGGCTTTGGCCCGTGGACCATTGGCGATGGCGTCGACAATGAGc > 6:225169‑M2/2‑72 (MQ=255) cAGTGGATTTCAACTCGGACATGGGTGAGGGCTTTGGCCCGTGGACCATTGGCGATGGCGTCGACAATGAGc < 5:225169‑M2/71‑1 (MQ=255) cAGTGGATTTCAACTCGGACATGGGTGAGGGCTTTGGCCCGTGGACCATTGGCGATGGCGTCGACAATGAGCTGATGGGTTACATCAGCAGCGCCAACATCGCCACTGGTTTCCATGCCGGCGACCCCGGCACCATGCGCCGCACCGTc < 5:93368‑M2/148‑1 (MQ=255) | GCGCAGGGTGAGTGACACGGTAGGCTCCCGGGGTATCTGTTTTTCAGAAGGTACCCCATCTGTTTATAGATCTTCCCAAGGGGGTGCGGAGAATCTAACGTGGCTTGCATGCAGTCACAAGTGCCAGGAGACGCGGTCATGCAAGCAGTGGATTTCAACTCGGACATGGGTGAGGGCTTTGGCCCGTGGACCATTGGCGATGGCGTCGACAATGAGCTGATGGGTTACATCAGCAGCGCCAACATCGCCACTGGTTTCCATGCCGGCGACCCCGGCACCATGCGCCGCACCGTC > NC_002947/3320128‑3320421 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |