New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4982403	54 (0.920)	3 (0.050)	3/250	NT	5.9%	coding (279/702 nt)	flgD	flagellar basal‑body rod modification protein FlgD
	?	NC_002947	= 4982461	45 (0.800)					coding (221/702 nt)	flgD	flagellar basal‑body rod modification protein FlgD

TCCTTGTCGTAGATCCCCACCGAGGTGGAGGTACTGGACGACGTCAGGTTGACCGAGCC‑CTTCATGTCCTTGCTGGTATCGACCACAGCCTTGTCGGTCT‑GGACAATGACATTGCGCCCGACCAGCGAGGAGGCCTGCAAGGCCTGGGAAGATTGCAGCCCGG‑CCGCGATGTAGGTCACAGCGTCGTTCAGCGACTGCATGCTTTCCAGGCTGCTGAACTGCGCCAACTGGGCCACGAACTCGCCGTTTTCCTGCGGGTCGAGCGGGTTCTGGTTCTGCATCTGGGTGACCAGC  >  NC_002947/4982257‑4982550                                                                                                                                                     |                                                                                                                                                     tcCTTGTCGTAGATCCCCACCGAGGTGGAGGTACTGGACGACGTCAGGTTGACCGAGCC‑CTTCATGTCCTTGCTGGTATCGACCACAGCCTTGTCGGTCT‑GGACAATGACATTGCGCCCGACCAGCGAGGAGGCCTGCAAGGCCTggg                                                                                                                                                     >  1:60206/1‑148 (MQ=255)       tCGTAGATCCCCACCGAGGTGGAGGTACTGGACGACGTCAGGTTGACCGAGCC‑CTTCATGTCCTTGCTGGTATCGACCACAGCCTTGTCGGTCT‑GGACAATGACATTGCGCCCGACCAGCGAGGAGGCCTGCAAGGCCTGGGAAGATTg                                                                                                                                              >  6:254647/1‑149 (MQ=255)         gTAGATCCCCACCGAGGTGGAGGTACTGGACGACGTCAGGTTGACCGAGCCGCTTCATGTCCTTGCTGGTATCGACCACAGCCTTGTCGGTCT‑GGACAATGACATTGCGCCCGACCAGCGAGGAGGCCTGCAAGGCCTGGGAAGATTg                                                                                                                                              >  1:276143/1‑148 (MQ=255)         gTAGATCCCCACCGAGGTGGAGGTACTGGACGACGTCAGGTTGACCGAGCC‑CTTCATGTCCTTGCTGGTATCGACCACAGCCTTGTCGGTCT‑GGACAATGACATTGCGCCCGACCAGCGAGGAGGCCTGCAAGGCCTGGGAAGATTGCa                                                                                                                                            <  2:248757/149‑1 (MQ=255)         gTAGATCCCCACCGAGGTGGAGGTACTGGACGACGTCAGGTTGACCGAGCC‑CTTCATGTCCTAGCTGGAATCGACCACAGCCTTGTCGGTCT‑GGACAATGACATTGCGCCCGACCAGCGAGGAGTCCTGCAAGGCCTGCCAAGATTg                                                                                                                                              >  3:56538/1‑147 (MQ=255)           aGATCCCCACCGAGGTGGAGGTACTGGACGACGTCAGGTTGACCGAGCC‑CTTCATGTCCTTGCTGGTATCGACCACAGCCTTGTCGGTCT‑GGACAATGACATTGCGCCCGACCAGCGAGGAGGCCTGCAAGGCCTGGGAAGATTGCAGc                                                                                                                                          >  3:111551/1‑149 (MQ=255)                 ccACCGAGGTGGAGGTACTGGACGACGTCAGGTTGACCGAGCC‑CTTCATGTCCTTGCTGGTATCGACCACAGCCTTGTCGGTCT‑GGACAATGACATTGCGCCCGACCAGCGAGGAGGCCTGCAAGGCCTGGGAAGATTGCAGCCCGG‑cc                                                                                                                                   >  1:27148/1‑149 (MQ=255)                 ccACCGAGGTGGAGGTACTGGACGACGTCAGGTTGACCGAGCC‑CTTAATGTCCTTGCTGGTATCGACCACAGCCTTGTCGGTCT‑GGACAATGACATTGCGCCCGACCAGCGAGGAGGCCTGCAAGGCCTGGGAAGATTGCAGCCCGG‑cc                                                                                                                                   <  8:304039/149‑1 (MQ=255)                    ccGAGGTGGAGGTACTGGACGACGTCAGGTTGACCGAGCC‑CTTCATGTCCTTGCTGGTATCGACCACAGCCTTGTCGGTCT‑GGACAATGACATTGCGCCCGACCAGCGAGGAGGCCTGCAAGGCCTGGGAAGATTGCAGCCCGG‑Ccgcg                                                                                                                                <  2:189116/149‑1 (MQ=255)                      gAGGTGGAGGTACTGGACGACGTCAGGTTGACCGAGCC‑CTTCATGTCCTTGCTGGTATCGACCACAGCCTTGTCGGTCT‑GGACAATGACATTGCGCCCGACCAGCGAGGAGGCCTGCAAGGCCTGGGAAGATTGCAGCCCGG‑CCGCGAt                                                                                                                              <  5:254647/149‑1 (MQ=255)                            gAGGTACTGGACGACGTCAGGTTGACCGAGCC‑CTTCATGTCCTTGCTGGTATCGACCACAGCCTTGTCGGTCT‑GGACAATGACATTGCGCCCGACCAGCGAGGAGGCCTGCAAGGCCTGGGAAGATTGCAGccc                                                                                                                                        <  6:6578/134‑1 (MQ=255)                            gAGGTACTGGACGACGTCAGGTTGACCGAGCC‑CTTCATGTCCTTGCTGGTATCGACCACAGCCTTGTCGGTCT‑GGACAATGACATTGCGCCCGACCAGCGAGGAGGCCTGCAAGGCCTGGGAAGATTGCAGccc                                                                                                                                        >  5:6578/1‑134 (MQ=255)                            gAGGTACTGGACGACGTCAGGTTGACCGAGCC‑CTTCATGTCCTTGCTGGTATCGACCACAGCCTTGTCGGTCT‑GGACAATGACATTGCGCCCGACCAGCGAGGAGGCCTGCAAGGCCTGGGAAGATTGCAGCCCGG‑CCGCGATGTAGGt                                                                                                                        <  2:308593/149‑1 (MQ=255)                                tACTGGACGACGTCAGGTTGACCGAGCC‑CTTCATGTCCTTGCTGGTATCGACCACAGCCTTGTCGGTCT‑GGACAATGACATTGCGCCCGACCAGCGAGGAGGCCTGCAAGGCCTGGGAAGATTGCAGCCCGG‑CCGCGATGTAGGTcaca                                                                                                                    <  7:195717/149‑1 (MQ=255)                                     gacgacGTCAGGTTGACCGAGCC‑CTTCATGTCATTGCTGGTATCGACCACAGCCTTGTCGGTCT‑GGACAATGACATTGCGCCCGACCAGCGAGGAGGCCTGCAAGGACTGGGAAGATTGCAGCCCGG‑CCGCGATGTAGGTCACAGcgt                                                                                                                <  6:352690/148‑1 (MQ=255)                                          cgTCAGGTTGACCGAGCC‑CTTCATGTCCTTGCTGGTATCGACCACAGCCTTGTCGGTCT‑GGACAATGACATTGCGCCCGACCAGCGAGGAGGCCTGCAAGGCCTGGGAAGATTGCAGCCCGG‑CCGCGATGTAGGTCACAGCGTCGTTCa                                                                                                          <  2:276143/149‑1 (MQ=255)                                            tCAGGTTGACCGAGCC‑CTTCATGTCCTTGCTGGTATCGACCACAGCCTTGTCGGTCT‑GGACAATGACATTGCGCCCGACCAGCGAGGAGGCCTGCAAGGCCTGGGAAGATTGCAGCCCGG‑CCGCGATGTAGGTCACAGCGTCGTTCAGc                                                                                                        <  4:55391/149‑1 (MQ=255)                                                gTTGACCGAGCC‑CTTCATGTCCTTGCTGGTATCGACCACAGCCTTGTCGGTCT‑GGACAATGACATTGCGCCCGACCAGCGAGGAGGCCTGCAAGGCCTGGaaagcatgcagtcgctgaacgacgctgtgacctacatcgcggccgggct                                                                                                     >  2:228438‑M1/1‑100 (MQ=255)                                                gTTGACCGAGCC‑CTTCATGTCCTTGCTGGTATCGACCACAGCCTTGTCGGTCT‑GGACAATGACATTGCGCCCGACCAGCGAGGAGGCCTGCAAGGCCTGGGAAGATTGCAGCCCGG‑CCGCGATGTAGGTCACAGCGTCGTTCAGCGACt                                                                                                    <  4:43690/149‑1 (MQ=255)                                                        aGCC‑CTTCATGTCCTTGCTGGTATCGACCACAGCCTTGTCGGTCTGGGACAATGACATTGCGCCCGACCAGCGAGGAGGCCTGCAAGGCCTGGGAAGATTGCAGCCCGG‑CCGCGATGTAGGTCACAGcgtcgt                                                                                                             >  1:76739/1‑133 (MQ=255)                                                        aGCC‑CTTCATGTCCTTGCTGGTATCGACCACAGCCTTGTCGGTCT‑GGACAATGACATTGCGCCCGACCAGCGAGGAGGCCTGCAAGGCCTGGGAAGATTGCAGCCCGG‑CCGCGATGTAGGTCACAGcgtcgt                                                                                                             <  2:76739/132‑1 (MQ=255)                                                             cTTCATGTCCTTGCTGGTATCGACCACAGCCTTGTCGGTCT‑GGACAATGACATTGCGCCCGACCAGCGAGGAGGCCTGCAAGGCCTGGGAAGATTGCAGCCCGG‑CCGCGATGTAGGTCACAGCGTCGTTCAGCGACTGCATGCTTTcca                                                                                        >  2:172640‑M2/1‑146 (MQ=255)                                                             cTTCATGTCCTTGCTGGTATCGACCACAGCCTTGTCGGTCT‑GGACAATGACATTGCGCCCGACCAGCGAGGAGGCCTGCAAGGCCTGGGAAGATTGCAGCCCGG‑CCGCGATGTAGGTCACAGCGTCGTTCAGCGACTGCATGCTTTcca                                                                                        >  1:157924‑M2/1‑146 (MQ=255)                                                                  tGTCCTTGCTGGTATCGACCACAGCCTTGTCGGTCT‑GGACAATGACATTGCGCCCGACCAGCGAGGAGGCCTGCAAGGCCTGGaaagcatgcagtcgctgaacgacgctgtgacctacatcgcggccgggctgcaatcttcccaggcct                                                                                    <  1:228438‑M1/149‑67 (MQ=255)                                                                   gTCCTTGCTGGTATCGACCACAGCCTTGTCGGTCT‑GGACAATGACATTGCGCCCGACCAGCGAGGAGGCCTGCAAGGCCTGGGAAGATTGCAGCCCGG‑CCGCGATGTAGGTCACAGCGTCGTTCAGCGACTGCATGCTTTCCAGgctgc                                                                                  >  8:286546/1‑149 (MQ=255)                                                                      cTTGCTGGAATCGACCACAGCCTTGTCGGTCT‑GGACAATGACATTGCGCCCGACCAGCGAGGAGTCCTGCAAGGCCTGGaaagcatgcagtcgctgaacgacgctgtgacctacatcgcggccgggctgcaatcttcccaggccttgca                                                                                <  5:8216‑M1/149‑71 (MQ=255)                                                                           tGGTATCGACCACAGCCTTGTCGGTCT‑GGACAATGACATTGCGCCCGACCAGCGAGGAGGCCTGCAAGGCCTGGGAAGATTGCAGCCCGG‑CCGCGATGTAGGTCACAGCGTCGTTCAGCGACTGCATGCTTTccag                                                                                       <  4:70674‑M2/136‑5 (MQ=255)                                                                           tGGTATCGACCACAGCCTTGTCGGTCT‑GGACAATGACATTGCGCCCGACCAGCGAGGAGGCCTGCAAGGCCTGGGAAGATTGCAGCCCGG‑CCGCGATGTAGGTCACAGCGTCGTTCAGCGACTGCATGCTTTccag                                                                                       >  3:70674‑M2/1‑132 (MQ=255)                                                                           tGGTATCGACCACAGCCTTGTCGGTCT‑GGACAATGACATTGCGCCCGACCAGCGAGGAGGCCTGCAAGGCCTGGGAAGATTGCAGCCCGG‑CCGCGATGTAGGTCACAGCGCCGTTCAGCGACTGCATGCTTTCCAGGCTGCTGAACTgc                                                                          >  2:67108/1‑149 (MQ=255)                                                                             gTATCGACCACAGCCTTGTCGGTCT‑GGACAATGACATTGCGCCCGACCAGCGAGGAGGCCTGCAAGGCCTGGGAAGATTGCAGCCCGG‑CCGCGATGTAGGTCACAGCGTCGTTCAGCGACTGCATGCTTTCCAGGCTGCTGAACTgcgc                                                                        <  7:286546/149‑1 (MQ=255)                                                                               aTCGACCACAGCCTTGTCGGTCT‑GGACAATGACATTGCGCCCGACCAGCGAGGAGGCCTGCAAGGCCTGGGAAGATTGCAGCCCGG‑CCGCGATGTAGGTCACAGCGTCGTTCAGc                                                                                                        <  6:178553/115‑1 (MQ=255)                                                                               aTCGACCACAGCCTTGTCGGTCT‑GGACAATGACATTGCGCCCGACCAGCGAGGAGGCCTGCAAGGCCTGGGAAGATTGCAGCCCGG‑CCGCGATGTAGGTCACAGCGTCGTTCAGc                                                                                                        >  5:178553/1‑115 (MQ=255)                                                                                tCGACCACAGCCTTGTCGGTCT‑GGACAATGACATTGCGCCCGACCAGCGAGGAGGCCTGCAAGGCCTGGGAAGATTGCAGCCCGG‑CCGCGATGTAGGTCACAGCGTCGTTCAGCGACTGCATGCTTTCCAGGCTGCTGAACTGCGCCa                                                                      >  7:144706/1‑148 (MQ=255)                                                                                    ccACAGCCTTGTCGGTCT‑GGACAATGACATTGCGCCCGACCAGCGAGGAGGCCTGCAAGGCCTGGGAAGATTGCAGCCCGG‑CCGCGATGTAGGTCACAGCGTCGTTCAGCGACTGCATGCTTTCCAGGCTGCTGAACTGCGCCAACTgg                                                                 <  2:60206/149‑1 (MQ=255)                                                                                     cacaGCCTTGTCGGTCT‑GGACAATGACATTGCGCCCGACCAGCGAGGAGGCCTGCAAGGCCTGGGAAGATTGCAGCCCGG‑CCGCGATGTAGGTCACAGCGTCGTTCAGCGACTGCATGCTTTCCAGGCTGCTGAACTGCGCCAACTgg                                                                 >  3:236109/1‑148 (MQ=255)                                                                                     cacaGCCTTGTCGGTCT‑GGACAATGACATTGCGCCCGACCAGCGAGGAGGCCTGCAAGGCCTGGGAAGATTGCAGCCCGG‑CCGCGATGTAGGTCACAGCGTCGTTCAGCGACTGCATGCTTTCCAGGCTGCTGAACTGCGCCAACTgg                                                                 <  4:236109/148‑1 (MQ=255)                                                                                      acaGCCTTGTCGGTCT‑GGACAATGACATTGCGCCCGACCAGCGAGGAGGCCTGCAAGGCCTGGGAAGATTGCAGCCCGG‑CCGCGATGTAGGTCACAGCGTCGTTCAGCGACTGCATGCTTTCCAGGCTGCTGAACTGCGCCAACTGGGc                                                               <  2:27148/149‑1 (MQ=255)                                                                                               tCGGTCT‑GGACAATGACATTGCGCCCGACCAGCGAGGAGGCCTGCAAGGCCTGGGAAGATTGCAGCCCGG‑CCGCGATGTAGGTCACAGCGTCGTTCAGCGACTGCATGCTTTCCAGGCTGCTGAACTGCGCCAACTGGGcc                                                              <  6:361985/141‑1 (MQ=255)                                                                                               tCGGTCT‑GGACAATGACATTGCGCCCGACCAGCGAGGAGGCCTGCAAGGCCTGGGAAGATTGCAGCCCGG‑CCGCGATGTAGGTCACAGCGTCGTTCAGCGACTGCATGCTTTCCAGGCTGCTGAACTGCGCCAACTGGGcc                                                              >  5:361985/1‑141 (MQ=255)                                                                                                     t‑GGACAATGACATTGCGCCCGACCAGCGAGGAGGCCTGCAAGGCCTGGGAAGATTGCAGCCCGG‑CCGCGATGTAGGTCACAGCGTCGTTCAGCGACTGCATGCTTTCCAGgctg                                                                                   >  3:270533/1‑114 (MQ=255)                                                                                                     t‑GGACAATGACATTGCGCCCGACCAGCGAGGAGGCCTGCAAGGCCTGGGAAGATTGCAGCCCGG‑CCGCGATGTAGGTCACAGCGTCGTTCAGCGACTGCATGCTTTCCAGgctg                                                                                   <  4:270533/114‑1 (MQ=255)                                                                                                           aaTGACATTGCGCCCGACCAGCGAGGAGGCCTGCAAGGCCTGGGAAGATTGCAGCCCGGTACGCGATGTAGGTCACAGCGTCGTTCAGCGACTGCATGCTTTCCAGGCTGCTGAACTGCGCCAACTGGGCCACGAACTCGCCGTTTTcc                                            >  1:105678/1‑149 (MQ=255)                                                                                                           aaTGACATTGCGCCCGACCAGCGAGGAGGCCTGCAAGGCCTGGGAAGATTGCAGCCCGG‑CCGCGATGTAGGTCACAGCGTCGTTCAGCGACTGCATGCTTTCCAGGCTGCTGAACTGCGCCAACTGGGCCACGAACTCGCCGttt                                               <  5:198931/145‑1 (MQ=255)                                                                                                           aaTGACATTGCGCCCGACCAGCGAGGAGGCCTGCAAGGCCTGGGAAGATTGCAGCCCGG‑CCGCGATGTAGGTCACAGCGTCGTTCAGCGACTGCATGCTTTCCAGGCTGCTGAACTGCGCCAACTGGGCCACGAACTCGCCGttt                                               >  6:198931/1‑145 (MQ=255)                                                                                                              gACATTGCGCCCGACCAGCGAGGAGGCCTGCAAGGCCTGGGAAGATTGCAGCCCGG‑CCGCGATGTAGGTCACAGCGTCGTTCAGCGACTGCATGCTTTCCAGGCTGCTGAACTGCGCCAACTGGGc                                                               >  2:175315/1‑126 (MQ=255)                                                                                                              gACATTGCGCCCGACCAGCGAGGAGGCCTGCAAGGCCTGGGAAGATTGCAGCCCGG‑CCGCGATGTAGGTCACAGCGTCGTTCAGCGACTGCATGCTTTCCAGGCTGCTGAACTGCGCCAACTGGGc                                                               <  1:175315/126‑1 (MQ=255)                                                                                                                  ttGCGCCCGACCAGCGAGGAGGCCTGCAAGGCCTGGGAAGATTGCAGCCCGG‑CCGCGATGTAGGTCACAGCGTCGTTCAGCGACTGCATGCTTTCCAGGCTGCTGAACTGCGCCAACTGGGCCAc                                                            <  8:337351/125‑1 (MQ=255)                                                                                                                  ttGCGCCCGACCAGCGAGGAGGCCTGCAAGGCCTGGGAAGATTGCAGCCCGG‑CCGCGATGTAGGTCACAGCGTCGTTCAGCGACTGCATGCTTTCCAGGCTGCTGAACTGCGCCAACTGGGCCAc                                                            >  7:337351/1‑125 (MQ=255)                                                                                                                      gcCCGACCAGCGAGGAGGCCTGCAAGGCCTGGGAAGATTGCAGCCCGG‑CCGCGATGTAGGTCACAGCGTCGTTCAGCGACTGCATGCTTTCCAGGCTGCTGACCTGCGCCAACTGGGCCACGAACTCGCCGTTTTCCTGCGGGTCgcgc                                >  8:240962/1‑149 (MQ=255)                                                                                                                      gcCCGACCAGCGAGGAGGCCTGCAAGGCCTGGGAAGATTGCAGCCCGG‑CCGCGATGTAGGTCACAGCGTCGTTCAGCGACTGCATGCTTTCCAGGCTGCTGAACTGCTCCAACTGGGCCACGAACTCGCCGTTTTCCTGCGGGTCGAGc                                >  4:176396/1‑149 (MQ=255)                                                                                                                      gcCCGACCAGCGAGGAGGCCTGCAAGGCCTGGGAAGATTGCAGCCCGG‑CCGCGATGTAGGTCACAGCGTCGTTCAGCGACTGCATGCTTTCCAGGCTGCTGAACTGCGCCAACTGGGCCACGAACTCGCCGTTTTCCTGCGGGTCGAGc                                >  1:174013/1‑149 (MQ=255)                                                                                                                      gcCCGACCAGCGAGGAGGACTGCAAGGCCTGGGAAGATTGCAGCCCGG‑CCGCGATGTAGGTCACAGCGTCGTTCAGCGACTGCATGCTTTCCAGGCTGCTGAACTGCGCCAACTGGGCCACGAACTCGCCGATTTCCTGCGGGTCGAGc                                >  8:158706/1‑149 (MQ=255)                                                                                                                        ccGACCAGCGAGGAGGCCTGCAAGGCCTGGGAAGATTGCAGCCCGG‑CCGCGATGTAGGTCACAGCGCCGTTCAGCGACTGCATGCTTTCCAGGCTGCTGAACTGCGCCAACTGGGCCACGAACTCGCCGTTTTCCTGCGGGTCGAGCgg                              <  1:67108/149‑1 (MQ=255)                                                                                                                            ccAGCGAGGAGGCCTGCAAGGCCTGGGAAGATTGCAGCCCGG‑CCGCGATGTAGGTCACAGCGTCGTTCAGCGACTGCATGCTTTCCAGGCTGCTGAACTGCGCCAACTGGGCCACGAACTCGCCGTTTTCCTGCGGGTCGAGCGggttc                          >  4:235806/1‑149 (MQ=255)                                                                                                                             cAGCGAGGAGGCCTGCAAGGCCTGGGAAGATTGCAGCCCGG‑CCGCGATGTAGGTCACAGCGTCGTTCAGCGACTGGATGCTTTCCAGGCTGCTGAACTGCGCCAACTGGGCCACGAACTCGCCGTTTTCCTGCGGGTCGAGCGggttct                         >  1:67661/1‑149 (MQ=255)                                                                                                                             cAGCGAGGAGGCCTGCAAGGCCTGGGAAGATTGCAGCCCGG‑CCGCGATGTAGGTCACAGCGTCGTTCAGCGACTGCATGCTTTCCAGGCTGCTGAACTGCGCCAACTGGGCCACGCACTCGCCGTTTTCCTGCGGGTCGAGCGggttct                         >  8:77448/1‑149 (MQ=255)                                                                                                                              aGCGAGGAGGCCTGCAAGGCCTGGGAAGATTGCAGCCCGG‑CCGCGATGTAGGTCACAGCGTCGTTCAGCGACTGCATGCTTTCCAGGCTGCTGAACTGCGCCACCTGGGCCACGAACTCGCCGTTTTCCTGCGGGTCGAGCGggttctg                        >  7:164141/1‑149 (MQ=255)                                                                                                                               gCGAGGAGTCCTGCAAGGCCTGGGAAGATTGCAGCCCGG‑CCGGGATGTAGGTCACAGCGTCGTTCAGCGTCTGCATGCTTTCCAGGCTGCTGAACTGCGCCATCTGGGCGTCGAACTCGCCGTTTTCCTGCGGGTCGAGCGggttctgg                       <  4:56538/149‑1 (MQ=255)                                                                                                                                        ccTGCAAGGCCTGGGAAGATTGCAGCCCGG‑CCGCGATGTAGGTCACAGCGTCGTTCAGCGACTGCATGCTTTCCAGGCTGCTGAACTGCGCCAACTGGGCCACGAACTCGCCGTTTTCCTGCGGGTCGAGCGGGTTCTGGTTCTGCATc              <  2:105678/149‑1 (MQ=255)                                                                                                                                          tGCAAGGCCTGGGAAGATTGCAGCCCGG‑CCGCGATGTAGGTCACAGCGTCGTTCAGCGACTGCATGCTTTccaggccttgcaggactcctcgctggtcgggcgcaatgtcattgtccagaccgacaaggctgtggtcgattccagcaag            <  5:8216‑M2/149‑80 (MQ=255)                                                                                                                                           gCAAGGCCTGGGAAGATTGCAGCCCGG‑CCGCGATGTAGGTCACAGCGTCGTTCAGCGACTGCATGCTTTCCAGGCTGCTGAACTGCGCCAACTGGGCCACGAACTCGCCGTTTTCCTGCGGGTCGAGCGGGTTCTGGTTCTGCATCTgg           >  3:2091/1‑149 (MQ=255)                                                                                                                                             aaGGCCTGGGAAGATTGCAGCCCGG‑CCGCGATGTAGGTCACAGCGTCGTTCAGCGACTGCATGCTTTCCAGGCTGCTGAACTGCGCCAACTGGGCCACGAACTCGCCGTTTTCCTGCGGGTCGAGCGGGTTCTGGTTCTGCATCTGGGt         <  2:174013/149‑1 (MQ=255)                                                                                                                                             aaGGCCTGGGAAGATTGCAGCCCGG‑CCGCGATGTAGGTCACAGCGGCGTTCAGCGACTGCATGCTTTCCAGGCTGCTGAACTGCGCCAACTGGGCCACTAACTCTCCGTTTTCCTGCGGGTCGAGCGGGTTCTGGTTCTGCATCTGGGt         <  7:158706/149‑1 (MQ=255)                                                                                                                                              aGGCCTGGGAAGATTGCAGCCCGG‑CCGCGATGTAGGTCACAGCGTCGTTCAGCGACTGCATGCTTTccaggccttgcaggcctcctcgctggtcgggcgcaatgtcattgtccagaccgacaaggctgtggtcgataccagcaaggaca        <  1:228438‑M2/149‑84 (MQ=255)                                                                                                                                                  cTGGaaagcatgcagtcgctgaacgacgctgtgacctacatcgcggccgggctgcaatcttcccaggccttgcaggcctcctcgctggtcgggcgcaatgtcattgtccagaccgacaaggctgtggtcgatacca                  <  4:70674‑M1/136‑133 (MQ=255)                                                                                                                                                  cTGGaaagcatgcagtcgctgaacgacgctgtgacctacatcgcggccgggctgcaatcttcccaggccttgcaggcctcctcgctggtcgggcgcaatgtcattgtccagaccgacaaggctgtggtcgatacca                  >  3:70674‑M1/1‑4 (MQ=255)                                                                                                                                                  cTGGGAAGATTGCAGCCCGG‑CCGCGATGTAGGTCACAGCGTCGTTCAGCGACTGCATGCTTTCCAGGCTGCTGAACTGCGCCAACTGGGCCACGAACTCGCCGTTTTCCTGCGGGTCGAGCGGGTTCTGGTTCTGCATCTGGGTg        <  4:100037/145‑1 (MQ=255)                                                                                                                                                  cTGGGAAGATTGCAGCCCGG‑CCGCGATGTAGGTCACAGCGTCGTTCAGCGACTGCATGCTTTCCAGGCTGCTGAACTGCGCCAACTGGGCCACGAACTCGCCGTTTTCCTGCGGGTCGAGCGGGTTCTGGTTCTGCATCTGGGTg        >  3:100037/1‑145 (MQ=255)                                                                                                                                                   tGGaaagcatgcagtcgctgaacgacgctgtgacctacatcgcggccgggctgcaatcttcccaggccttgcaggcctcctcgctggtcgggcgcaatgtcattgtccagaccgacaaggctgtggtcgataccagcaaggacatgaag    >  2:172640‑M1/1‑3 (MQ=255)                                                                                                                                                   tGGaaagcatgcagtcgctgaacgacgctgtgacctacatcgcggccgggctgcaatcttcccaggccttgcaggcctcctcgctggtcgggcgcaatgtcattgtccagaccgacaaggctgtggtcgataccagcaaggacatgaag    >  1:157924‑M1/1‑3 (MQ=255)                                                                                                                                                     ggAAGATTGCAGCCCGG‑CCGCGATGTAGGTCACAGCGTCGTTCAGCGACTGCATGCTTTCCAGGCTGCTGAACTGCGCCAACTGGGCCACGAACTCGCCGTTTTCCTGCGGGTCGAGCGGGTTCTGGTTCTGCATCTGGGTGACCAGc  >  4:289580/1‑148 (MQ=255)                                                                                                                                                     |                                                                                                                                                     TCCTTGTCGTAGATCCCCACCGAGGTGGAGGTACTGGACGACGTCAGGTTGACCGAGCC‑CTTCATGTCCTTGCTGGTATCGACCACAGCCTTGTCGGTCT‑GGACAATGACATTGCGCCCGACCAGCGAGGAGGCCTGCAAGGCCTGGGAAGATTGCAGCCCGG‑CCGCGATGTAGGTCACAGCGTCGTTCAGCGACTGCATGCTTTCCAGGCTGCTGAACTGCGCCAACTGGGCCACGAACTCGCCGTTTTCCTGCGGGTCGAGCGGGTTCTGGTTCTGCATCTGGGTGACCAGC  >  NC_002947/4982257‑4982550

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.