New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3973637 =	48 (0.820)	4 (0.070)	4/246	NT	8.1%	coding (836/1326 nt)	PP_3503	sigma‑54 dependent transcriptional regulator
	?	NC_002947	3973689 =	46 (0.830)					coding (784/1326 nt)	PP_3503	sigma‑54 dependent transcriptional regulator

GGCCGATGGCGGCACATTGTTTCTTGATGAAATCGGCGACCTGCCGTTGGAATTGCAGGCCAACTTGCTGCGTTTCTTGCAGGAGAAGCACATCGAGCGGGTGGGTGGCAGCCAGCCCATACCGGTGGATGTACGGGTGCTGGCGGCCACCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/3973789‑3973637 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccacccaCCCGCTCGATGTGCTTCTCCTGCAAGAAACGCAGCAAGTTGGCCTGCAATTCCAACGGCAGGTCGCCGATTTCATCAAGAAACAATGTGCCGCCATCGGCCGCTTCGATACGCCCGGTCTTGCGCTGGTGAGCACCGGTAAAGGCG  >  NC_002947/3973689‑3973834                                                                                                                                                                                                                                                                                                             GGCCGATGGCGGCACATTGTTTCTTGATGAAATCGGCGACCTGCCGTTGGAATTGCAGGCCAACTTGCTGCGTTTCTTGCAGGAGAAGCACATCGAGCGGGTGGGTGGCAGCCAGCCCATACCGGTGGATGTACGGGTGCTGGCGGCCA                                                                                                                                                        >  7:98693/1‑149    CGATGGCGGCACATTGTTTCTTGATGAAATCGGCGACCTGCCGTTGGAATTGCAGGCCAACTTGCTGCGTTTCTTGCAGGAGAAGCACATCGAGCGGGTGGGTGGCAGCCAGCCCATACCGGTGGATGTACGGGTGCTGGCGGCCACCC                                                                                                                                                     <  4:291416/149‑1                                                                                            ATCGAGCGGGTGGGTGGCAGCCAGCCCATACCGGTGGATGTACGGGTGCTGGCGGCCACCCACCCGCTCGATGTGCTTCTCCTGCAAGAAACGCAGCAAGTTGGCCTGCAATTCCAACGGCAGGTCGCCGATTTCATCAAGAAACAATG                                                             >  5:207142/1‑149                                                                                                         GTGGCAGCCAGCCCATACCGGTGGATGTACGGGTGCTGGCGGCCACCCACCCGCTCGATGTGCTTCTCCTGCAAGAAACGCAGCAAGTTGGCCTGCAATTCCAACGGCAGGTCGCCGATTTCATCAAGAAACAATGTGCCGCC                                                      >  1:153810/1‑143                                                                                                         GTGGCAGCCAGCCCATACCGGTGGATGTACGGGTGCTGGCGGCCACCCACCCGCTCGATGTGCTTCTCCTGCAAGAAACGCAGCAAGTTGGCCTGCAATTCCAACGGCAGGTCGCCGATTTCATCAAGAAACAATGTGCCGCC                                                      <  2:153810/143‑1                                                                                                           GGCAGCCAGCCCATACCGGTGGATGTACGGGTGCTGGCGGCCACCCACCCGCTCGATGTGCTTCTCCTGCAAGAAACGCAGCAAGTTGGCCTGCAATTCCAACGGCAGGTCGCCGATTTCATCAAGAAACAATGTGCCGCCATCGGCCG                                              >  2:180948/1‑149                                                                                                                                                   CCACCCACCCGCTCGATGTGCTTCTCCTGCAAGAAACGCAGCAAGTTGGCCTGCAATTCCAACGGCAGGTCGCCGATTTCATCAAGAAACAATGTGCCGCCATCGGCCGCTTCGATACGCCCGGCCTTGCGCTGGTGAGCACCGGTA        >  7:173720/1‑147                                                                                                                                                     ACCCACCCGCTCGATGTGCTTCTCCTGCAAGAAACGCAGCAAGTTGGCCTGCAATTCCAACGGCAGGTCGCCGATTTCATCAAGAAACAATGTGCCGCCATCGGCCGCTTCGATACGCCCGGTCTTGCGCTGGTGAGCACCGGTAAAGG    >  1:367862/1‑149                                                                                                                                                       CCACCCGCTCGATGTGCTTCTCCTGCAAGAAACGCAGCAAGTTGGCCTGCAATTCCAACGGCAGGTCGCCGATTTCATCAAGAAACAATGTGCCGCCATCGGCCGCTTCGATACGCCCGGTCTTGCGCTGGTGAGCACCGGTAAAGGCG  <  2:170342/149‑1                                                                                                                                                                                                                                                                                                             GGCCGATGGCGGCACATTGTTTCTTGATGAAATCGGCGACCTGCCGTTGGAATTGCAGGCCAACTTGCTGCGTTTCTTGCAGGAGAAGCACATCGAGCGGGTGGGTGGCAGCCAGCCCATACCGGTGGATGTACGGGTGCTGGCGGCCACCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/3973789‑3973637 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccacccaCCCGCTCGATGTGCTTCTCCTGCAAGAAACGCAGCAAGTTGGCCTGCAATTCCAACGGCAGGTCGCCGATTTCATCAAGAAACAATGTGCCGCCATCGGCCGCTTCGATACGCCCGGTCTTGCGCTGGTGAGCACCGGTAAAGGCG  >  NC_002947/3973689‑3973834

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.