New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5739649 =	56 (0.950)	3 (0.050)	3/244	NT	5.9%	coding (579/1365 nt)	hutF	formiminoglutamate deiminase
	?	NC_002947	5739743 =	44 (0.800)					coding (673/1365 nt)	hutF	formiminoglutamate deiminase

GTCGTCGACTTCCTTCTGCTGTTCGGCGATGTGGATATGCACCGGGCACTGCCTGTCGCTGGCCGCCAGCACTTCGGCGATCTGCCCAGGCCTCACCGCCCGCAGAGAGTGGAAGCACAGGCCCAGGTGCTGCGCGGGTTGCGCGGCCAGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5739799‑5739649 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcggccagcGACAGGCAGTGCCCGGTGCATATCCACATCGCCGAACAGCAGAAGGAAGTCGACGACTGCCTGGCCTGGAGCGGCCTGCGCCCGCTGCAGTGGCTGTACGAGCACGTGGACGTGGACCGCCGCTGGTGCCTGGTACAC  >  NC_002947/5739743‑5739880                                                                                                                                                                                                                                                                                                   GTCGTCGACTTCCTTCTGCTGTTCGGCGATGTGGATATGCACCGGGCACTGCCTGTCGCTGGCCGCCAGCACTTCGGCGATCTGCCCAGGCCTCACCGCCCGCAGAGAGTGGAAGCACAGGCCCAGGTGCTGCGCGGGTTGCGCGGCCA                                                                                                                                              <  5:333878/149‑1                                 GGATATGCACCGGGCACTGCCTGTCGCTGGCCGCCAGCACTTCGGCGATCTGCCCAGGCCTCACCGCCCGCAGAGAGTGGAAGCACAGGCCCAGGTGCTGCGCGGGTTGCGCGGCCA                                                                                                                                              >  5:198252/1‑117                                 GGATATGCACCGGGCACTGCCTGTCGCTGGCCGCCAGCACTTCGGCGATCTGCCCAGGCCTCACCGCCCGCAGAGAGTGGAAGCACAGGCCCAGGTGCTGCGCGGGTTGCGCGGCCA                                                                                                                                              <  6:198252/117‑1                                                         CGCTGGCCGCCAGCACTTCGGCGATCTGCCCAGGCCTCACCGCCCGCAGAGAGTGGCAGCACAGGCCCAGGTGCTGCGCGGGTTGCGAGGCCAGCGACAGGCAGTGCCCGGTGCATATCCACATCGCCGAACAGCAGAAGGAAGTCGAC                                                                                      >  6:91746/1‑149                                                            TGGCCGCCAGCACTTCGGCGATCTGCCCAGGCCTCACCGCCCGCAGAGAGTGGAAGCACAGGCCCAGGTGCTGCGCGGGTTGCGCGGCCAGCGACAGGCAGTGCCCGGTGCATATCCACATCGCCGAACAGCAGAAGGAAGTCGACGAC                                                                                   >  5:58120/1‑149                                                                                    GCCCAGGCCTCACCGCCCGCAGAGAGTGGAAGCACAGGCCCAGGTGCTGCGCGGGTTGCGCGGCCAGCGACAGGCAGTGCCCGGTGCATATCCACATCGCCGAACAGCAGAAGGAAGTCGACGACTGCCTGGCCTGGAGCGGCCTGCGC                                                           <  6:58120/149‑1                                                                                                                                               GCGGCCAGCGACAGGCAGTGCCCGGTGCATATCCACATCGCCGAACAGCAGAAGGAAGTCGACGACTGCCTGGCCTGGAGCGGCCTGCGCCCGCTGCAGTGGCTGTACGAGCACGTGGACGTGGACCGCCGCTGGTGCCTGGTACAC  <  4:206816/147‑1                                                                                                                                                                                                                                                                                                   GTCGTCGACTTCCTTCTGCTGTTCGGCGATGTGGATATGCACCGGGCACTGCCTGTCGCTGGCCGCCAGCACTTCGGCGATCTGCCCAGGCCTCACCGCCCGCAGAGAGTGGAAGCACAGGCCCAGGTGCTGCGCGGGTTGCGCGGCCAGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5739799‑5739649 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcggccagcGACAGGCAGTGCCCGGTGCATATCCACATCGCCGAACAGCAGAAGGAAGTCGACGACTGCCTGGCCTGGAGCGGCCTGCGCCCGCTGCAGTGGCTGTACGAGCACGTGGACGTGGACCGCCGCTGGTGCCTGGTACAC  >  NC_002947/5739743‑5739880

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.