New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4066773	46 (0.780)	3 (0.050)	3/248	NT	6.3%	coding (2291/3108 nt)	mdtC	multidrug transporter membrane protein
	?	NC_002947	= 4066800	46 (0.830)					coding (2264/3108 nt)	mdtC	multidrug transporter membrane protein

GCGAACTGGCCTTCGTGGCTGACCCGGTCGTTGGCCAGGCTGTTCTCGTAGTGGGCGATGGTCGACAGCGGCACCCGGGCGCCGTCGGCGGTGATCACCTGCACTTGCTCCAGCGTGCTCGGGTCCCAGGCGTATTTCGGGTTGATCTCGAGCACCACCTGGTACTGGTTGAGGCTGTCATAGATGGTGGAGATCTGCCGCTGGCTGTAGGCGTTGTTCAGTACTGCGGTGACCATGTCCATGTCGATGCCCAGGCGCTTGGCCTGGTCACGGTCGACCACCAGCGTCAC  >  NC_002947/4066653‑4066942                                                                                                                                                    |                                                                                                                                               gCGAACTGGCCTTCGTGGCTGACCCGGTCGTTGGCCAGGCTGTTCTCGTAGTGGGCGATGGTCGCCAGCGGCACCCGGGCGCCGTCGGCGGTGATCACCTGCACTTGCTCCAGCGTGCTCGGGTCCCAGGCGTATTTCGGGTTGATCTc                                                                                                                                               <  1:295670‑M2/149‑2 (MQ=255) gCGAACTGGCCTTCGTGGCTGACCCGGTCGTTGGCCAGGCTGTTCTCGTAGTGGGCGATGGTCGACAGCGGCACCCGGGCGCCGTCGGCGGTGATCACCTGCACTTGCTCCAGCGTGCTCGGGTCCCAGGCGTATTTCGGGTTGATCTc                                                                                                                                               >  1:234228‑M2/1‑148 (MQ=255)    aaCTCGCCTGCGTGGCTGACCCGGTCGTTGGCCAGGCTGGTCTCGTAGGGGGCGATGGTCGACAGCGGCACCCGGGCGCCGTCGGCGGTGATCACCTGCACTTGCTCCAGCGTGCTCGGGTCCCAGGCGTATTTCGGGTTGATCTcgag                                                                                                                                            >  4:282848‑M2/1‑145 (MQ=255)          ccTTCGTGGCTGACCCGGTCGTTGGCCAGGCTGTTCTCGTAGTGGGCGATGGTCGACAGCGGCACCCGGGCGCCGTCGGCGGTGATCACCTGCACTTGCTCCAGCGTGCTCGGGTCCCAGGCGTATTTCGGGTTGATCTCGAGcaccac                                                                                                                                      >  5:68597/1‑149 (MQ=255)              cGTGGCTGACCCGGTCGTTGGCCAGGCTGTTCTCGTAGTGGGCGATGGTCGACAGCGGCACCCGGGCGCCGTCGGCGGTGATCACCTGCACTTGCTCCAGCGTGCTCGGGTCCCAGGCGTATTTCGGGTTGATCTCGAGCACCACCTg                                                                                                                                   <  7:291552/148‑1 (MQ=255)              cGTGGCTGACCCGGTCGTTGGCCAGGCTGTTCTCGTAGTGGGCGATGGTCGACAGCGGCACCCGGGCGCCGTCGGCGGTGATCACCTGCACTTGCTCCAGCGTGCTCGGGTCCCAGGCGTATTTCGGGTTGATCTCGAGCACCACCTg                                                                                                                                   >  8:291552/1‑148 (MQ=255)                   cTGACCCGGTCGTTGGCCAGGCTGTTCTCGTAGTGGGCGATGGTCGACAGCGGCACCCGGGCGCCGTCGGCGGTGATCACCTGCACTTGCTCCAGCGTGCTCGGGTCCCAGGCGTATTTCGGGTTGATCTCGAGCACCACCTGGTTCTg                                                                                                                             <  2:295670/149‑1 (MQ=255)                      aCCCGGTCGTTGGCCAGGCTGTTCTCGTAGTGGGCGATGGTCGACAGCGGCACCCGGGCGCCGTCGGCGGTGATCACCTGCACTTGCTCCAGCGTGCTCGGGTCCCAGGCGTATTTCGGGTTGATCTCGAGCACCACCTGGTACTGGt                                                                                                                           <  8:88431/148‑1 (MQ=255)                        ccGGTCGTTGGCCAGGCTGTTCTCGTAGTGGGCGATGGTCGACAGCGGCACCCGGGCGCCGTCGGCGGTGATCACCTGCACTTGCTCCAGCGTGCTCGGGTCCCAGGCGTATTTCGGGTTGATCTCGAGCACCACCTGGTACTGGtt                                                                                                                          >  7:344020/1‑147 (MQ=255)                        ccGGTCGTTGGCCAGGCTGTTCTCGTAGTGGGCGATGGTCGACAGCGGCACCCGGGCGCCGTCGGCGGTGATCACCTGCACTTGCTCCAGCGTGCTCGGGTCCCAGGCGTATTTCGGGTTGATCTCGAGCACCACCTGGTACTGGTTGa                                                                                                                        <  8:26792/149‑1 (MQ=255)                          ggTCGTTGGCCAGGCTGTTCTCGTAGTGGGCGATGGTCGACAGCGGCACCCGGGCGCCGTCGGCGGTGATCACCTGCACTTGCTCCAGCGTGCTCGGGTCCCAGGCGTATTTCGGGTTGATCTCGAGCACCACCTGGTACTGGTTGAgg                                                                                                                      <  4:269116/149‑1 (MQ=255)                                   ccAGGCTGTTCTCGTAGTGGGCGATGGTCGACAGCGGCACCCGGGCGCCGTCGGCGGTGATCACCTGCACTTGCTCCAGCGTGCTCGGGTCCCAGGCGTATTTCGGGTTGATCTCGAGCACCACCTGGTACTGGTTGAGGCTGTCa                                                                                                                >  4:346837/1‑146 (MQ=255)                                   ccAGGCTGTTCTCGTAGTGGGCGATGGTCGACAGCGGCACCCGGGCGCCGTCGGCGGTGATCACCTGCACTTGCTCCAGCGTGCTCGGGTCCCAGGCGTATTTCGGGTTGATCTCGAGCACCACCTGGTACTGGTTGAGGCTGTCATAg                                                                                                             <  3:346837/149‑1 (MQ=255)                                       gCTGTTCTCGTAGTGGGCGATGGTCGACAGCGGCACCCGGGCGCCGTCGGCGGTGATCACCTGCACTTGCTCCAGCGTGCTCGGGTCCCAGGCGTATTTCGGGTTGATCTCGAGCACCACCTGGTACTGGTTGAGGCTGTCATAGAtgg                                                                                                         >  2:46601/1‑149 (MQ=255)                                        cTGTTCTCGTAGTGGGCGATGGTCGACAGCGGCACCCGGGCGCCGTCGGCGGTGATCACCTGCACTTGCTCCAGCGTGCTCGGGTCCCAGGCGTATTTCGGGTTGATCTCGAGCACCACCTGGTACTGGTTGAGGCTGTCATAGAtggt                                                                                                        <  5:102207/149‑1 (MQ=255)                                          gTTCTCGTAGTGGGCGATGGTCGACAGCGGCACCCGGGCGCCGTCGGCGGTGATCACCTGCACTTGCTCCAGCGTGCTCGGGTCCCAGGCGTATTTCGGGTTGATCTCGAGCACCACCTGGTACTGGTTGAGGCTGTCATAGAtggtg                                                                                                       >  2:302871/1‑148 (MQ=255)                                           ttCTCGTAGTGGGCGATGGTCGACAGCGGCACCCGGGCGCCGTCGGCGGTGATCACCTGCACTTGCTCCAGCGTGCTCGGGTCCCAGGCGTATTTCGGGTTGATCTCGAGCACCACCTGGTACTGGTTGAGGCTGTCATAGAtggtg                                                                                                       >  3:297897/1‑147 (MQ=255)                                              tcGTAGTGGGCGATGGTCGACAGCGGCACCCGGGCGCCGTCGGCGGTGATCACCTGCACTTGCTCCAGCGTGCTCGGGTCCCAGGCGTATTTCGGGTTGATCTCGAGCACCACCTGGTACTGGTTGAGGCTGt                                                                                                                  >  8:26464/1‑133 (MQ=255)                                              tcGTAGTGGGCGATGGTCGACAGCGGCACCCGGGCGCCGTCGGCGGTGATCACCTGCACTTGCTCCAGCGTGCTCGGGTCCCAGGCGTATTTCGGGTTGATCTCGAGCACCACCTGGTACTGGTTGAGGCTGt                                                                                                                  >  8:32049/1‑133 (MQ=255)                                              tcGTAGTGGGCGATGGTCGACAGCGGCACCCGGGCGCCGTCGGCGGTGATCACCTGCACTTGCTCCAGCGTGCTCGGGTCCCAGGCGTATTTCGGGTTGATCTCGAGCACCACCTGGTACTGGTTGAGGCTGt                                                                                                                  <  7:26464/133‑1 (MQ=255)                                              tcGTAGTGGGCGATGGTCGACAGCGGCACCCGGGCGCCGTCGGCGGTGATCACCTGCACTTGCTCCAGCGTGCTCGGGTCCCAGGCGTATTTCGGGTTGATCTCGAGCACCACCTGGTACTGGTTGAGGCTGt                                                                                                                  <  7:32049/133‑1 (MQ=255)                                                       gCGATGGTCAACAGCGGCACCCGGGCGCCGTCGGCGGTGATCACCTGCACTTGCTCCAGCGTGCTCGGGTCCCAGGCGTATTTCGGGTTGATCTCGAGCACCACCTGGTACTGGTTGAGGCTGTCATAGATGGTGGAGATCTGCCgctg                                                                                         <  3:170238/149‑1 (MQ=255)                                                                gACAGCGGCACCCGGGCGCCGTCGGCGGTGATCACCTGCACTTGCTCCAGCGTGCTCGGGTCCCAGGCGTATTTCGGGTTGATCTCGAGCACCACCTGGTACTGGTTGAGGCTGTCATAGATGGTGGAGATCTGCCGCTGGCTGTAGGc                                                                                >  5:266775/1‑149 (MQ=255)                                                                 aCAGCGGCACCCGGGCGCCGTCGGCGGTGATCACCTGCACTTGCTCCAGCGTGCTCGGGTCCCAGGCGTATTTCGGGTTGATCTCGAGCACCACCTGGTACTGGTTGAGGCTGTCATAGATGGTGGAGATCTGCCgctgg                                                                                        >  1:172464/1‑140 (MQ=255)                                                                 aCAGCGGCACCCGGGCGCCGTCGGCGGTGATCACCTGCACTTGCTCCAGCGTGCTCGGGTCCCAGGCGTATTTCGGGTTGATCTCGAGCACCACCTGGTACTGGTTGAGGCTGTCATAGATGGTGGAGATCTGCCgctgg                                                                                        <  2:172464/140‑1 (MQ=255)                                                                 aCAGCGGCACCCGGGCGCCGTCGGCGGTGATCACCTGCACTTGCTCCAGCGTGCTCGGGTCCCAGGCGTATTTCGGGTTGATCTCGAGCACCACCTGGTACTGGTTGAGGCTGTCATAGATGGTGGAGATCTGCCGCTGGCTGTAGGCg                                                                               >  4:120752/1‑149 (MQ=255)                                                                 aCAGCGGCACCCGGGCGCCGTCGGCGGTGAACACCTGCACTTGCTCCAGCGTGCTCGGGTCCCAGGCGTATTTCGGGTTGATCTCGAGCACCACCTGGTACTGGTTGAGGCTGTCATAGAt                                                                                                           >  6:62892/1‑121 (MQ=255)                                                                 aCAGCGGCACCCGGGCGCCGTCGGCGGTGAACACCTGCACTTGCTCCAGCGTGCTCGGGTCCCAGGCGTATTTCGGGTTGATCTCGAGCACCACCTGGTACTGGTTGAGGCTGTCATAGAt                                                                                                           <  5:62892/121‑1 (MQ=255)                                                                    gCGGCACCCGGGCGCCGTCGGCGGTGATCACCTGCACTTGCTCCAGCGTGCTCGGGTCCCAGGCGTATTTCGGGTTGATCTCGAGCACCACCTGGTACTGGTTGAGGCTGTCATAGATGGTGGAGATCTGCCGCTGGCTGTAGGCgttg                                                                            <  1:46601/149‑1 (MQ=255)                                                                       gCACCCGGGCGCCGTCGGCGGTGATCACCTGCACTTGCTCCAGCGTGCTCGGGTCCCAGGCGTATTTCGGGTTGATCTCGAGCACCACCTGGTACTGGTTGAGGCTGTCATAGATGGTGGAGATCTGCCGCTGGCTGTAGGCgttgtt                                                                          >  7:11192/1‑148 (MQ=255)                                                                                           gTGATCACCTGCACTTGCTCCAGCGTGCTCGGGTCCCAGGCGTATTTCGGGTTGATCTCGAGCACCACCTGGTACTGGTTGAGGCTGTCATAGATGGTGGAGATCTGCCGCTGGCTGTAGGCGTTGTTCAGTACTGCGGTGAccatgtc                                                     <  1:117668/149‑1 (MQ=255)                                                                                             gATCACCTGCACTTGCTCCAGCGTGCTCGGGTCCCAGGCGTATTTCGGGTTGATCTCGAGCACCACCTGGTACTGGTTGAGGCTGTCATAGATGGTGGAGATCTGCCGCTGGCGGTAGGCGGTGTTCAGTACTGCGGTGAccttgtccc                                                   >  4:35201/1‑148 (MQ=255)                                                                                                 aCCTGCACTTGCTCCAGCGTGCTCGGGTCCCAGGCGTATTTCGGGTTGATCTCGAGCACCACCTGGTACTGGTTGAGGCTGTCATAGATGGTGGAGATCTGCCGCTGGCTGTAGGCGTTGTTCAGTACTGCGGTGAccatgtccatgt                                                <  6:68597/148‑1 (MQ=255)                                                                                                     gCACTTGCTCCAGCGTGCTCGGGTCCCAGGCGTATTTCGGGTTGATCTCGAGCACCACCTGGTACTGGTTGAGGCTGTCATAGATGGTGGAGATCTGCCGCTGGCTGTAGGCGTTGTTCTGTACTGCGGTGACCATGTCCATGTCGATg                                           >  2:153606/1‑149 (MQ=255)                                                                                                      cACTTGCTCCAGCGTGCTCGGGTCCCAGGCGTATTTCGGGTTGATCTCGAGCACCACCTGGTACTGGTTGAGGCTGTCATAGATGGTGGAGATCTGCCGCTGGCTGTAGGCGTTGTTCAGTACTGCGGTGACCATGTCCATGTCGAt                                            <  8:239561/147‑1 (MQ=255)                                                                                                      cACTTGCTCCAGCGTGCTCGGGTCCCAGGCGTATTTCGGGTTGATCTCGAGCACCACCTGGTACTGGTTGAGGCTGTCATAGATGGTGGAGATCTGCCGCTGGCTGTAGGCGTTGTTCAGTACTGCGGTGACCATGTCCATGTCGAt                                            >  7:235355/1‑147 (MQ=255)                                                                                                      cACTTGCTCCAGCGTGCTCGGGTCCCAGGCGTATTTCGGGTTGATCTCGAGCACCACCTGGTACTGGTTGAGGCTGTCATAGATGGTGGAGATCTGCCGCTGGCTGTAGGCGTTGTTCAGTACTGCGGTGACCATGTCCATGTCGAt                                            >  7:239561/1‑147 (MQ=255)                                                                                                      cACTTGCTCCAGCGTGCTCGGGTCCCAGGCGTATTTCGGGTTGATCTCGAGCACCACCTGGTACTGGTTGAGGCTGTCATAGATGGTGGAGATCTGCCGCTGGCTGTAGGCGTTGTTCAGTACTGCGGTGACCATGTCCATGTCGAt                                            <  8:235355/147‑1 (MQ=255)                                                                                                      cACTTGCTCCAGCGTGCTCGGGTCCCAGGCGTATTTCGGGTTGATCTCGAGCACCACCTGGTACTGGTTGAGGCTGTCATAGATGGTGGAGATCTGCCGCTGGCTGTAGGCGTTGTTCAGTACTGCGGTGACCATGTCCATGTCGAt                                            <  8:11192/147‑1 (MQ=255)                                                                                                      cACTTGCTCCAGCGTGCTCGGGTCCCAGGCGTATTTCGGGTTGATCTCGAGCACCACCTGGTACTGGTTGAGGCTGTCATAGATGGTGGAGATCTGCCGCTGGCTGTAGGCGTTGTTCAGTACTGCGGTGACCATGTCCATGTCGAt                                            <  2:201234/147‑1 (MQ=255)                                                                                                             tCCAGCGTGCTCGGGTCCCAGGCGTATTTCGGGTTGATCTcgagcacgctggagcaagtgcaggtgatcaccgccgacggcgcccgggtgccgctgtcgaccatcgcccactacgagaacagcctgg                                                         >  8:273322‑M2/1‑40 (MQ=255)                                                                                                               cAGCGTGCTCGGGTCCCAGGCGTATTTCGGGTTGATCTcgagcacgctggagcaagtgcaggtgatcaccgccgacggcgcccgggtgccgctgtcgaccatcgcccac                                                                         >  6:196405‑M2/1‑38 (MQ=255)                                                                                                               cAGCGTGCTCGGGTCCCAGGCGTATTTCGGGTTGATCTcgagcacgctggagcaagtgcaggtgatcaccgccgacggcgcccgggtgccgctgtcgaccatcgcccac                                                                         <  5:196405‑M2/109‑72 (MQ=255)                                                                                                                       tCGGGTCCCAGGCGTATTTCGGGTTGATCTCGAGCACCACCTGGTACTGGTTGAGGCTGTCATAGATGGTGGAGATCTGCCGCTGGCTGTAGGCGTTGTTCa                                                                        <  2:273063/102‑1 (MQ=255)                                                                                                                       tCGGGTCCCAGGCGTATTTCGGGTTGATCTCGAGCACCACCTGGTACTGGTTGAGGCTGTCATAGATGGTGGAGATCTGCCGCTGGCTGTAGGCGTTGTTCa                                                                        >  1:273063/1‑102 (MQ=255)                                                                                                                       tCGGGTCCCAGGCGTATTTCGGGTTGATCTCGAGCACCACCTGGTACTGGTTGAGGCTGTCATAGATGGTGGAGATCTGCCGCTGGATGTAGGCGTTGTTCAGTACTGCGGTGACCATGTCCATGTCGATGCCCAGGCGCTTGGCCTgg                         >  2:170684/1‑149 (MQ=255)                                                                                                                             cccAGGCGTATTTCGGGTTGATCTCGAGCACCACCTGGTACTGGTTGAGGCTGTCATAGATGGTGGAGATCTGCCGCTGGCTGTAGGCGTTGTTCCGTACTGCGGTGACCATGTCCATGTCGATGCCCAGGCGCTTGGCCTGGTCACgg                   <  1:153606/149‑1 (MQ=255)                                                                                                                              ccAGGCGTATTTCGGGTTGATCTCGAGCACCACCTGGTACTGGTTGAGGCTGTCATAGATGGTGGAGATCTGCCGCTGGCTGTAGGCGTTGTTCAGTACTGCGGTGACCATGTCCATGTCGATGCCCAg                                      >  3:179695/1‑129 (MQ=255)                                                                                                                               cAGGCGTATTTCGGGTTGATCTCGAGCACCACCTGGTACTGGTTGAGGCTGTCATAGATGGTGGAGATCTGCCGCTGGCTGTAGGCGTTGTTCAGTACTGCGGTGACCATGTCCATGTCGATGCCCAGGCGCTTGGCCTGGTCACGGTc                 >  3:107484/1‑149 (MQ=255)                                                                                                                               cAGGCGTATTTCGGGTTGATCTCGAGCACCACCTGGTACTGGTTGAGGCTGTCATAGATGGTGGAGATCTGCCGCTGGATGTAGGCGTTGTTCAGTACTGCGGTGACCATGTCCATGTCGATGCCCAGGCGCTTGGCCTGGTCACGGTc                 <  1:170684/149‑1 (MQ=255)                                                                                                                                   cGTATTTCGGGTTGATCTCGAGCACCACCTGGTACTGGTTGAGGCTGTCATAGATGGTGGAGATCTGCCGCTGGCTGTAGGCGTTGTTCAGTACTGCGGTGACCATGTCCATGTCGATGCCCAGGCGCTTGGCCTGGTCACGGTCGacc             <  3:120752/149‑1 (MQ=255)                                                                                                                                       tttCGGGTTGATCTCGAGCACCACCTGGTACTGGTTGAGGCTGTCATAGATGGTGGAGATCTGCCGCTGGCTGTAGGCGTTGTTCAGTACTGCGGTGACCATGTCCATGTCGATGCCCAGGCGCTTGGCCTGGTCACGGTCGaccac           >  5:172374/1‑147 (MQ=255)                                                                                                                                              ttGATCTCGAGCACCACCTGGTACTGGTTGAGGCTGTCATAGATGGTGGAGATCTGCCGCTGGCTGTAGGCGTTGTTCAGTACTGCGGTGACCATGTCCATGTCGATGCCCAGGCGCTTGGCCTGGTCACGGTCGACCACCAGCGTCAc  >  8:64642/1‑149 (MQ=255)                                                                                                                                                    |                                                                                                                                               GCGAACTGGCCTTCGTGGCTGACCCGGTCGTTGGCCAGGCTGTTCTCGTAGTGGGCGATGGTCGACAGCGGCACCCGGGCGCCGTCGGCGGTGATCACCTGCACTTGCTCCAGCGTGCTCGGGTCCCAGGCGTATTTCGGGTTGATCTCGAGCACCACCTGGTACTGGTTGAGGCTGTCATAGATGGTGGAGATCTGCCGCTGGCTGTAGGCGTTGTTCAGTACTGCGGTGACCATGTCCATGTCGATGCCCAGGCGCTTGGCCTGGTCACGGTCGACCACCAGCGTCAC  >  NC_002947/4066653‑4066942

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.