New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3973637 =	48 (0.820)	4 (0.070)	4/246	NT	8.1%	coding (836/1326 nt)	PP_3503	sigma‑54 dependent transcriptional regulator
	?	NC_002947	3973689 =	46 (0.830)					coding (784/1326 nt)	PP_3503	sigma‑54 dependent transcriptional regulator

GTAGAAATGGGCAAAATGGTTGGCCAGCATCGACAGGTCACCATGCCGGTCGCGCAACGGC‑GCGGTCACCACCTGCAAGACGTTCAGGCGGTAATACAGGTCTTCGCGGAAACGCCCTTGCTCGATGGCCCGCTCAAGGTCCACATGGGTGGCCGCCAGCACCCGTACATCCACCGGTATGGGCTGGCTGCCACCCACCCGCTCGATGTGCTTCTCCTGCAAGAAACGCAGCAAGTTGGCCTGCAATTCCAACGGCAGGTCGCCGATTTCATCAAGAAACAATGTGCCG  >  NC_002947/3973492‑3973780                                                                                                                                                   |                                                                                                                                                gTAGAAATGGGCAAAATGGTTGGCCAGCATCGACAGGTCACCATGCCGGTCGCGCAACGGC‑GCGGTCACCACCTGCAAGACGTTCAGGCGGTAATACAGGTCTTCGCGGAAACGCCCTTGCTCGATGGCCCGCTCAAGGTCCACATggg                                                                                                                                              >  1:155327/1‑149 (MQ=255) cgcctttaccggtgctcaccagcgcaagaccgggcgtatcgaagcggccgatggcggcacattgtttcttgatgaaatcggcgacctgccgttggaattgcaggccaacttgctgcgtttcttgcaggagaagcacatcgagcgggtgg                                                                                                                                               <  2:170342‑M1/3‑1 (MQ=255)  tAGAAATGGGCAAAATGGTTGGCCAGCATCGACAGGTCACCATGCCGGTCGCGCAACGGC‑GCGGTCACCACCTGCAAGACGTTCAGGCGGTAATACAGGTCTTCGCGGAAACGCCCTTGCTCGATGGCCCGGTCAAGGTCCACATgg                                                                                                                                               <  2:177202/147‑1 (MQ=255)   cctttaccggtgctcaccagcgcaagaccgggcgtatcgaagcggccgatggcggcacattgtttcttgatgaaatcggcgacctgccgttggaattgcaggccaacttgctgcgtttcttgcaggagaagcacatcgagcgggtgggt                                                                                                                                             >  1:367862‑M1/145‑149 (MQ=255)      aaTGGGCAAAATGGTTGGCCAGCATCGACAGGTCACCATGCCGGTCGCGCAACGGCAGCGGTCACCACCTGCAAGACGTTCAGGCGGTAATACAGGTCTTCGCGGAAACGCCCTTGCTCGATGGCCCGCTCAAGGTCCACATGGGTGgc                                                                                                                                          >  1:100927/1‑149 (MQ=255)       taccggtgctcaccagcgcaaggccgggcgtatcgaagcggccgatggcggcacattgtttcttgatgaaatcggcgacctgccgttggaattgcaggccaacttgctgcgtttcttgcaggagaagcacatcgagcgggtgggtgg                                                                                                                                           >  7:173720‑M1/141‑147 (MQ=255)            cAAAATGGTTGGCCAGCATCGACAGGTCACCATGCCGGTCGCGCAACGGC‑GCGGTCACCACCTGCAAGACGTTCAGGCGGTAATACAGGTCTTCGCGGAAACGCCCTTGCTCGATGGCCCGCTCAAGGTCCACATGGGTGGCCGCCAGc                                                                                                                                   <  1:356103/149‑1 (MQ=255)             aaaaTGGTTGGCCAGCATCGACAGGTCACCATGCCGGTCGCGCAACGGC‑GCGGTCACCACCTGCAAGACGTTCAGGCGGTAATACAGGTCTTCGCGGAAACGCCCTTGCTCGATGGCCCGCTCAAGGTCCACATGGGTGGCCGCCAGCa                                                                                                                                  >  6:302323/1‑149 (MQ=255)                    ttGGCCAGCATCGACAGGTCACCATGCCGGTCGCGCAACGGC‑GCGGTCACCACCTGCAAGACGTTCAGGCGGTAATACAGGTCTTCGCGGAAACGCCCTTGCTCGATGGCCCGCTCAAGGTCCACATGGGTGGCCGCCAGCACCCGTAc                                                                                                                           <  5:302323/149‑1 (MQ=255)                             aTCGACAGGTCACCATGCCGGTCGCGCAACGGC‑GCGGTCACCACCTGCAAGACGTTCAGGCGGTAATACAGGTCTTCGCGGAAACGCCCTTGCTCGATGGCCCGCTCAAGGTCCACATGGGTGGCCGCCAGCACCCGTACATCCACCgg                                                                                                                  >  8:266512/1‑149 (MQ=255)                             aTCGACAGGTCACCATGCCGGTCGCGCAACGGC‑GCGGTCACCACCTGCAAGACGTTCAGGCGGTAATACAGGTCTTCGCGGAAACGCCCTTGCTCGATGGCCCGCTCAAGGTCCACATGGGTGGCCGCCAGCACCCGTACATCCACCgg                                                                                                                  >  5:93913/1‑149 (MQ=255)                                 aCAGGTCACCATGCCGGTCGCGCAACGGC‑GCGGTCACCACCTGCAAGACGTTCAGGCGGTAATACAGGTCTTCGCGGAAACGCCCTTGCTCGATGGCCCGCTCAAGGTCCACATGGGTGGCCGCCAGCACCCGTACATCCACCGGTATg                                                                                                              >  2:362356/1‑149 (MQ=255)                                  cAGGTCACCATGCCGGTCGCGCAACGGC‑GCGGTCACCACCTGCAAGACGTTCAGGCGGTAATACAGGTCTTCGCGGAAACGCCCTTGCTCGATGGCCCGCTCAAGGTCCACATGGGTGGCCGCCAGCACGCGTACATCCACCGGTATgg                                                                                                             <  2:155327/149‑1 (MQ=255)                                  cAGGTCACCATGCCGGTCGCGCAACGGC‑GCGGTCACCACCTGCAAGACGTTCAGGCGGTAATACAGGTCTTCGCGGAAACGCCCTTGCTCGATGGCCCGCTCAAGGTCCACATGGGTGGCCGCCAGCACCCGTACATCCACCGGTATgg                                                                                                             <  8:144370/149‑1 (MQ=255)                                    ggTCACCATGCCGGTCGCGCAACGGC‑GCGGTCACCACCTGCAAGACGTTCAGGCGGTAATACAGGTCTTCGCGGAAACGCCCTTGCTCGATGGCCCGCTCAAGGTCCACATGGGTGGCCGCCAGCACCCGTACATCCACCGGTATGggc                                                                                                           <  6:93913/149‑1 (MQ=255)                                          cATGCCGGTCGCGCAACGGC‑GCGGTCACCACCTGCAAGACGTTCAGGCGGTAATACAGGTCTTCGCGGAAACGCCCTTGCTCGATGGCCCGCTCAAGGTCCACATGGGTGGCCGCCAGCACCCGTACATCCACCGGTATGGgctggctg                                                                                                     >  6:241981/1‑149 (MQ=255)                                          cATGCCGGTCGCGCAACGGC‑GCGGTCACCACCTGCAAGACGTTCAGGCGGTAATACAGGTCTTCGCGGAAACGCCCTTGCTCGATGGCCCGCTCAAGGTCCACATGGGTGGCCGCCAGCACCCGTACATCCACCGGTATGGgctggctg                                                                                                     >  4:363261/1‑149 (MQ=255)                                             cggccgatggcggcacattgtttcttgatgaaatcggcgacctgccgttggaattgcaggccaacttgctgcgtttcttgcaggagaagcacatcgagcgggTGGGTGGCCGCCAGCACCCGTACATCCACCGGTATGGGCTGGCTGcc                                                                                                   >  2:180948‑M1/103‑149 (MQ=255)                                              ccGGTCGCGCAACGGC‑GCGGTCACCACCTGCAAGACGTTCAGGCGGTAATACAGGTCTTCGCGGAAACGCCCTTGCTCGATGGCCCGCTCAAGGTCCACATGGGTGGCCGCCAGCACCCGTACATCCACCGGTATGGGCTGGCTGcca                                                                                                  <  8:206170/148‑1 (MQ=255)                                                     ggcggcacattgtttcttgatgaaatcggcgacctgccgttggaattgcaggccaacttgctgcgtttcttgcaggagaagcacatcgagcgggTGGGTGGCCGCCAGCACCCGTACATCCACCGGTATGGGCTGGCTGccac                                                                                                 >  1:153810‑M1/95‑143 (MQ=255)                                                     ggcggcacattgtttcttgatgaaatcggcgacctgccgttggaattgcaggccaacttgctgcgtttcttgcaggagaagcacatcgagcgggTGGGTGGCCGCCAGCACCCGTACATCCACCGGTATGGGCTGGCTGccac                                                                                                 <  2:153810‑M1/49‑1 (MQ=255)                                                            gc‑gcGGTCACCACCTGCAAGACGTTCAGGCGGTAATACAGGTCTTCGCGGAAACGCCCTTGCTCGATGGCCCGCTCAAGGTCCACATGGGTGGCCGCCAGCACCCGTACATCCACCGGTATGGGCTGGCTGCCACCCACCCGCTCGAtg                                                                                   >  6:24775/1‑149 (MQ=255)                                                            cattgtttcttgatgaaatcggcgacctgccgttggaattgcaggccaacttgctgcgtttcttgcaggagaagcacatcgagcgggTGGGTGGCCGCCAGCACCCGTACATCCACCGGTATGGGCTGGCTGCCACCCACCCGCTCGAt                                                                                    >  5:207142‑M1/88‑149 (MQ=255)                                                                cgGTCACCACCTGCAAGACGTTCAGGCGGTAATACAGGTCTTCGCGGAAACGCCCTTGCTCGATGGCCCGCTCAAGGTCCACATGGGTGGCCGCCAGCACCCGTACATCCACCGGTATGGGCTGGCTGCCACCCACCCGCTCGATGTGc                                                                                <  5:241981/149‑1 (MQ=255)                                                                 ggTCACCACCTGCAAGACGTTCAGGCGGTAATACAGGTCTTCGCGGAAACGCCCTTGCTCGATGGCCCGCTCAAGGTCCACATGGGTGGCCGCCAGCACCCGTACATCCACCGGTATGGGCTGGCTGcca                                                                                                  >  3:361284/1‑130 (MQ=255)                                                                 ggTCACCACCTGCAAGACGTTCAGGCGGTAATACAGGTCTTCGCGGAAACGCCCTTGCTCGATGGCCCGCTCAAGGTCCACATGGGTGGCCGCCAGCACCCGTACATCCACCGGTATGGGCTGGCTGcca                                                                                                  <  4:361284/130‑1 (MQ=255)                                                                     accaccTGCAAGACGTTCAGGCGGTAATACAGGTCTTCGCGGAAACGCCCTTGCTCGATGGCCCGCTCAAGGTCCACATGGGTGGCCGCCAGCACCCGTACATCCACCGGTATGGGCTGGCTGCCACCCCCCCGCTCGATGTGCTtctc                                                                           >  6:45196/1‑149 (MQ=255)                                                                       caccTGCAAGACGTTCAGGCGGTAATACAGGTCTTCGCGGAAACGCCCTTGCTCGATGGCCCGCTCAAGGTCCACATGGGTGGCCGCCAGCACCCGTACATCCACCGGTATGGGCTGGCTGCCACCCACCCGCTCGATGTGCTTCTCCt                                                                         <  3:214556/149‑1 (MQ=255)                                                                         ccTGCAAGACGTTCAGGCGGTAATACAGGTCTTCGCGGAAACGCCCTTGCTCGATGGCCCGCTCAAGGTCCACATGGGTGGCCGCCAGCACCCGTACATCCACCGGTATGGGCTGGCTGCCACCAACCCGATCGATGTGCTTCCCCTg                                                                        >  6:256926/1‑148 (MQ=255)                                                                            gCAAGACGTTCAGGCGGTAATACAGGTCTTCGCGGAAACGCCCTTGCTCGATGGCCCGCTCAAGGTCCACATGGGTGGCCGCCAGCACCCGTACATCCACCGGTATGGGCTGGCTGCCACCCACCCGCTCGATGTGCTTCTCCTGc                                                                       >  8:143698/1‑146 (MQ=255)                                                                                gACGTTCAGGCGGTAATACAGGTCTTCGCGGAAACGCCCTTGCTCGATGGCCCGCTCAAGGTCCACATGGGTGGCCGCCAGCACCCGTACATCCACCGGTATGGGCTGGCTGCCACCCACCCGCTCGATGTGCTTCTCCTGCAAGAAAc                                                                >  5:10588/1‑149 (MQ=255)                                                                                    ttCAGGCGGTAATACAGGTCTTCGCGGAAACGCCCTTGCTCGATGGCCCGCTCAAGGTCCACATGGGTGGCCGCCAGCACCCGTACATCCACCGGTATGGGCTGGCTGCCACCCACCCGCTCGATGTGCTTCTCCTGCAAGAAACgcag                                                            >  1:342048/1‑149 (MQ=255)                                                                                         gCGGTAATACAGGTCTTCGCGGAAACGCCCTTGCTCGATGGCCCGCTCAAGGTCCACATGGGTGGCCGCCAGCACCCGTACATCCACCGGTATGGGCTGGCTGCCACCCACCCGCTCGATGTGCTTCTCCTGCAAGAAACGCAGCAAGt                                                       >  5:375236/1‑149 (MQ=255)                                                                                         gCGGTAATACAGGTCTTCGCGGAAACGCCCTTGCTCGATGGCCCGCTCAAGGTCCACATGGGTGGCCGCCAGCACCCGTACATCCACCGGTATGGGCTGGCTGCCACCCACCCGCTCGATGTGCTTCTCCTGCAAGAAACGCAGCAAGt                                                       >  3:265125/1‑149 (MQ=255)                                                                                         gCGGTAATACAGGTCTTCGCGGAAACGCCCTTGCTCGATGGCCCGCTCAAGGTCCACATGGGTGGCCGCCAGCACCCGTACATCCACCGGTATGGGCTGGCTGCCACCCACCCGCTCGATGTGCTTCTCCTGCAAGAAACGCAGCAAGt                                                       >  6:279540/1‑149 (MQ=255)                                                                                          cGGTAATACAGGTCTTCGCGGAAACGCCCTTGCTCGATGGCCCGCTCAAGGTCCACATGGGTGGCCGCCAGCACCCGTACATCCACCGGTATGGGCTGGCTGCCACCCACCCGCTCGATGTGCTTCTCCTGCAAGAAACGCAGCAAGtt                                                      <  5:40902/149‑1 (MQ=255)                                                                                           ggTAATACAGGTCTTCGCGGAAACGACCTTGCTCGATGGCCCGCTCAAGGTCCACATGGGTGGCCGCCAGCACCCGTACATCCACCGGTATGGGCTGGCTGCCACCCACCCGCTCGATGTGCTTCTCCTGCAAGAAACGCAGCAAGTTg                                                     <  5:76192/149‑1 (MQ=255)                                                                                                     gTCTTCGCGGAAACGCCCTTGCTCGATGGCCCGCTCAAGGTCCACATGGGTGGCCGCCAGCACCCGTACATCCACCGGTATGGGCTGGCTGCCACCCACCCGCTCGATGTGCTTCTCCTGCAAGAAACGCAGCAAGTTGGCCTGCAAtt                                           <  5:279540/149‑1 (MQ=255)                                                                                                           gcgGAAACGCCCTTGCTCGATGGCCCGCTCAAGGTCCACATGGGTGGCCGCCAGCACCCGTACATCCACCGGTATGGGCTGGCTGCCACCCACCCGCTCGATGTGCTTCTCCTGCAAGAAACGCAGCAAGTTGGCCTGCAATTCCAAc                                      <  2:100927/148‑1 (MQ=255)                                                                                                            cgGAAACGCCCTTGCTCGATGGCCCGCTCAAGGTCCACATGGGTGGCCGCCAGCACCCGTACATCCACCGGTATGGGCTGGCTGCCACCCACCCGCTCGATGTGCTTCTCCTGCAAGAAACGCAGCAAGTTGGCCTGCAATTCCAACgg                                    <  3:363261/149‑1 (MQ=255)                                                                                                              gAAACGCCCTTGCTCGATGGCCCGCTCAAGGTCCACATGGGTGGCCGCCAGCACCCGTACATCCACCGGTATGGGCTGGCTGCCACCCACCCGCTCGATGTGCTTCTCCTGCAAGAAACGCAGCAAGTTGGCCTGCAATTCCAACGGCa                                  <  6:375236/149‑1 (MQ=255)                                                                                                                   gCCCTTGCTCGATGGCCCGCTCAAGGTCCACATGGGTGGCCGCCAGCACCCGTACATCCACCGGTATGGGCTGGCTGCCACCCACCCGCTCGATGTGCTTCTCCTGCAAGAAACGCAGCAAGTTGGCCTGCAATTCCAACGGCAGGTCg                             >  8:231162/1‑149 (MQ=255)                                                                                                                   gCCCTTGCTCGATGGCCCGCTCAAGGTCCACATGGGTGGCCACCAGCACCCGTACATCCACCGGTATGGGCTGGCTGCCACCCACCCGCTCGATGTGCTTCTCCTGCAAGAAACGCAGCAAGTTGGCCTGCAATTCCAACGGCAGGTCg                             <  8:17550/149‑1 (MQ=255)                                                                                                                       ttGCTCGATGGCCCGCTCAAGGTCCACATGGGTGGCCGCCAGCACCCGTACATCCACCGGTATGGGCTGGCTGCCACCCACCCGCTCGATGTGCTTCTCCTGCAAGAAACgcagc                                                           >  7:169539/1‑115 (MQ=255)                                                                                                                       ttGCTCGATGGCCCGCTCAAGGTCCACATGGGTGGCCGCCAGCACCCGTACATCCACCGGTATGGGCTGGCTGCCACCCACCCGCTCGATGTGCTTCTCCTGCAAGAAACgcagc                                                           <  8:169539/115‑1 (MQ=255)                                                                                                                       ttGCTCGATGG‑CCGCTCAAGGTCCACATGGGTGGCCGCCAGCACCCGTACATCCACCGGTATGGGCTGGCTGCCACCCACCCGCTCGATGTGCTTCTCCTGCAAGAAACGCAGCAAGTTGGCCTGCAATTCCAACGGCAGGTCTCCGAt                        >  3:209943/1‑149 (MQ=255)                                                                                                                        tGCTCGATGGCCCGCTCAAGGTCCACATGGGTGGCCGCCAGCACCCGTACATCCAc                                                                                                                     >  2:74904/1‑56 (MQ=255)                                                                                                                        tGCTCGATGGCCCGCTCAAGGTCCACATGGGTGGCCGCCAGCACCCGTACATCCAc                                                                                                                     <  1:74904/56‑1 (MQ=255)                                                                                                                             gATGGCCCGCTCAAGGTCCACATGGGTGGCCGCCAGCACCCGTACATCCACCGGTATGGGCTGGCTGCCACCCACCCGCTCGATGTGCTTCTCCTGCAAGAAACGCAGCAAGTTGGCCTGCAATTCCAACGGCAGGTCGCCGATTtcat                   <  5:24775/149‑1 (MQ=255)                                                                                                                                  cccGCTCAAGGTCCACATGGGTGGCCGCCAGCACCCGTACATCCACCGGTATGGGCTGGCTGCCACCCACCCGCTCGATGTGCTTCTCCTGCAAGAAACGCAGCAAGTTGGCCTGCAATTCCAACGGCAGGTCGCCGATTTCATCAAg               >  7:189974/1‑148 (MQ=255)                                                                                                                                  cccGCTCAAGGTCCACATGGGTGGCCGCCAGCACCCGTACATCCACCGGTATGGGCTGGCTGCCACCCACCCGCTCGATGTGCTTCTCCTGCAAGAAACGCAGCAAGATGGCCTGCAATTCCAACGGCAGGTCGCCGATTTCATCAAg               >  4:13374/1‑148 (MQ=255)                                                                                                                                         aaGGTCCACATGGGTGGCCGCCAGCACCCGTACATCCACCGGTATGGGCTGGCTGCCACCCACCCGCTCGATGTGCTTCTCCTGCAAGAAACGCAGCAAGTTGGCCTGCAATTCCAACGGCAGGTCGCCGATTTCATCAAGAAACaa         <  7:143698/147‑1 (MQ=255)                                                                                                                                         aaGGTCCACATGGGTGGCCGCCAGCACCCGTACATCCACCGGTATGGGCTGGCTGCCACCCACCCGCTCGATGTGCTTCTCCTGCAAGAAACGCAGCAAGTTGGCCTGCAATTCCAACGGCAGGTCGCCGATTTCATCAAGAAACCAtg       >  8:124648/1‑149 (MQ=255)                                                                                                                                           ggTCCACATGGGTGGCCGCCAGCACCCGTACATCCACCGGTATGGGCTGGCTGCCACCCACCCGCACGATGTGCTTCTCCTGCAAGAAACGCAGCAAGTTGGCCTGCAATTCCAACGGCAGGTCGCCGATTTCATCAAGAAACAAtgtg     >  1:295830/1‑149 (MQ=255)                                                                                                                                            gTCCACATGGGTGGCCGCCAGCACCCGTACATCCACCGGTATGGGCTGGCTGCCACCCACCCGCTCGATGTGCTTCTCCTGCAAGAAACGCAGCAAGTTGGCCTGCAATTCCAACGGCAGGTCGCCGAtt                       <  5:134548/130‑1 (MQ=255)                                                                                                                                            gTCCACATGGGTGGCCGCCAGCACCCGTACATCCACCGGTATGGGCTGGCTGCCACCCACCCGCTCGATGTGCTTCTCCTGCAAGAAACGCAGCAAGTTGGCCTGCAATTCCAACGGCAGGTCGCCGAtt                       >  6:134548/1‑130 (MQ=255)                                                                                                                                             tCCACATGGGTGGCCGCCAGCACCCGTACATCCACCGGTATGGGCTGGCTGCCACCCACCCGCTCGATGTGCTTCTCCTGCAAGAAACGCAGCAAGTTGGCCTGCAATTCCAACGGCAGGTCGCCGATTTCATCAAGAAACAATGTgcc   >  8:137305/1‑149 (MQ=255)                                                                                                                                              ccACATGGGTGGCCGCCAGCACCCGTACATCCACCGGTATGGGCTGGCTGCCACCCACCCGCTCGATGTGCTTCTCCTGCAAGAAACGCAGCAAGTTGGCCTGCAATTCCAACGGCAGGTCGCCGATTTCATCAAGAAACAATGTgccg  >  2:113377/1‑149 (MQ=255)                                                                                                                                                   |                                                                                                                                                GTAGAAATGGGCAAAATGGTTGGCCAGCATCGACAGGTCACCATGCCGGTCGCGCAACGGC‑GCGGTCACCACCTGCAAGACGTTCAGGCGGTAATACAGGTCTTCGCGGAAACGCCCTTGCTCGATGGCCCGCTCAAGGTCCACATGGGTGGCCGCCAGCACCCGTACATCCACCGGTATGGGCTGGCTGCCACCCACCCGCTCGATGTGCTTCTCCTGCAAGAAACGCAGCAAGTTGGCCTGCAATTCCAACGGCAGGTCGCCGATTTCATCAAGAAACAATGTGCCG  >  NC_002947/3973492‑3973780

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.