New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5721453	43 (0.730)	3 (0.060)	3/220	NT	6.2%	intergenic (+34/+76)	PP_5021/glnQ	methyl‑accepting chemotaxis transducer/glutamine transport ATP‑binding protein GlnQ
	?	NC_002947	= 5721496	55 (1.110)					intergenic (+77/+33)	PP_5021/glnQ	methyl‑accepting chemotaxis transducer/glutamine transport ATP‑binding protein GlnQ

AACCGAAGTGTGATCAATGTGCGGGATGTTTCGGATCAGACCAGCGCGGCCAGTGAGCAGACGGCAGCCTCGAGTGGAGAGCTGGAGCAGTTGGGGCAGCAATTGCGGGGGATGGTTGGGCGGTTCAGCATCTGACTTCGCCTCGCCCTCTTCGCGGGCAAGCCCGCTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5721285‑5721453 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcttcgcgggcaagcccgctcCTGCATGTCCACCACTGCCTTGATGGGGGTGATGTACCTGTGTGAGCGGGCTTGCCCGCGAAGAGGGCGAGGCGAAGTCAGATGCTGAACCGCCCAACCATCCCCCGCAATTGCTGCCCCAACTGCTCCAGCTCTCCACTCGAGG  <  NC_002947/5721496‑5721352                                                                                                                                                                                                                                                                                                                            AACCGAAGTGTGATCAATGTGCGGGATGTTTCGGATCAGACCAGCGCGGCCAGTGAGCAGACGGCAGCCTCGAGTGGAGAGCTGGAGCAGTTGGGGCAGCAATTGCGGGGGATGGTTGGGCGGTTCAGCATCAGACTTCGCCTCGCCCT                                                                                                                                                                       >  7:274402/1‑149      AAGTGTGATCAATGTGCGGGATGTTTCGGATCAGACCAGCGCGGCCAGTGAGCAGACGGCAGCCTCGAGTGGAGAGCTGGAGCAGTTGGGGCAGCAATTGCGGGGGATGGTTGGGCGGTTCAGCATCTGACTTCGCCTCGCCCTCTTCG                                                                                                                                                                  <  1:323497/149‑1         TGTGATCAATGTGCGGGATGTTTCGGATCAGACCAGCGCGGCCAGTGAGCAGACGGCAGCCTCGAGTGGAGAGCTGGAGCAGTTGGGGCAGCAATTGCGGGGGATGGTTGGGCGGTTCAGCATCTGACTTCGCCTCGCCCTCTTCGCGG                                                                                                                                                               <  8:222343/149‑1           TGATCAATGTGCGGGATGTTTCGGATCAGACCAGCGCGGCCAGTGAGCAGACGGCAGCCTCGAGTGGAGAGCTGGAGCAGTTGGGGCAGCAATTGCGGGGGATGGTTGGGCGGTTCAGCATCTGACTTCGCCTCGCCCTCTTCGCGGGC                                                                                                                                                             <  8:39093/149‑1           TGATCAATGTGCGGGATGTTTCGGATCAGACCAGCGCGGCCAGTGAGCAGACGGCAGCCTCGAGTGGAGAGCTGGAGCAGTTGGGGCAGCAATTGCGGGGGATGGTTGGGCGGTTCAGCATCTGACTTCGCCTCGCCCTCTTCGCGGGC                                                                                                                                                             <  3:313260/149‑1            GATCAATGTGCGGGATGTTTCGGATCAGACCAGCGCGGCCAGTGAGCAGACGGCAGCCTCGAGTGGAGAGCTGGAGCAGTTGGGGCAGCAATTGCGGGGGATGGTTGGGCGGTTCAGCATCTGACTTCGCCTCGCCCTCTTCGCGG                                                                                                                                                               <  8:7879/146‑1            GATCAATGTGCGGGATGTTTCGGATCAGACCAGCGCGGCCAGTGAGCAGACGGCAGCCTCGAGTGGAGAGCTGGAGCAGTTGGGGCAGCAATTGCGGGGGATGGTTGGGCGGTTCAGCATCTGACTTCGCCTCGCCCTCTTCGCGG                                                                                                                                                               >  7:7879/1‑146              TCAATGTGCGGGATGTTTCGGATCAGACCAGCGCGGCCAGTGAGCAGACGGCAGCCTCGAGTGGAGAGCTGGAGCAGTTGGGGCAGCAATTGCGGGGGATGGTTGGGCGGTTCAGCATCTGACTTCGCCTCGCCCTCTTCGCGGGCAA                                                                                                                                                           <  2:269306/148‑1               CAATGTGCGGGATGTTTCGGATCAGACCAGCGCGGCCAGTGAGCAGACGGCAGCCTCGAGTGGAGAGCTGGAGCAGTTGGGGCAGCAATTGCGGGGGATGGTTGGGCGGTTCAGCATCTGACTTCGCCTCGCCCTCTTCGCGG                                                                                                                                                               >  5:272710/1‑143               CAATGTGCGGGATGTTTCGGATCAGACCAGCGCGGCCAGTGAGCAGACGGCAGCCTCGAGTGGAGAGCTGGAGCAGTTGGGGCAGCAATTGCGGGGGATGGTTGGGCGGTTCAGCATCTGACTTCGCCTCGCCCTCTTCGCGG                                                                                                                                                               <  6:272710/143‑1                                                                                   TGGAGCAGTTGGGGCAGCAATTGCGGGGGATGGTTGGGCGGTTCAGCATCTGACTTCGCCTCGCCCTCTTCGCGGGCAAGCCCGCTCCTGCATGTCCACCACTGCCTTGATGGGGGTGATGTACCTGTGTGAGCGG                                                                                                  <  5:345760/136‑1                                                                                   TGGAGCAGTTGGGGCAGCAATTGCGGGGGATGGTTGGGCGGTTCAGCATCTGACTTCGCCTCGCCCTCTTCGCGGGCAAGCCCGCTCCTGCATGTCCACCACTGCCTTGATGGGGGTGATGTACCTGTGTGAGCGG                                                                                                  >  6:345760/1‑136                                                                                          GTTGGGGCAGCAATTGCGGGGGATGGTTGGGCGGTTCAGCATCTGACTTCGCCTCGCCCTCTTCGCGGGCAAGCCCGCTCCTGCATGTCCACCACTGCCTTGATGGGGGTGATGTACCTGTTTGAGCGGGATT                                                                                              >  8:341438/1‑133                                                                                                                                                                AAGCCCGCTCCTGCATGTCCACCACTGCCTTGAGGGGGGTGATGTACCTGTGTGAGCGGGCTTGCCCGCGAAGAGGGCGAGGCGAAGTCAGATGCTGAACCGCCCAACCATCCCCCGCAATTGCTGCCCCAACTGCTCCAGCTCTCCAC        <  2:304870/149‑1                                                                                                                                                                  GCCCGCTCCTGCATGTCCACCACTGCCTTGATGGGGGTGATGTACCTGTGTGAGCGGGCTTGCCCGCGAAGAGGGCGAGGCGAAGTCAGATGCTGAACCGCCCAACCATCCCCCGCAATTGCTGCCCCAACTGCTCCAGCTCTCCACTC      <  5:283748/149‑1                                                                                                                                                                  GCCCGCTCCTGCATGGCCACCACTGCCTTGATGGGGGTGATGTACCTGTGTGAGCGGGCTTGCCCGCGAAGAGGGCGAGGCGAAGTCAGATGCTGAACCACCCAACCATCCCCCGCAATTGCTGCCCCAACTGCTCCAGCTCTCCACcc      <  2:348964/149‑3                                                                                                                                                                   CCCGCTCCTGCATGTCCACCACTGCCTTGATGGGGGTGATGTACCTGTGTGAGCGGGCTTGCCCGCGAAGAGGGCGAGGCGAAGTCAGATGCTGAACCGCCCAACCATCCCCCGCAATTGCTGCCCCAACTGCTCCAGCTCTCCACTC      >  4:110821/1‑148                                                                                                                                                                    CCGCTCCTGCATGTCCACCACTGCCTTGATGGGGGTGATGTACCTGTGTGAGCGGGCTTGCCCGCGAAGAGGGCGAGGCGAAGTCAGATGCTGAACCGCCCAACCATCCCCCGCAATTGCTGCCCCAACTGCTCCAGCTCTCCACTCGA    <  5:163093/149‑1                                                                                                                                                                    CCGCTCCTGCATGTCCACCACTGCCTTGATGGGGGTGATGTACCTGTGTGAGCGGGCTTGCCCGCGAAGAGGGCGAGGCGAAGTCAGATGCTGAACCGCCCAACCATCCCCCGCAATTGCTGCCCCAACTGCTCCAGCTCTCCACTCGA    <  3:134673/149‑1                                                                                                                                                                      GCTCCTGCATGTCCACCACTGCCTTGATGGGGGTGATGTACCTGTGTGAGCGGGCTTGCCCGCGAAGAGGGCGAGGCGAAGTCAGATGCTGAACCGCCCAACCATCCCCCGCAATTGCTGCCCCAACTGCTCCAGCTCTCCACTCGAGG  >  7:222517/1‑149                                                                                                                                                                                                                                                                                                                            AACCGAAGTGTGATCAATGTGCGGGATGTTTCGGATCAGACCAGCGCGGCCAGTGAGCAGACGGCAGCCTCGAGTGGAGAGCTGGAGCAGTTGGGGCAGCAATTGCGGGGGATGGTTGGGCGGTTCAGCATCTGACTTCGCCTCGCCCTCTTCGCGGGCAAGCCCGCTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5721285‑5721453 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcttcgcgggcaagcccgctcCTGCATGTCCACCACTGCCTTGATGGGGGTGATGTACCTGTGTGAGCGGGCTTGCCCGCGAAGAGGGCGAGGCGAAGTCAGATGCTGAACCGCCCAACCATCCCCCGCAATTGCTGCCCCAACTGCTCCAGCTCTCCACTCGAGG  <  NC_002947/5721496‑5721352

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.