New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | 4738166 = | 55 (0.930) | 3 (0.050) | 3/250 | NT | 5.6% | coding (204/1773 nt) | sdhA | succinate dehydrogenase flavoprotein subunit |
? | NC_002947 | 4738204 = | 48 (0.850) | coding (166/1773 nt) | sdhA | succinate dehydrogenase flavoprotein subunit |
GCGCCGGCATGCGCGCAGCGCTGCAACTGGCTCAAGGCGGCCACAAGACTGCCGTAGTCACCAAGGTCTTCCCGACCCGTTCGCACACCGTATCCGCCCAGGGCGGCATCACCTGCGCCATCGCTTCGGCCGACCCGAACGACGACTGGCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/4738317‑4738166 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tggcgcAGGTGATGCCGCCCTGGGCGGATACGGTGTGCGAACGGGTCGGGAAGACCTTGGTGACTACGGCAGTCTTGTGGCCGCCTTGAGCCAGTTGCAGCGCTGCGCGCATGCCGGCGCCGCCGCCACCGATGATGATGGCGTCGAA > NC_002947/4738204‑4738345 GCGCCGGCATGCGCGCAGCGCTGCAACTGGCTCAAGGCGGCCACAAGACTGCCGTAGTCACCAAGGTCTTCCCGACCCGTTCGCACACCGTATCCGCCCAGGGCGGCATCACCTGCGCCATCGCTTCGGCCGACCCGAACGACGACTG < 7:107080/148‑1 GCGCCGGCATGCGCGCAGCGCTGCAACTGGCTCAAGGCGGCCACAAGACTGCCGTAGTCACCAAGGTCTTCCCGACCCGTTCGCACACCGTATCCGCCCAGGGCGGCATCACCTGCGCCATCGCTTCGGCCGACCCGAACGACGACTG > 8:107080/1‑148 CGCCGGCATGCGCGCAGCGATGCAACTGGCTCAAGGCGTCCACAAGACTGCCGTAGTCACCAAGGTCTTCCCGACCCGTTCGCACACCGTATCCGCCCAGGGCGGCATCACCTGCGCCATCGCTTCGGCCGACCCGAACGACGACTGGC < 8:263265/149‑1 GCCGGCATGCGCGCAGCGCTGCAACTGGCTCCAGGCGGCCACAAGACTGCCGTAGTCACCACGGTCTTCCCGCCCCGTTCGCCCACCGTATCCGCCCAGGGCGGCATCACCTGCGCCATCGCTTCGGCCGCCCCGAACGACGACTGGCG > 5:377169/1‑149 CTGCGCCATCGCTTCGGCCGACCCGAACGACGACTGGCGCAGGTGATGCCGCCCTGGGCGGATACGGTGTGCGAACGGGTCGGGAAGACCTTGGTGACTACGGCAGTCTTGTGGCCGCCTTGAGCCAGTTGCAGCGCT < 5:331154/138‑1 CTGCGCCATCGCTTCGGCCGACCCGAACGACGACTGGCGCAGGTGATGCCGCCCTGGGCGGATACGGTGTGCGAACGGGTCGGGAAGACCTTGGTGACTACGGCAGTCTTGTGGCCGCCTTGAGCCAGTTGCAGCGCT > 6:331154/1‑138 TGCGCCATCGCTTCGGCCGACCCGAACGACGACTGGCGCAGGTGATGCCGCCCTGGGCGGATACGGTGTGCGAACGGGTCGGGAAGACCTTGGTGACTACGGCAGTCTTGTGGCCGCCTTGAGCCAGTTGCAGCGCTGCGCGCATGCCG > 4:69046/1‑149 CTGGCGCAGGTGATGCCGCCCTGGGCGGATACGGTGTGCGAACGGGTCGGGAAGACCTTGGTGACTACGGCAGTCTTGTGGCCGCCTTGAGCCAGTTGCAGCGCTGCGCGCATGCCGGCGCCGCCGCCACCGATGATGATGGCGTCGAA < 3:69046/149‑1 GCGCCGGCATGCGCGCAGCGCTGCAACTGGCTCAAGGCGGCCACAAGACTGCCGTAGTCACCAAGGTCTTCCCGACCCGTTCGCACACCGTATCCGCCCAGGGCGGCATCACCTGCGCCATCGCTTCGGCCGACCCGAACGACGACTGGCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/4738317‑4738166 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tggcgcAGGTGATGCCGCCCTGGGCGGATACGGTGTGCGAACGGGTCGGGAAGACCTTGGTGACTACGGCAGTCTTGTGGCCGCCTTGAGCCAGTTGCAGCGCTGCGCGCATGCCGGCGCCGCCGCCACCGATGATGATGGCGTCGAA > NC_002947/4738204‑4738345 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |