| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 5518943 | 69 (1.170) | 4 (0.070) | 4/252 | NT | 6.0% | coding (787/789 nt) | PP_4852 | AraC family transcriptional regulator |
| ? | NC_002947 | = 5519011 | 58 (1.020) | coding (719/789 nt) | PP_4852 | AraC family transcriptional regulator | |||||
CTTTTCCTGCTGCGCGGTATTGGCAGCGAAACCTTGGGCACTGAACAACACCGCCAGCGCCAGTAACGGGATTTGCAGCACTTTCATGGAGTGGTCTCCTTGGCTCCGCGCCCGATGCACGGTGATCGAGCTGAGTGTAGCCAAGAATGTTCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/5518791‑5518943‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gttcaTCGCCATGTTCCAGCGCCAGGCCCGGTGTACGCCCGAGCAGTACCGCCGGCAGGCGCGGACGGGGCGCTGAACATTCTTGGCTACACTCAGCTCGATCACCGTGCATCGGGCGCGGAGCCAAGGAGACCACTCCATGAAAGTGCTGC < NC_002947/5519011‑5518865 CTTTTCCTGCTGCGCGGTATTGGCAGCGAAACCTTGGGCACTGAACAACACCGCCAGCGCCAGTAACGGGATTTGCAGCACTTTCATGGAGTGGTCTCCTTGGCTCCGCGCCCGATGCACGGTGATCGAGCTGAGTGTAGCCAAGAATG > 5:80434/1‑149 TTTTCCTGCTGCGCGGTATTGGCAGCGTAACCTTGGGTACTGAACAACACCGCCAGCGCCAGTAACGGGATTTGCAGCACTTTCATGGAGTGGTCTCCTTGGCTCCGCGCCCGATGCACGGTGATCGAGCTGAGTGTAGCCAAGAATGT < 4:313318/149‑1 TTCCTGCTGCGCGGTATTGGCAGCGAAACCTTGGGTACTGAACAACACCGCCAGCGCCAGTAACGGGATTTGCAGCACTTTCATGGAGTGGTCTCCTTGGCTCCGCGCCCGATGCACGGTGATCGAGCTGAGTGTAGCCAAGAATGT < 4:308133/147‑1 CTTGGGCACTGAACAACACCGCCAGCGCCAGTAACGGGATTTGCAGCACTTTCATGGAGTGGTCTCCTTGGCTCCGCGCCCGATGCACGGTGATCGAGCTGAGTGTAGCCAAGAATGTTCATCGCCATGTTCCAGCGCCAGGCCCGGTG > 1:1885/1‑149 TGAACAACACCGCCAGCGCCAGTAACGGGATTTGCAGCACTTTCATGGAGTGGTCTCCTTGGCTCCGCGCCCGATGCACGGTGATCGAGCTGAGTGTAGCCAAGAATGTTCATCGCCATGTTCCAGCGCCAGGCCCGGTGTACGCCC > 3:282293/1‑147 CGGGATTTGCAGCACTTTCATGGAGTGGTCTCCTTGGCTCCGCGCCCGATGCACGGTGATCGAGCTGAGTGTAGCCAAGAATGTT > 3:354466/1‑85 CGGGATTTGCAGCACTTTCATGGAGTGGTCTCCTTGGCTCCGCGCCCGATGCACGGTGATCGAGCTGAGTGTAGCCAAGAATGTT < 4:354466/85‑1 CACTTTCATGGAGTGGTCTCCTTGGCTCCGCGCCCGATGCACGGTGATCGAGCTGAGTGTAGCCAAGAATGTTCATCGCCATGTTCCAGCGCCAGGCCCGGTGTACGCCCGAGCAGTACCGCCGGCAGGCGCGGACGGGGCGCTGAACA < 2:1885/149‑1 TCATGGAGTGGTCTCGTTGGCTCCGCGCCCGATGCACGGTGATCGAGCTGAGTGTAGCCAAGAATGTTCATCGCCATGTTCCAGCGCCAGGCCCGGTGTACGCCCGAGCAGTACCGCCGGCAGGCGCGGACGGGGCGCTGAACATTCT < 4:282293/148‑1 CATCGCCATGTTCCAGCGCCAGGCCCGGTGTACGCCCGAGCAGTACCGCCGGCAGGCGCGGACGGGGCGCTGAACATTCTTGGCTACACTCAGCTCGATCACCGTGCATCGGGCGCGGAGCCAAGGAGACCACTCCATGAAAGTGCTG < 4:290149/148‑1 ATCGCCATGTTCCAGCGCCAGGCCCGGTGTACGCCCGAGCAGTACCGCCGGCAGGCGCGGACGGGGCGCTGAACATTCTTGGCTACACTCAGCTCGATCACCGTGCATCGGGCGCGGAGCCAAGGAGACCACTCCATGAAAGTGCTGC < 5:56136/148‑1 CTTTTCCTGCTGCGCGGTATTGGCAGCGAAACCTTGGGCACTGAACAACACCGCCAGCGCCAGTAACGGGATTTGCAGCACTTTCATGGAGTGGTCTCCTTGGCTCCGCGCCCGATGCACGGTGATCGAGCTGAGTGTAGCCAAGAATGTTCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/5518791‑5518943‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gttcaTCGCCATGTTCCAGCGCCAGGCCCGGTGTACGCCCGAGCAGTACCGCCGGCAGGCGCGGACGGGGCGCTGAACATTCTTGGCTACACTCAGCTCGATCACCGTGCATCGGGCGCGGAGCCAAGGAGACCACTCCATGAAAGTGCTGC < NC_002947/5519011‑5518865 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |