New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5543804 =	58 (0.980)	3 (0.050)	3/250	NT	5.4%	coding (339/864 nt)	PP_4875	membrane protein
	?	NC_002947	5543859 =	50 (0.890)					coding (284/864 nt)	PP_4875	membrane protein

GGTCATGGGTGATCCCATCACCTTTCTGGTGATTGCGGGTGCCTTGGCCCTGGCCGCCATGTTGCGTGCCGAGCACCCCTGGAGCCGGGTGTTGCTCGCCAGTGCCGTGTTCGCCGTGGCTTTCAGCCTCGTGCTTGATCTGGCGCTGGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5543954‑5543804 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctggcgAGCAACACCCGGCTCCAGGGGTGCTCGGCACGCAACATGGCGGCCAGGGCCAAGGCACCCGCAATCACCAGAAAGGTGATGGGATCACCCATGACCCACACGGCCAGCCCGGCCAGCAAGCCGCCGGCGATGACCGATGTAGCATC  >  NC_002947/5543859‑5544004                                                                                                                                                                                                                                                                                                           GGTCATGGGTGATCCCATCACCTTTCTGGTGATTGCGGGTGCCTTGGCCCTGGCCGCCATGTTGCGTGCCGAGCACCCCTGGAGCCGGGTGTTGCTCGCCAGTGCCGTGTTCGCCGTGGCTTTCAGCCTCGTGCTTGATCTGGCGCTGG                                                                                                                                                      <  5:247033/149‑1                                                                                                TCGCCAGTGCCGTGTTCGCCGTGGCTTTCAGCCTCGTGCTTGATCTGGCGCTGGCGAGCAACACCCGGCTCCAGGGGTGCTCGGCACGCAACATGGCGGCCAGGGCCAAGGCACCCGCAATCACCAGAAAGGTGATGGG                                                                 <  1:295944/139‑1                                                                                                TCGCCAGTGCCGTGTTCGCCGTGGCTTTCAGCCTCGTGCTTGATCTGGCGCTGGCGAGCAACACCCGGCTCCAGGGGTGCTCGGCACGCAACATGGCGGCCAGGGCCAAGGCACCCGCAATCACCAGAAAGGTGATGGG                                                                 >  2:295944/1‑139                                                                                                   CCAGTGCCGTGTTCGCCGTGGCTTTCAGCCTCGTGCTTGATCTGGCGCTGGCGAGCAACACCCGGCTCCAGGGGTGCTCGGCACGCAACATGGCGGCCAGGGCCAAGGCACCCGCAATCACCAGAAAGGTGATGGGCTCAGCCAGGAC                                                     >  8:257383/1‑148                                                                                                    CAGTGCCGTGTTCGCCGTGGCTTTCAGCCTCGTGCTTGATCTGGCGCTGG                                                                                                                                                      <  5:314193/50‑1                                                                                                    CAGTGCCGTGTTCGCCGTGGCTTTCAGCCTCGTGCTTGATCTGGCGCTGG                                                                                                                                                      >  6:314193/1‑50                                                                                                                                                   TGGCGAGCAACACCCGGCTCCAGGGGTGCTCGGCACGCAACATGGCGGCCAGGGCCAAGGCACCCGCAATCACCAGAAAGGTGATGGGATCACCCATGACCCACACGGCCAGCCCGGCCAGCAAGCCGCCGGCGAT                 >  7:197046/1‑136                                                                                                                                                   TGGCGAGCAACACCCGGCTCCAGGGGTGCTCGGCACGCAACATGGCGGCCAGGGCCAAGGCACCCGCAATCACCAGAAAGGTGATGGGATCACCCATGACCCACACGGCCAGCCCGGCCAGCAAGCCGCCGGCGAT                 <  8:197046/136‑1                                                                                                                                                     GCGAGCAACACCCGGCTCCAGGGGTGCTCGGCACGCAACATGGCGGCCAGGGCCAAGGCACCCGCAATCACCAGAAAGGTGATGGGATCACCCATGACCCACACGGCCAGCCCGGCCAGCAAGCCGCCGGCGATGACCGATGTAGCATC  >  2:306652/1‑149                                                                                                                                                                                                                                                                                                           GGTCATGGGTGATCCCATCACCTTTCTGGTGATTGCGGGTGCCTTGGCCCTGGCCGCCATGTTGCGTGCCGAGCACCCCTGGAGCCGGGTGTTGCTCGCCAGTGCCGTGTTCGCCGTGGCTTTCAGCCTCGTGCTTGATCTGGCGCTGGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5543954‑5543804 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctggcgAGCAACACCCGGCTCCAGGGGTGCTCGGCACGCAACATGGCGGCCAGGGCCAAGGCACCCGCAATCACCAGAAAGGTGATGGGATCACCCATGACCCACACGGCCAGCCCGGCCAGCAAGCCGCCGGCGATGACCGATGTAGCATC  >  NC_002947/5543859‑5544004

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.