New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4727724 =	72 (1.220)	5 (0.090)	5/250	NT	7.3%	intergenic (‑343/+61)	brnQ/sucD	branched‑chain amino acid transporter/succinyl‑CoA synthetase subunit alpha
	?	NC_002947	4727773 =	59 (1.050)					intergenic (‑392/+12)	brnQ/sucD	branched‑chain amino acid transporter/succinyl‑CoA synthetase subunit alpha

CCTGCAGGACGCGGGTGTGAAAACCGTGCGTTCCCTGGCTGACATCGGCAAGGCCCTGGCCGAGCTGACTGGCTGGGAAGCCAAGAAGTAATACTGCTACACCCCCCACGCGCACAGAGGCCACCTTCGGGTGGCCTTTGTCGTATGTGGGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/4727875‑4727724 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtggggGGTGTAGCAGTATTACTTCTTGGCTTCCCAGCCAGTCAGCTCGGCCAGGGCCTTGCCGATGTCAGCCAGGGAACGCACGGTTTTCACACCCGCGTCCTGCAGGGCGGCGAACTTCTCGTCCGCAGTGCCCTTGCCGCCGGAGATGAT  >  NC_002947/4727773‑4727919                                                                                                                                                                                                                                                                                                             CCTGCAGGACGCGGGTGTGAAAACCGTGCGTTCCCTGGCTGACATCGGCAAGGCCCTGGCCGAGCTGACTGGCTGGGAAGCCAAGAAGTAATACTGCTACACCCCCCACGCGCACAGAGGCCACCTTCGGGTGGCCTTTGTCGTATGTG                                                                                                                                                        <  4:1216/149‑1   TGCAGGACGCGGGTGTGAAAACCGTGCGTTCCCTGGCTGACATCGGCAAGGCCCTGGCCGAGCTGACTGGCTGGGAAGCCAAGAAGTAATACTGCTACACCCCCCACGCGCACAGAGGCCACCTTCGGGTGGCCTTTGTCGTATGTGGG                                                                                                                                                      >  6:30263/1‑149                                                                                  CAAGAAGTAATACTGCTACACCCCCCACGCGCACAGAGGCCACCTTCGGGTGGCCTTTGTCGTATGTGGGGGGTGTAGCAGTATTACTTCTTGGCTTCCCAGCCAGTCAGCTCGGCCAGGGCCTTGCCGATGTCAGCCAGGGAACGCAC                                                                       >  1:214597/1‑149                                                                                           ATACTGCTACACCCCCCACGCGCACAGAGGCCACCTTCGGGTGGCCTTTGTCGTATGTGGGGGGTGTAGCAGTATTACTTCTTGGCTTCCCAGCCAGTCAGCTCGGCCAGGGCCTTGCCGATGTCAGCCAGGGAACGCACGGTTTTCAC                                                              <  2:214597/149‑1                                                                                                      CCCCCCACGCGCACAGAGGCCACCTTCGGGTGGCCTATGTCGTATGTGGGGGCTGTAGCAGTATTACTTCTTGGCTTCCCAGCCAGTCAGCTCGGCCAGGGCCTTGCCGATGTCAGCCAGGGAACGCACGGTTTTCACACCCGCGTCCT                                                   >  7:39995/1‑149                                                                                                                  ACAGAGGCCACCTTCGGGTGGCCTTTGT‑GCGCGTGGGGGGTGTAGCAGTATTACTTCTTGGCTTCCCAGCCAGTCAGCTCGGCCAGGGCCTTGCCGATGTCAGCCAGGGAACGCACGGTTTTCACACCCGCGTCCTGCAGGGCGGCGAA                                      >  6:212889/1‑149                                                                                                                    AGAGGCCACCTTCGGGTGGCCTTTGT‑GCGCGTGGGGGGTGTAGCAGTATTACTTCTTGGCTTCCCAGCCAGTCAGCTCGGCCAGGGCCTTGCCGATGTCAGCCAGGGAACGCACGGTTTTCACACCCGCGTCCCGCAGGGCGGCGAACT                                    >  8:83554/1‑149                                                                                                                                                    TGGGGGGTGTAGCAGTATTACTTCTTGGCTTCCCAGCCAGTCAGCTCGGCCAGGGCCTTGCCGATGTCAGCCAGGGAACGCACGGTTTTCACACCCGCGTCCTGCAGGGCGGCGAACTTCTCGTCCGCAGTGCCCTTGCCGCCGGAGAT     <  2:233067/149‑1                                                                                                                                                       GGGGTGTAGCAGTATTACTTCTTGGCTTCCCAGCCAGTCAGCTCGGCCAGGGCCTTGCCGATGTCAGCCAGGGAACGCACGGTTTTCACACCCGCGTCCTGCAGGGCGGCGAACTTCTCGTCCGCAGTGCCCTTGCCGCCGGAGATGAT  <  2:191443/149‑1                                                                                                                                                       GGGGTGTAGCAGTATTACTTCTTGGCTTCCCAGCCAGTCAGCTCGGCCAGGGCCTTGCCGATGTCAGCCAGGGAACGCACGGTTTTCACACCCGCGTCCTGCAGGGCGGCGAACTTCTCGTCCGCAGTGCCCTTGCCGCCGGAGATGAT  <  2:9282/149‑1                                                                                                                                                       GGGGTGTAGCAGTATTACTTCTTGGCTTCCCAGCCAGTCAGCTCGGCCAGGGCCTTGCCGATGTCAGCCAGGGAACGCACGGTTTTCACACCCGCGTCCTGCAGGGCGGCGAACTTCTCGTCCGCAGTGCCCTTGCCGCCGGAGATGAT  >  6:219608/1‑149                                                                                                                                                       GGGGTGTAGCAGTATTACTTCTTGGCTTCCCAGCCAGTCAGCTCGGCCAGGGCCTTGCCGATGTCAGCCAGGGAACGCACGGTTTTCACACCCGCGTCCCGCAGGGCGGCGAACTTCTCGTCCGCAGTGCCCTTGCCGCCGGAGATGAT  <  7:83554/149‑1                                                                                                                                                                                                                                                                                                             CCTGCAGGACGCGGGTGTGAAAACCGTGCGTTCCCTGGCTGACATCGGCAAGGCCCTGGCCGAGCTGACTGGCTGGGAAGCCAAGAAGTAATACTGCTACACCCCCCACGCGCACAGAGGCCACCTTCGGGTGGCCTTTGTCGTATGTGGGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/4727875‑4727724 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtggggGGTGTAGCAGTATTACTTCTTGGCTTCCCAGCCAGTCAGCTCGGCCAGGGCCTTGCCGATGTCAGCCAGGGAACGCACGGTTTTCACACCCGCGTCCTGCAGGGCGGCGAACTTCTCGTCCGCAGTGCCCTTGCCGCCGGAGATGAT  >  NC_002947/4727773‑4727919

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.