| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 3604024 = | 57 (0.970) | 3 (0.050) | 3/252 | NT | 5.0% | coding (630/900 nt) | PP_3179 | LysR family transcriptional regulator |
| ? | NC_002947 | 3604065 = | 58 (1.020) | coding (589/900 nt) | PP_3179 | LysR family transcriptional regulator | |||||
CGCTTGCTGCTTGACGAGCAGATCGTCATGGCGCTGCCCGCCAGCCATCCCATGGCGCGTTTCGAGGCCGTCGACTTGCGCGAGTTTGCCGATGAGGACTTCGTGTTCACCCCGCAAGCGCTGGGCGGGGGCTACCACGCACAGTTGGTTGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/3604176‑3604024‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttgcgGGGTGAACACGAAGTCCTCATCGGCAAACTCGCGCAAGTCGACGGCCTCGAAACGCGCCATGGGATGGCTGGCGGGCAGCGCCATGACGATCTGCTCGTCAAGCAGCAAGCGAGCCTCCAGGGTGCCGACCGGCAGCGGTAGCC > NC_002947/3604065‑3604208 CGCTTGCTGCTTGACGAGCAGATCGTCATGGCGCTGCCCGCCAGCCATCCCATGGCGCGTTTCGAGGCCGTCGACTTGCGCGAGTTTGCCGATGAGGACTTCGTGTTCACCCCGCAAGCGCTGGGCGGGGGCTACCACGCACAGTTGGT > 7:339581/1‑149 CCGCAAGCGCTGGGCGGGGGCTACCACGCACAGTTGGTTGCGGGGTGAACACGAAGTCCTCATCGGCAAACTCGCGCAAGTCGACGGCCTCGAAACGCGCCATGGGATG < 7:158561/109‑1 CCGCAAGCGCTGGGCGGGGGCTACCACGCACAGTTGGTTGCGGGGTGAACACGAAGTCCTCATCGGCAAACTCGCGCAAGTCGACGGCCTCGAAACGCGCCATGGGATG > 8:158561/1‑109 CGCAAGCGCTGGGCGGGGGCTACCACGCACAGTTGGTTGCGGGGTGAACACGAAGTCCTCATCGGCAAACTCGCGCAAGTCGACGGCCTCGAAACGCGCCATGGGATGGCTGGCGGGCAGCGCCATGACGATCTGCTCGTCAAGCAGC > 2:312441/1‑148 TTGCGGGGTGAACACGAAGTCCTCATCGGCAAACTCGCGCAAGTCGACGGCCTCGAAACGCGCCATGGGATGGCTGGCGGGCAGCGCCATGACGATCTGCTCGTCAAGCAGCAAGCGAGCCTCCAGGGTGCAGACCGGCAGCGGTAGCC > 6:179014/1‑149 CGCTTGCTGCTTGACGAGCAGATCGTCATGGCGCTGCCCGCCAGCCATCCCATGGCGCGTTTCGAGGCCGTCGACTTGCGCGAGTTTGCCGATGAGGACTTCGTGTTCACCCCGCAAGCGCTGGGCGGGGGCTACCACGCACAGTTGGTTGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/3604176‑3604024‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttgcgGGGTGAACACGAAGTCCTCATCGGCAAACTCGCGCAAGTCGACGGCCTCGAAACGCGCCATGGGATGGCTGGCGGGCAGCGCCATGACGATCTGCTCGTCAAGCAGCAAGCGAGCCTCCAGGGTGCCGACCGGCAGCGGTAGCC > NC_002947/3604065‑3604208 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |