New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | 4067770 = | 50 (0.850) | 3 (0.050) | 3/252 | NT | 5.5% | coding (1294/3108 nt) | mdtC | multidrug transporter membrane protein |
? | NC_002947 | 4067810 = | 55 (0.970) | coding (1254/3108 nt) | mdtC | multidrug transporter membrane protein |
AGGGTGAGCGACACCACCAGCGAGACGATGATCGCCGCCGCCAGGGTGATGGAAAACTCCTGGAACAGGTTGCGCACGATGCCGCCCATGAACAGGATGGAGACGAACACCGCCACCAGCGACACGTTCATCGACAGCAAGGTGAAACCCACCTCCTTGGCGCCCAGGAAGGCCGCCTTCATCGGTGGCTGGCCGTTCTCGATATGCCTGGAGATGTTTTCCAGCACCACGATGGCATCGTCCACCACCAGCCCGGTGGCAAGGATCAGCGCCATCAGCGACAGGTTGTTGAGC > NC_002947/4067622‑4067915 | gctggtgggcacgttcgcagtcatgtacgtgtgcggtttctcgctcaacaacctgtcgctgatggcgctgatacttgccaccgggctggtggtggacgatgccatcgtggtgctggaaaacatctccaggaatatcgagaccggcgagc < 4:226175‑M1/1‑1 (MQ=255) aGGGTGAGCGACACCACCAGCGAGACGATGATCGCCGCCGCCAGGGTGATGGAAAACTCCTGGAACAGGTTGCGCACGATGCCGCCCATGAACAGGATGGAGACGAACACCGCCACCAGCGACACGTTCATCGACAGCAAGGTGAAAcc < 5:351055/149‑1 (MQ=255) gggTGAGCGACACCACCAGCGAGACGATGATCGCCGCCGCCAGGGTGATGGAAAACTCCTGGAACAGGTTGCGCACGATGCCGCCCATGAACAGGATGGAGACGAACACCGCCACCAGCGACACGTTCATCGACAGCAAGGTGAAAcc > 4:233704/1‑148 (MQ=255) gTGAGCGACACCACCAGCGAGACGATGCTCGCCGCCGCCAGGGTGATGGAAAACTCCTGGAACAGGTTGCGCACGATGCCGCCCATGAACAGGATGGAGACGAACACCGCCACCAGCGACACGTTCATCGACAGCAAGGTGAAACCCAc < 2:312182/149‑1 (MQ=255) gtgggcacgttcgcagtcatgtacgtgtgcggtttctcgctcaacaacctgtcgctgatggcgctgatccttgccaccgggctggtggtggacgatgccatcgtggtgctggaaaacatctccaggcatatcgagaacggccagCCAc > 2:168296‑M1/145‑148 (MQ=255) acacCACCAGCGAGACGATGATCGCCGCCGCCAGGGTGATGGAAAACTCCTGGAACAGGTTGCGCACGATGCCGCCCATGAACAGGATGGAGACGAACACCGCCACCAGCGACACGTTCATCGACAGCAAGGTGAAACCCACCTCCTTg > 3:136642/1‑149 (MQ=255) caccaGCGAGACGATGATCGCCGCCGCCAGGGTGATGGAAAACTCCTGGAACAGGTTGCGCACGATGCCGCCCATGAACAGGATGGAGACGAACCCCGCCACCAGCGACACGTTCATCGACAGCAAGGTGAAACCCACCTCCTTGgcgc > 6:244787/1‑149 (MQ=255) caccaGCGAGACGATGATCGCCGCCGCCAGGGTGATGGAAAACTCCTGGAACAGGTTGCGCACGATGCCGCCCATGAACAGGATGGAGACGAACACCGCCACAAGCGACACGTTCATCGACAGCAAGGTGAAACCCACCTCCTTGgcgc > 3:363227/1‑149 (MQ=255) agaCGATGATCGCCGCCGCCAGGGTGATGGAAAACTCCTGGAACAGGTTGCGCACGATGCCGCCCATGAACAGGATGGAGACGAACACCGCCACCAGCGACACGTTCATCGACAGCAAGGTGAAACCCACCTCCTTGGCGCCCAGGAAg < 5:146404/149‑1 (MQ=255) agaCGATGATCGCCGCCGCCAGGGTGATGGAAAACTCCTGGAACAGGTTGCGCACGATGCCGCCCATGAACAGGATGGAGACGAACACCGCCACCAGCGACACGTTCATCGACAGCAAGGTGAAACCCACCTCCTTGGCGCCCAGGAAg > 3:106604/1‑149 (MQ=255) atCGCCGCCGCCAGGGTGATGGAAAACTCCTGGAACAGGTTGCGCACGATGCCGCCCATGAACAGGATGGAGACGAACACCGCCACCAGCGACACGTTCATCGACAGCAAGGTGAAACCCACCTCCTTGGCGccc < 7:157892/135‑1 (MQ=255) atCGCCGCCGCCAGGGTGATGGAAAACTCCTGGAACAGGTTGCGCACGATGCCGCCCATGAACAGGATGGAGACGAACACCGCCACCAGCGACACGTTCATCGACAGCAAGGTGAAACCCACCTCCTTGGCGccc > 8:157892/1‑135 (MQ=255) tttctcgctcaacaacctgtcgctgatggcgctgatccttgccaccgggctggtggtggacgatgccatcgtggtgctggaaaacatctccaggcatatcgagaacggccagCCACCTCCTTGGCGCCCAGGAAGGCCGCCTTCATCgg < 7:346585‑M1/37‑1 (MQ=255) ctcaacaacctgtcgctgatggcgctgatccttgccaccgggctggtggtggacgatgccatcgtggtgctggaaaacatctccaggcatatcgagaacggccagCCACCTCCTTGGCGCCCAGGAAGGCCGCCTTCATCGGtggctgg > 4:176868‑M1/106‑149 (MQ=255) gTGATGGAAAACTCCTGGAACAGGTTGCGCACGATGCCGCCCATGAACAGGATGGAGACGAACACCGCCACCAGCGACACGTTCATCGACAGCAAGGTGAAACCCAc > 6:87377/1‑107 (MQ=255) gTGATGGAAAACTCCTGGAACAGGTTGCGCACGATGCCGCCCATGAACAGGATGGAGACGAACACCGCCACCAGCGACACGTTCATCGACAGCAAGGTGAAACCCAc < 5:87377/107‑1 (MQ=255) tGATGGAAAACTCCTGGAACAGGTTGCGCACGATGCCGCCCATGAACAGGATGGAGACGAACACCGCCACCAGCGACACGTTCATCGACAGCAAGGTGAAACCCACCTCCTTGGCGCCCAGGAAGGCCGCCTTCATCGGTGGCTGGCCg > 3:236023/1‑149 (MQ=255) tGGAAAACTCCTGGAACAGGTTGCGCACGATGCCGCCCATGAACAGGATGGAGACGAACACCGCCACCAGCGACACGTTCATCGACAGCAAGGTGAAACCCACCTCCTTGGCTCCCAGGAAGGCCGACTTCATCGGCGGCTGGCCGGtc > 8:303955/1‑149 (MQ=255) aacctgtcgctgatggcgctgatccttgccaccgggctggtggtggacgatgccatcgtggtgctggaaaacatctccaggcatatcgagaacggccagCCACCTCCTTGGCGCCCAGGAAGGCCGCCTTCATCGGTGGCTGGCCGTtc > 8:346585‑M1/100‑149 (MQ=255) ggAAAACTCCTGGAACAGGTTGCGCACGATGCCGCCCATGAACAGGATGGAGACGAACACCGCCACCAGCGACACGTTCATCGACAGCAAGGTGAAACCCACCTCCTTGGCGCCCAGGAAGGCCGCCTTCATCGGTGGCTGGCCGTtct > 3:223690/1‑149 (MQ=255) gAAAACTCCTGGAACAGGTTGCGCACGATGCCGCCCATGAACAGGATGGAGACGAACACCGCCACCAGCGACACGTTCATCGACAGCAAGGTGAAACCCACCTCCTTGGCGCCCAGGAAGGCCGCCTTCATCGGTGGCTGGCCGtt < 5:31031/146‑1 (MQ=255) gAAAACTCCTGGAACAGGTTGCGCACGATGCCGCCCATGAACAGGATGGAGACGAACACCGCCACCAGCGACACGTTCATCGACAGCAAGGTGAAACCCACCTCCTTGGCGCCCAGGAAGGCCGCCTTCATCGGTGGCTGGCCGtt > 6:31031/1‑146 (MQ=255) aaaCTCCTGGAACAGGTTGCGCACGATGCCGCCCATGAACAGGATGGAGACGAACACCGCCACCAGCGACACGTTCATCGACAGCAAGGTGAAACCCACCTCCTTGGCGCCCAGGAAGGCCGCCTTCATCGGTGGCTGGCCGTTCTCGa < 3:233704/149‑1 (MQ=255) aCTCCTGGAACAGGTTGCGCACGATGCCGCCCATGAACAGGATGGAGACGAACACCGCCACCAGCGACACGTTCATCGACAGCAAGGTGAAACCCACCTCCTTGGCGCCCAGGAAGGCCGCCTTCATCGGTGGCTGGCCGTTCTCGata < 7:236286/149‑1 (MQ=255) cTCCTGGAACAGGTTGCGCACGATGCCGCCCATGAACAGGATGGAGACGAACACCGCCACCAGCGACACGTTCATCGACAGCAAGGTGAAACCCACCTCCTTGGCGCCCAGGAAGGCCGCCTTCATCGGTGGCTGGCCGTTCTCGatat < 4:106604/149‑1 (MQ=255) tCCTGGAACAGGTTGCGCACGATGCCGCCCATGAACAGGATGGAGACGAACACCGCCACCAGCGACAGGTTCATCGACAGCAAGGTGAAACCCACCTCCTTGGCGCCCAGGAAGGCCGCCTTCATCGGTGGCTGGCCGTTCTCGATATg > 6:2766/1‑149 (MQ=255) gAACAGGTTGCGCACGATGCCGCCCATGAACAGGATGGAGACGAACACCGCCACCAGCGACACGTTCATCGACAGCAAGGTGAAACCCACCTCCTTGGCGCCCAGGAAGGCCGCCTTCATCGGTGGCTGGCCGTTCTCGATATGCCTgg < 5:244787/149‑1 (MQ=255) aaCAGGTTGCGCACGATGCCGCCCATGAACAGGATGGAGACGAACACCGCCACCAGCGACACGTTCATCGACAGCAAGGTGAAACCCACCTCCTTGGCGCCCAGGAAGGCCGCCTTCATCGGTGGCTGGCCGTTCTCGATATGCCTGga < 2:228573/149‑1 (MQ=255) aaCAGGTTGCGCACGATGCCGCCCATGAACAGGATGGAGACGAACACCGCCACCAGCGACACGTTCATCGACAGCAAGGTGAAACCCACCTCCTTGGCGCCCAGGAAGGCCGCCTTCATCGGTGGCTGGCCGTTCTCGATATGCCTGga < 4:236023/149‑1 (MQ=255) aGGTTGCGCACGATGCCGCCCATGAACAGGATGGAGACGAACACCGCCACCAGCGACACGTTCATCGACAGCAAGGTGAAACCCACCTCCTTGGCGCCCAGGAAGGCCGCCTTCATCGGTGGCTGGCCGTTCTCGATATGCCTGGAGAt < 3:68962/149‑1 (MQ=255) cgcACGCTGCCGCCCATGAACAGGATGGAGACGAACACCGCCACCAGCGACACGTTCATCGACAGCAAGGTGAAACCCACCTCCTTGGCGCCCAGGAAGGCCGCCTTCATCGGTGGCTGGCCGTTCTCGATATGCCTGGAGATGTTTTc < 7:303955/149‑1 (MQ=255) gcACGATGCCGCCCATGAACAGGATGGAGACGAACACCGCCACCAGCGACACGTTCATCGACAGCAAGGTGAAACCCACCTCCTTGGCGCCCAGGAAGGCCGCCTTCATCGGTGGCTGGCCGTTCTCGATATGCCTGGAGATGTTTTc > 1:125242/1‑148 (MQ=255) cACGATGCCGCCCATGAACAGGATGGAGACGAACACCGCCACCAGCGACACGTTCATCGACAGCAAGGTGAAACCCACCTCCTTGGCGCCCAGGAAGGCCGCCTTCATCGGTGGCTGGCCGTTCTCGATATGCCTGGAGATGTTTTCCa < 2:125242/149‑1 (MQ=255) aCGATGCCGCCCATGAACAGGATGGAGACGAACACCGCCACCAGCGACACGTTCATCGACAGCAAGGTGAAACCCACCTCCTTGGCGCCCAGGAAGGCCGCCTTCATCGGTGGCTGGCCGTTCTCGATATGCCTGGAGATGTTTTCCAg > 2:277238/1‑149 (MQ=255) cgccCATGAACAGGATGGAGACGAACACCGCCACCAGCGACACGTTCATCGACAGCAAGGTGAAACCCACCTCCTTGGCGCCCAGGAAGGCCGCCTTCATCGGTGGCTGGCCGTTCTCGATATGCCTGGAGATGTTTTCCAGcaccac > 5:194556/1‑148 (MQ=255) gccCATGAACAGGATGGAGACGAACACCGCCACCAGCGACACGTTCATCGACAGCAAGGTGAAACCCACCTCCTTGGCGCCCAGGAAGGCCGCCTTCATCGGTGGCTGGCCGTTCTCGATATGCCTGGAGATGt < 5:4483/134‑1 (MQ=255) gccCATGAACAGGATGGAGACGAACACCGCCACCAGCGACACGTTCATCGACAGCAAGGTGAAACCCACCTCCTTGGCGCCCAGGAAGGCCGCCTTCATCGGTGGCTGGCCGTTCTCGATATGCCTGGAGATGt > 6:4483/1‑134 (MQ=255) gATGGAGACGAACACCGCCACCAGCGACACGTTCATCGACAGCAAGGTGAAACCCACCTCCTTGGCGCCCAGGAAGGCCGCCTTCATCGGTGGCTGGCCGTTCTCGATATGCCTGGAGATGTTTTCCAGCACCACGATGGCATCGTcca > 3:15169/1‑149 (MQ=255) gATGGAGACGAACACCGCCACCAGCGACACGTTCATCGACAGCAAGGTGAAACCCACCTCCTTGGCGCCCAGGAAGGCCGCCTTCATCGGTGGCTGGCCGTTCTCGATATGCCTGGAGATGTTTTCCAGCACCACGATGGCATCGTcca > 8:130485/1‑149 (MQ=255) tGGAGACGAACACCGCCACCAGCGACACGTTCATCGACAGCAAGGTGAAACCCACCTCCTTGGCGCCCAGGAAGGCCGCCTTCATCGGTGGCTGGCCGTTCTCGATATGCCTGGAGATGTTTTCCAGCACCACGATGGCATCGTccac > 2:206576/1‑148 (MQ=255) gaCGAACACCGCCACCAGCGACACGTTCATCGACAGCAAGGTGAAACCCACCTCCTTGGCGCCCAGGAAGGCCGCCTTCATCGGTGGCTGGCCGTTCTCGATATGCCTGGAGATGTTTTCCAGCACCACGATGGCATCGTccaccacca > 2:174257/1‑149 (MQ=255) cGAACACCGCCACCAGCGACACGTTCATCGACAGCAAGGTGAAACCCACCTCCTTGGCGCCCAGGAAGGCCGCCTTCATCGGTGGCTGGCCGTTCTCGATATGCCTGGAGATGTTTTCCAGCACCACGATGGCATCGTCCACCACCAGc < 7:141793/149‑1 (MQ=255) gAACACCGCCACCAGCGACACGTTCATCGACAGCAAGGTGAAACCCACCTCCTTGGCGCCCAGGAAGGCCGCCTTCATCGGTGGCTGGCCGTTCTCGATATGCCTGGAGATGTTTTCCAGCACCACGATGGCATCGTCCACCACCAGcc > 4:239623/1‑149 (MQ=255) gAACACCGCCACCAGCGACACGTTCATCGACAGCAAGGTGAAACCCACCTCCTTGGCGCCCAGGAAGGCCGCCTTCATCGGTGGCTGGCCGTTCTCGATATGCCTGGAGATGTTTTCCAGCACCACGATGGCATCGTCCACCACCAGc < 7:166223/148‑1 (MQ=255) gAACACCGCCACCAGCGACACGTTCATCGACAGCAAGGTGAAACCCACCTCCTTGGCGCCCAGGAAGGCCGCCTTCATCGGTGGCTGGCCGTTCTCGATATGCCTGGAGATGTTTTCCAGCACCACGATGGCATCGTCCACCACCAGc > 8:166223/1‑148 (MQ=255) acCGCCACCAGCGACACGTTCATCGACAGCAAGGTGAAACCCACCTCCTTGGCGCCCAGGAAGGCCGCCTTCATCGGTGGCTGGCCGTTCTCGATATGCCTGGAGATGTTTTCCAGCACCACGATGGCATCGTCCACCACCAGCCCGGt < 1:174257/149‑1 (MQ=255) ccaGCGACACGTTCATCGACAGCAAGGTGAAACCCACCTCCTTGGCGCCCAGGAAGGCCGCCTTCATCGGTGGCTGGCCGTTCTCGATATGCCTGGAGATGTTTTCCAGCACCACGATGGCATCGTCCACCACCAGCCCGGTGGCAAgg < 8:143463/149‑1 (MQ=255) ccaGCGACACGTTCATCGACAGCAAGGTGAAACCCACCTCCTTGGCGCCCAGGAAGGCCGCCTTCATCGGTGGCTGGCCGGTCTCGATATGCCTGGAGATGTTTTCCAGCACCACGATGGCATCGTCCACCACCAGCCCGGTGGCAAg > 6:313503/1‑148 (MQ=255) acacGTTCATCGACAGCAAGGTGAAACCCACCTCCTTGGCGCCCAGGAAGGCCGCCTTCATCGGTGGCTGGCCGTTCTCGATATGCCTGGAGATGTTTTCCAGCACCACGATGGCATCGTCCACCACCAGCCCGGTGGCAAGGATCAgc < 3:239623/149‑1 (MQ=255) acacGTTCATCGACACCAAGGTGCAACCCACCTCCTTGGCGCCCAGGCAGGCCGCCTTCATCGGTGGCTGGCCGTTCTCGATATGCCTGGAGATGTTTTCCAGCACCACGATGGCATCGTCCACCACCAGCCCGGTGGCAAGGATCAgc < 8:90271/149‑1 (MQ=255) cGTTCATCGACAGCAAGGTGAAACCCACCTCCTTGGCGCCCAGGAAGGCCGCCTTCATCGGTGGCTGGCCGTTCTCGATATGCCTGGAGATGTTTTCCAGCACCACGATGGCATCGTCCACCACCAGCCCGGAGGCAAGGATCAgcgc > 7:219119/1‑148 (MQ=255) gTTCATCGACAGCAAGGTGAAACCCACCTCCTTGGCGCCCAGGAAGGCCGCCTTCATCGGTGGCTGGCCGTTCTCGATATGCCTGGAGATGTTTTCCAGCACCACGATGGCATCGTCCACCACCAGCCCGGTGGCAAGGATCAGCGCCa > 6:128204/1‑149 (MQ=255) aTCGACAGCAAGGTGAAACCCACCTCCTTGGCGCCCAGGAAGGCCGCCTTCATCGGTGGCTGGCCGTTCTCGATATGCCTGGAGATGTTTTCCAGCACCACGATGGCATCGTCCACCACCAGCCCGGTGGCAAGGATCAGCGCCATCa < 4:223690/148‑1 (MQ=255) aTCGACAGCAAGGTGAAACCCACCTCCTTGGCGCCCAGGAAGGCCGCCTTCATCGGTGGCTGGCCGTTCTCGATATGCCTGGAGATGTTTTCCAGCACCACGATGGCATCGTCCACCACCAGCCCGGTGGCAAGGATCAGCGCCATCAg > 7:123324/1‑149 (MQ=255) aTCGACAGCAAGGTGAAACCCACCTCCTTGGCGCCCAGGAAAGCCGCCTTCATCGGTGGCTGGCCGTTCTCGATATGCCTGGAGATGTTTTCCAGCACCACGATGGCATCGTCCACCACCAGCCCGGTGGCAAGGATCAGCGCCAt > 4:876/1‑146 (MQ=255) aTCGACAGCAAGGTGAAACCCACCTCCTTGGCGCCCAGGAAAGCCGCCTTCATCGGTGGCTGGCCGTTCTCGATATGCCTGGAGATGTTTTCCAGCACCACGATGGCATCGTCCACCACCAGCCCGGTGGCAAGGATCAGCGCCATCa < 3:876/148‑1 (MQ=255) aCAGCAAGGTGAAACCCACCTCCTTGGCGCCCAGGAAGGCCGCCTTCATCGGTGGCTGGCCGTTCTCGATATGCCTGGAGATg > 4:66871/1‑83 (MQ=255) aCAGCAAGGTGAAACCCACCTCCTTGGCGCCCAGGAAGGCCGCCTTCATCGGTGGCTGGCCGTTCTCGATATGCCTGGAGATg < 3:66871/83‑1 (MQ=255) aCAGCAAGGTGAAACCCACCTCCTTGGCGCCCAGGAAGGCCGCCTTCATCGGTGGCTGGCCGTTCTCGATATGCCTGGAGATGTTTTCCAGCACCATGATGGCATCGTCCACCACCAGCCCGGTGGCAAGGATCAGCGCCATCAGCGAc < 1:277238/149‑1 (MQ=255) tGAAACCCACCTCCTTGGCGCCCAGGAAGGCCGCCTTCATCGGTGGCTGGCCGTTCTCGATATGCCTGGAGATGTTTTCCAGCACCACGATGGCATCGTCCACCACCAGCCCGGTGGCAAGGATCAGCGCCATCAGCGACAGgttgtt < 4:136642/148‑1 (MQ=255) gAAACCCACCTCCTTGGCGCCCAGGAAGGCCGCCTTCATCGGTGGCTGGCCGTTCTCGCTATGCCTGGAGATGTTTTCCAGCACCACGATGGCATCGTCCACCACCAGCCCGGTGGCAAGGATCAGCGCCATCAGCGTCAGgttgtt > 3:226175/1‑147 (MQ=255) aaaCCCACCTCCTTGGCGCCCAGGAAGGCCGCCTTCATCGGTGGCTGGCCGTTCTCGATATGCCTGGAGATGTTTTCCAGCACCACGATGGCATCGTCCACCACCAGCCCGGTGGCAAGGATCAGCGCCATCAGCGACAGGTTGTTGa < 4:15169/148‑1 (MQ=255) aaaCCCACCTCCTTGGCGCCCAGGAAGGCCGCCTTCATCGGTGGCTGGCCGTTCTCGATATGCCTGGAGATGTTTTCCAGCACCACGATGGCATCGTCCACCACCAGCCCGGTGGCAAGCATCAGCGCCATCAGCGACAGGTTGTTGa < 1:206576/148‑1 (MQ=255) aaCCCACCTCCTTGGCGCCCAGGAAGGCCGCCTTCATCGGTGGCTGGCCGTTCTCGATATGCCTGGAGATGTTTTCCAGCACCACGATGGCATCGTCCACCACCAGCCCGGTGGCAAGGATCAGCGCCATCAGCGACAGGTTGTTGAGc < 5:2766/149‑1 (MQ=255) | AGGGTGAGCGACACCACCAGCGAGACGATGATCGCCGCCGCCAGGGTGATGGAAAACTCCTGGAACAGGTTGCGCACGATGCCGCCCATGAACAGGATGGAGACGAACACCGCCACCAGCGACACGTTCATCGACAGCAAGGTGAAACCCACCTCCTTGGCGCCCAGGAAGGCCGCCTTCATCGGTGGCTGGCCGTTCTCGATATGCCTGGAGATGTTTTCCAGCACCACGATGGCATCGTCCACCACCAGCCCGGTGGCAAGGATCAGCGCCATCAGCGACAGGTTGTTGAGC > NC_002947/4067622‑4067915 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |