New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 = 406677346 (0.780)3 (0.050) 3/248 NT 6.3% coding (2291/3108 nt) mdtC multidrug transporter membrane protein
?NC_002947 = 4066800 46 (0.830)coding (2264/3108 nt) mdtC multidrug transporter membrane protein

CCCTCGGCGACGTCGAAGGCGATGTCTTCCGAGGCGAACTGGCCTTCGTGGCTGACCCGGTCGTTGGCCAGGCTGTTCTCGTAGTGGGCGATGGTCGACAGCGGCACCCGGGCGCCGTCGGCGGTGATCACCTGCACTTGCTCCAGCGTGCTCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4066620‑4066773
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtgctcgAGATCAACCCGAAATACGCCTGGGACCCGAGCACGCTGGAGCAAGTGCAGGTGATCACCGCCGACGGCGCCCGGGTGCCGCTGTCGACCATCGCCCACTACGAGAACAGCCTGGCCAACGACCGGGTCAGCCACGAAGGCCAGTTCGC  <  NC_002947/4066800‑4066653
                                                                                                                                                                                                                                                                                                              
CCCTCGGCGACGTCGAAGGCGATGTCTTCCGAGGCGAACTGGCCTTCGTGGCTGACCCGGTCGTTGGCCAGGCTGTTCTCGTAGTGGGCGATGGTCGACAGCGGCACCCGGGCGCCGTCGGCGGTGATCACCTGCACTTGCTCCAGCGT                                                                                                                                                           >  8:308047/1‑149
 CCTCGGCGACGTCGAAGGCGATGTCTTCCGAGGCGAACTGGCCTTCGTGGCTGACCCGGTCGTTGGCCAGGCTGTTCTCGTAGTGGGCGATGGTCGACAGCGGCACCCGGGCGCCGTCGGCGGTGATCACCTGCACTTGCTCCAGCGTG                                                                                                                                                          >  3:282848/1‑149
  CTCGGCGACGTCGAAGGCGATGTCTTCCGAGGCGAACTGGCCTTCGTGGCTGACCCGGTCGTTGGCCAGGCTGTTCTCGTAGTGGGCGATGGTCGACAGCGGCACCCGGGCGCCGTCGGCGGTGATCACCTGCACTTGCTCCAGCGTGC                                                                                                                                                         >  6:102207/1‑149
     GGCGACGTCGAAGGCGATGTCTTCCGAGGCGAACTGGCCTTCGTGGCTGACCCGGTCGTTGGCCAGGCTGTTCTCGTAGTGGGCGATGGTCGACAGCGGCACCCGGGCGCCGTCGGCGGTGATCACCTGCACTTGCTCCAGCGTGCTCG                                                                                                                                                      >  6:234860/1‑149
                                                                   CCAGGCTGTTCTCGTAGTGGGCGATGGTCGACAGCGGCACCCGGGCGCCGTCGGCGGTGATCACCTGCACTTGCTCCAGCGTGCTCGAGATCAACCCGAAATACGCCTGGGACCCGAGCACGCTGGA                                                                                                              >  8:273322/1‑127
                                                                                   GTGGGCGATGGTCGACAGCGGCACCCGGGCGCCGTCGGCGGTGATCACCTGCACTTGCTCCAGCGTGCTCGAGATCAACCCGAAATACGCCTGGGACCCGAGCACGCTG                                                                                                                <  5:196405/109‑1
                                                                                   GTGGGCGATGGTCGACAGCGGCACCCGGGCGCCGTCGGCGGTGATCACCTGCACTTGCTCCAGCGTGCTCGAGATCAACCCGAAATACGCCTGGGACCCGAGCACGCTG                                                                                                                >  6:196405/1‑109
                                                                                                                                                      CTCGAGATCAACCCGAAATACGCCTGGGACCCGAGCACGCTGGAGCAAGTGCAGGTGATCACCGCCGACGGCGCCCGGGTGCCGCTGTCGACCATCGCCCCCTACGAGACCAGCCTGGCCAACGACCGGGTCAGCCACGCAGGCGAGTT     >  4:282848/1‑149
                                                                                                                                                         GAGATCAACCCGAAATACGCCTGGGACCCGAGCACGCTGGAGCAAGTGCAGGTGATCACCGCCGACGGCGCCCGGGTGCCGCTGTCGACCATCGCCCACTACGAGAACAGCCTGGCCAACGACCGGGTCAGCCACGAAGGCCAGTTCGC  >  1:234228/1‑149
                                                                                                                                                         GAGATCAACCCGAAATACGCCTGGGACCCGAGCACGCTGGAGCAAGTGCAGGTGATCACCGCCGACGGCGCCCGGGTGCCGCTGGCGACCATCGCCCACTACGAGAACAGCCTGGCCAACGACCGGGTCAGCCACGAAGGCCAGTTCGC  <  1:295670/149‑1
                                                                                                                                                                                                                                                                                                              
CCCTCGGCGACGTCGAAGGCGATGTCTTCCGAGGCGAACTGGCCTTCGTGGCTGACCCGGTCGTTGGCCAGGCTGTTCTCGTAGTGGGCGATGGTCGACAGCGGCACCCGGGCGCCGTCGGCGGTGATCACCTGCACTTGCTCCAGCGTGCTCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4066620‑4066773
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtgctcgAGATCAACCCGAAATACGCCTGGGACCCGAGCACGCTGGAGCAAGTGCAGGTGATCACCGCCGACGGCGCCCGGGTGCCGCTGTCGACCATCGCCCACTACGAGAACAGCCTGGCCAACGACCGGGTCAGCCACGAAGGCCAGTTCGC  <  NC_002947/4066800‑4066653

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.