New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | 4067770 = | 50 (0.850) | 3 (0.050) | 3/252 | NT | 5.5% | coding (1294/3108 nt) | mdtC | multidrug transporter membrane protein |
? | NC_002947 | 4067810 = | 55 (0.970) | coding (1254/3108 nt) | mdtC | multidrug transporter membrane protein |
GTTTCTCGCTCAACAACCTGTCGCTGATGGCGCTGATCCTTGCCACCGGGCTGGTGGTGGACGATGCCATCGTGGTGCTGGAAAACATCTCCAGGCATATCGAGAACGGCCAGCCACCGATGAAGGCGGCCTTCCTGGGCGCCAAGGAGGTGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/4067922‑4067770 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggtggCTGGCCGTTCTCGATATGCCTGGAGATGTTTTCCAGCACCACGATGGCATCGTCCACCACCAGCCCGGTGGCAAGGATCAGCGCCATCAGCGACAGGTTGTTGAGCGAGAAACCGCACACGTACATGACTGCGAACGTGCCCACCAGC > NC_002947/4067810‑4067957 GTTTCTCGCTCAACAACCTGTCGCTGATGGCGCTGATCCTTGCCACCGGGCTGGTGGTGGACGATGCCATCGTGGTGCTGGAAAACATCTCCAGGCATATCGAGAACGGCCAGCCACCGATGAAGGCGGCCTTCCTGGGCGCCAAGGAG < 1:283994/149‑1 GTTTCTCGCTCAACAACCTGTCGCTGATGGCGCTGATCCTTGCCACCGGGCTGGTGGTGGACGATGCCATCGTGGTGCTGGAAAACATCTCCAGGCATATCGAGAACGGCCAGCCACCGATGAAGGCGGCCTTCCTGGGCGCCAAGGAG < 7:174255/149‑1 TCTCGCTCAACAACCTGTCGCTGATGGCGCTGATCCTTGCCACCGGGCTGGTGGTGGACGATGCCATCGTGGTGCTGGAAAACATCTCCAGGCATATCGAGAACGGCCAGCCACCGATGAAGGCGGCCTTCCTGGGCGCCAAGGAGGT < 3:255903/148‑1 CTCGCTCAACAACCTGTCGCTGATGGCGCTGATCCTTGCCACCGGGCTGGTGGTGGACGATGCCATCGTGGTGCTGGAAAACATCTCCAGGCATATCGAGAACGGCCAGCCACCGATGAAGGCGGCCTTCCTGGGCGCCAAGGAGGTG < 2:72088/148‑1 CTCGCTCAACAACCTGTCGCTGATGGCGCTGATCCTTGCCACCGGGCTGGTGGTGGACGATGCCATCGTGGTGCTGGAAAACATCTCCAGGCATATCGAGAACGGCCAGCCACCGATGAAGGCGGCCTTCCTGGGCGCCAAGGAGGTG < 6:225595/148‑1 GAACGGCCAGCCACCGATGAAGGCGGCCTTCCTGGGCGCCAAGGAGGTGGCTGGCCGTTCTCGATATGCCTGGAGATGTTTTCCAGCACCACGATGGCATCGTCCACCACCAGCCCGGTGGCAAGGATCAGCGCCATCAGCGACAGGTT > 8:346585/1‑149 CCAGCCACCGATGAAGGCGGCCTTCCTGGGCGCCAAGGAGGTGGCTGGCCGTTCTCGATATGCCTGGAGATGTTTTCCAGCACCACGATGGCATCGTCCACCACCAGCCCGGTGGCAAGGATCAGCGCCATCAGCGACAGGTTGTTGAG > 4:176868/1‑149 CCGATGAAGGCGGCCTTCCTGGGCGCCAAGGAGGTGGCTGGCCGTTCTCGATATGCCTGGAGATGTTTTCCAGCACCACGATGGCATCGTCCACCACCAGCCCGGTGGCAAGGATCAGCGCCATCAGCGACAGGTTGTTGAGCGAGAAA < 7:346585/149‑1 GTGGCTGGCCGTTCTCGATATGCCTGGAGATGTTTTCCAGCACCACGATGGCATCGTCCACCACCAGCCCGGTGGCAAGGATCAGCGCCATCAGCGACAGGTTGTTGAGCGAGAAACCGCACACGTACATGACTGCGAACGTGCCCAC > 2:168296/1‑148 GCTCGCCGGTCTCGATATTCCTGGAGATGTTTTCCAGCACCACGATGGCATCGTCCACCACCAGCCCGGTGGCAAGTATCAGCGCCATCAGCGACAGGTTGTTGAGCGAGAAACCGCACACGTACATGACTGCGAACGTGCCCACCAGC < 4:226175/149‑1 GTTTCTCGCTCAACAACCTGTCGCTGATGGCGCTGATCCTTGCCACCGGGCTGGTGGTGGACGATGCCATCGTGGTGCTGGAAAACATCTCCAGGCATATCGAGAACGGCCAGCCACCGATGAAGGCGGCCTTCCTGGGCGCCAAGGAGGTGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/4067922‑4067770 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggtggCTGGCCGTTCTCGATATGCCTGGAGATGTTTTCCAGCACCACGATGGCATCGTCCACCACCAGCCCGGTGGCAAGGATCAGCGCCATCAGCGACAGGTTGTTGAGCGAGAAACCGCACACGTACATGACTGCGAACGTGCCCACCAGC > NC_002947/4067810‑4067957 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |