New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4982403	54 (0.920)	3 (0.050)	3/250	NT	5.9%	coding (279/702 nt)	flgD	flagellar basal‑body rod modification protein FlgD
	?	NC_002947	= 4982461	45 (0.800)					coding (221/702 nt)	flgD	flagellar basal‑body rod modification protein FlgD

TCGTCCTTGTCGTAGATCCCCACCGAGGTGGAGGTACTGGACGACGTCAGGTTGACCGAGCCCTTCATGTCCTTGCTGGTATCGACCACAGCCTTGTCGGTCTGGACAATGACATTGCGCCCGACCAGCGAGGAGGCCTGCAAGGCCTGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4982254‑4982403 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcctggAAAGCATGCAGTCGCTGAACGACGCTGTGACCTACATCGCGGCCGGGCTGCAATCTTCCCAGGCCTTGCAGGCCTCCTCGCTGGTCGGGCGCAATGTCATTGTCCAGACCGACAAGGCTGTGGTCGATACCAGCAAGGACATGAAG  <  NC_002947/4982461‑4982316                                                                                                                                                                                                                                                                                                          TCGTCCTTGTCGTAGATCCCCACCGAGGTGGAGGTACTGGACGACGTCAGGTTGACCGAGCCCTTCATGTCCTTGCTGGTATCGACCACAGCCTTGTCGGTCTGGACAATGACATTGCGCCCGACCAGCGAGGAGGCCTGCAAGGCCTG                                                                                                                                                     >  2:157924/1‑149  CGTCCTTGTCGTAGATCCCCACCGAGGTGGAGGTACTGGACGACGTCAGGTTGACCGAGCCCTTCATGTCCTTGCTGGTATCGACCACAGCCTTGTCGGTCTGGACAATGACATTGGCCCCGACCAGCGAGGAGGCCTTGCAGGCCTc                                                                                                                                                     <  1:30379/148‑2  CGTCCTTGTCGTAGATCCCCACCGAGGTGGAGGTACTGGACGACGTCAGGTTGACCGAGCCCTTCATGTCCTTGCTGGTATCGACCACAGCCTTGTCGGTCTGGACAATGACATTGCGCCCGACCAGCGAGGAGGCCTGCAAGGCCTG                                                                                                                                                     <  7:117250/148‑1                                                   GTTGACCGAGCCCTTCATGTCCTTGCTGGTATCGACCACAGCCTTGTCGGTCTGGACAATGACATTGCGCCCGACCAGCGAGGAGGCCTGCAAGGCCTGGAAAGCATGCAGTCGCTGAACGACGCTGTGACCTACATCGCGGCCGGGCT                                                                                                   >  2:228438/1‑149                                                                    TGTCCTTGCTGGTATCGACCACAGCCTTGTCGGTCTGGACAATGACATTGCGCCCGACCAGCGAGGAGGCCTGCAAGGCCTGGAAAGCATGCAGTCGCTGAACGACGCTGTGACCTACATCGCGGCCGGGCTGCAATCTTCCCAGGCCT                                                                                  <  1:228438/149‑1                                                                        CTTGCTGGAATCGACCACAGCCTTGTCGGTCTGGACAATGACATTGCGCCCGACCAGCGAGGAGTCCTGCAAGGCCTGGAAAGCATGCAGTCGCTGAACGACGCTGTGACCTACATCGCGGCCGGGCTGCAATCTTCCCAGGCCTTGCA                                                                              <  5:8216/149‑1                                                                                                                                                   CTGGAAAGCATGCAGTCGCTGAACGACGCTGTGACCTACATCGCGGCCGGGCTGCAATCTTCCCAGGCCTTGCAGGCCTCCTCGCTGGTCGGGCGCAATGTCATTGTCCAGACCGACAAGGCTGTGGTCGATACCA                >  3:70674/1‑136                                                                                                                                                   CTGGAAAGCATGCAGTCGCTGAACGACGCTGTGACCTACATCGCGGCCGGGCTGCAATCTTCCCAGGCCTTGCAGGCCTCCTCGCTGGTCGGGCGCAATGTCATTGTCCAGACCGACAAGGCTGTGGTCGATACCA                <  4:70674/136‑1                                                                                                                                                    TGGAAAGCATGCAGTCGCTGAACGACGCTGTGACCTACATCGCGGCCGGGCTGCAATCTTCCCAGGCCTTGCAGGCCTCCTCGCTGGTCGGGCGCAATGTCATTGTCCAGACCGACAAGGCTGTGGTCGATACCAGCAAGGACATGAAG  >  1:157924/1‑149                                                                                                                                                    TGGAAAGCATGCAGTCGCTGAACGACGCTGTGACCTACATCGCGGCCGGGCTGCAATCTTCCCAGGCCTTGCAGGCCTCCTCGCTGGTCGGGCGCAATGTCATTGTCCAGACCGACAAGGCTGTGGTCGATACCAGCAAGGACATGAAG  >  2:172640/1‑149                                                                                                                                                                                                                                                                                                          TCGTCCTTGTCGTAGATCCCCACCGAGGTGGAGGTACTGGACGACGTCAGGTTGACCGAGCCCTTCATGTCCTTGCTGGTATCGACCACAGCCTTGTCGGTCTGGACAATGACATTGCGCCCGACCAGCGAGGAGGCCTGCAAGGCCTGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4982254‑4982403 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcctggAAAGCATGCAGTCGCTGAACGACGCTGTGACCTACATCGCGGCCGGGCTGCAATCTTCCCAGGCCTTGCAGGCCTCCTCGCTGGTCGGGCGCAATGTCATTGTCCAGACCGACAAGGCTGTGGTCGATACCAGCAAGGACATGAAG  <  NC_002947/4982461‑4982316

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.