New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5739649 =	56 (0.950)	3 (0.050)	3/244	NT	5.9%	coding (579/1365 nt)	hutF	formiminoglutamate deiminase
	?	NC_002947	5739743 =	44 (0.800)					coding (673/1365 nt)	hutF	formiminoglutamate deiminase

CTTCATCAACTCCACTGAACAGTACCTGCAACTGCAAGCGCAACTCTTCCCGTTGCTGGCCGCGCAACCCGCGCAGCACCTGGGCCTGTGCTTCCACTCTCTGCGGGCGGTGAGGCCTGGGCAGATCGCCGAAGTGCTGGCGGCCAGCGACAGGCAGTGCCCGGTGCATATCCACATCGCCGAACAGCAGAAGGAAGTCGACGACTGCCTGGCCTGGAGCGGCCTGCGCCCGCTGCAGTGGCTGTACGAGCACGTGGACGTGGACCGCCGCTGGTGCCTGGTACAC  >  NC_002947/5739595‑5739880                                                                                                                                                     |                                                                                                                                          gtcgacttccttctgctgttcggcgatgtggatatgcaccgggcactgcctgtcGCTGGCCTCGCAACCCGCGCAGCACCTGGGCCTGTGCTGCCACTCTCTGCGGGCGGTGAGGCCTGGGCAGATCGCCGAAGTGCTGGCGGCCAGCg                                                                                                                                           >  6:91746‑M1/55‑149 (MQ=255)    catcaACTCCACTGAACAGTACCTGCAACTGCAAGCGCAACTCTTCCCGTTGCTGGCCGCGCAACCCGCGCAGCACCTGGGCCTGTGCTTCCACTCTCTGCGGGCGGTGAGGCCTGGGCAGATCGCCGAAGTGCTGGCGGCCAGCGAc                                                                                                                                         <  6:274132/148‑1 (MQ=255)         aCTCCACTGAACAGTACCTGCAACTGCAAGCGAAACTCTTCCCTTTGCTGGCCGCGAAACCCGAGCAGCACCTGGGCCAGTCCTTCCACTCTCTGCGGGCGGTGAGGCCTGGGCAGATCTCCGAAGTGCTGGCGGCCAGCGACAGGCAg                                                                                                                                   >  2:216416/1‑149 (MQ=255)             cACTGAACAGTACCTGCAACTGCAAGCGCAACTCTTCCCGTTGCTGGCCGCGCAACCCGCGCAGCACCTGGGCCTGTGCTTCCACTCTCTGCGGGCGGTGAGGCCTGGGCAGATCGCCGAAGTGCTGGCGGCCAGCGACAGGCAGTGcc                                                                                                                               >  3:306226/1‑149 (MQ=255)              aCTGAACAGTACCTGCAACTGCAAGCGCAACTCTTCCCGTTGCTGGCCGCGCAACCCGCGCAGCACCTGGGCCTGTGCTTCCACTCTCTGCGGGCGGTGAGGCCTGGGCAGATCGCCGAAGTGCTGGCGGCCAGCGACAGGCAGTGccc                                                                                                                              >  3:206816/1‑149 (MQ=255)               cTGAACAGTACCTGCAACTGCAAGCGCAACTCTTCCCGTTGCTGGCCGCGCAACCCGCGCAGCACCTGGGCCTGTGCTTCCACTCTCTGCGGGCGGTGAGGCCTGGGCAGATCGCCGAAGTGCTGGCGGCCAGCGACAGGCAGTGCCCg                                                                                                                             <  2:334404/149‑1 (MQ=255)                  aaCAGTACCTGCAACTGCAAGCGCAACTCTTCCCGTTGCTGGCCGCGCAACCCGCGCAGCACCTGGGCCTGTGCTTCCACTCTCTGCGGGCGGTGAGGCCTGGGCAGATCGCCGAAGTGCTGGCGGCCAGCGACAGGCAGTGCCCGGt                                                                                                                           <  3:70603/148‑1 (MQ=255)                      gTAACTGAAACTGCAAGCGCAACTCTTCCCGTTGATGGCCGCGCAACCCGCGCAGCACCTGGGCCTGTGCTTCCACTCTCTGCGGGCGGTGAGGCCTGGGCAGAACGCCGAAGTGCTGGCGGCCAGCGACAGGAAGTGCCCGGTGCata                                                                                                                      >  4:330513/1‑149 (MQ=255)                           tgcaactgcaaGCGCAACTCTTCCCGTTGCTGGCCGCGCAACCCGCGCAGCACCTGGGCCTGTGCTTCCACTCTCTGCGGGCGGTGAGGCCTGGGCAGATCGCCGAAGTGCTGGCGGCCAGCGACAGGCAGTGCCCGGTGCATATCca                                                                                                                  >  5:203344/1‑148 (MQ=255)                            gcaactgcaaGCGCAACTCTTCCCGTTGCTGGCCGCGCAACCCGCGCAGCACCTGGGCCTGTGCTTCCACTCTCTGCGGGCGGTGAGGCCTGGGCAGATCGCCGAAGTGCTGGCGGCCAGCGACAGGCAGTGCCCGGTGCATATCcaca                                                                                                                >  2:258489/1‑149 (MQ=255)                                  gcaaGCGCAACTCTTCCCGTTGCTGGCCGCGCAACCCGCGCAGCACCTGGGCCTGTGCTTCCACTCTCTGCGGGCGGTGAGGCCTGGGCAGATCGCCGAAGTGCTGGCGGCCAGCGACAGGCAGTGCCCGGTGCATATCCACATCGcc                                                                                                           >  2:241126/1‑148 (MQ=255)                                   caaGCGCAACTCTTCCCGTTGCTGGCCGCGCAACCCGCGCAGCACCTGGGCCTGTGCTTCCACTCTCTGCGGGCGGTGAGGCCTGGGCAGATCGCCGAAGTGCTGGCGGCCAGCGACAGGCAGTGCCCGGTGCATATCCACATCGCCg                                                                                                          >  1:305516/1‑148 (MQ=255)                                    aaGCGCAACTCTTCCCGTTGCTGGCCGCGCAACCCGCGCAGCACCTGGGCCTGTGCTTCCACTCTCTGCGGGCGGTGAGGCCTGGGCAGATCGCCGAAGTGCTGGCGGCCAGCGACAGGCAGTGCCCGGTGCATATCCACATCGCCGaa                                                                                                        <  4:340751/149‑1 (MQ=255)                                      gcgcAACTCATCCCGTTGCTGGCCGCGCAACCCGCGCAGCACCTGCGCCTGTGCTTCCACTCTCTGCGGGCGGTGAGGCCTGGGCAGATCGCCGAAGTGCTGGCGGCCAGCGACAGGCAGTGCCCGGTGCATATCCACATCGACGaa                                                                                                        >  8:304278/1‑147 (MQ=255)                                        gcAACTCTTCCCGTTGCTGGCCGCGCAACCCGCGCAGCACCTGGGCCTGTGCTTCCACTCTCTGCGGGCGGTGAGGCCTGGGCAGATCGCCGAAGTGCTGGCGGCCAGCGACAGGCAGTGCCCGGTGCATATCCACATCGCCGAAcag                                                                                                     >  4:321490/1‑148 (MQ=255)                                         cAACTCTTCCCGTTGCTGGCCGCGCAACCCGCGAAGCACCTGGGCCTGTGCTTCCACTCTCTGCGGGCGGTGAGGCGTGGGCAGATCGCCGAAGTGCTGGCGGCAAGCGACAGGCAGTGTCCGGTGCATATCCACATCGCCGAAcagca                                                                                                   <  1:216416/149‑1 (MQ=255)                                                 cccGTTGCTGGCCGCGCAACCCGCGCAGCACCTTGGCCTGTGCTTCCACTCTCTGCGGGCGGTGAGGCCTGGGCAGATCGCCGAAGTGCTGGCGGCCAGCGACAGGCAGTGCCCGGTGCATATCCACATCGCCGAACAGCAgaagg                                                                                              <  5:270033/146‑1 (MQ=255)                                                 cccGTTGCTGGCCGCGCAACCCGCGCAGCACCTGGGCCTGTGCTTCCACTCTCTGCGGGCGGTGAGGCCTGGGCAGATCGCCGAAGTGCTGGCGGCCAGCGACAGGCAGTGCCCGGTGCATATCCACATCGCCGAACAGCAgaaggaa                                                                                            <  3:321490/148‑1 (MQ=255)                                                 cccGTTGCTGGCCGCGCAACCCGCGCAGCACCTGGGCCTGTGCTTCCACTCTCTGCGGGCGGTGAGGCCTGGGCAGATCGCCGAAGTGCTGGCGGCCAGCGACAGGCAGTGCCCGGTGCATATCCACATCGCCGAACAGCAgaaggaa                                                                                            <  7:316976/148‑1 (MQ=255)                                                   cGTTGCTGGCCGCGCAACCCGCGCAGCACCTGGGCCTGTGCTTCCACTCTCTGCGGGCGGTGAGGCCTGGGCAGATCGCCGAAGTGCTGGCGGCCAGCGACAGGCAGTGCCCGGTGCATATCCACATCGCCGAACAGCAGAAGGAAGTc                                                                                         <  1:241126/149‑1 (MQ=255)                                                     ttGCTGGCCGCGCAACCCGCGCAGCACCTGGGCCTGTGCTTCCACTCTCTGCGGGCGGTGAGGCCTGGGCAGATCGCCGAAGTGCTGGCGGCCAGCGACAGGCAGTGCCCGGTGCATATCCACATCGCCGAACAGCAGAAGGAAGTcga                                                                                       <  6:203344/149‑1 (MQ=255)                                                      cgctggccgccagcacttcggcgatctgcccaggcctcaccgcccgcagagagtggcagcacaggcccaggtgctgcgcgggttgcgaggccagcGACAGGCAGTGCCCGGTGCATATCCACATCGCCGAACAGCAGAAGGAAGTcgac                                                                                      >  6:91746‑M2/96‑149 (MQ=255)                                                         tggccgccagcacttcggcgatctgcccaggcctcaccgcccgcagagagtggaagcacaggcccaggtgctgcgcgggttgcgcggccagcGACAGGCAGTGCCCGGTGCATATCCACATCGCCGAACAGCAGAAGGAAGTCgacgac                                                                                   >  5:58120‑M2/93‑149 (MQ=255)                                                         TGGCCGCGCAACCCGCGCAGCACCTGGGCCTGTGCTTCCACTCTCTGCGGGCGGTGAGGCCTGGGCAGATCGCCGAAGTGCTGGCGGCCAGCGACAGGCAGTGCCCGGTGCATATcc                                                                                                                   >  5:198252‑M1/1‑117 (MQ=255)                                                         TGGCCGCGCAACCCGCGCAGCACCTGGGCCTGTGCTTCCACTCTCTGCGGGCGGTGAGGCCTGGGCAGATCGCCGAAGTGCTGGCGGCCAGCGACAGGCAGTGCCCGGTGCATATcc                                                                                                                   <  6:198252‑M1/117‑1 (MQ=255)                                                         TGGCCGCGCAACCCGCGCAGCACCTGGGCCTGTGCTTCCACTCTCTGCGGGCGGTGAGGCCTGGGCAGATCGCCGAAGTGCTGGCGGCCAGCGACAGGCAGTGCCCGGTGCATATCCACATCGCCGAACAGCAGAAGGAAGTCgacgac                                                                                   <  5:333878‑M1/149‑1 (MQ=255)                                                                  aaCCCGCGCAGCACCTGGGCCTGTGCTTCCACTCTCTGCGGGCGGTGAGGCCTGGGCAGATCGCCGAAGTGCTGGCGGCCAGCGACAGGCAGTGCCCGGTGCATATCCACATCGCCGAACAGCAGAAGGAAGTCGACGACTgcctggcc                                                                          >  8:224532/1‑149 (MQ=255)                                                                     ccGCGCAGCACCTGGGCCTGTGCTTCCACTCTCTGCGGGCGGTGAGGCCTGGGCAGATCGCCGAAGTGCTGGCGGCCAGCGACAGGCAGTGCCCGGTGCATATCCACATCGCCGAAc                                                                                                       <  2:127365/117‑1 (MQ=255)                                                                     ccGCGCAGCACCTGGGCCTGTGCTTCCACTCTCTGCGGGCGGTGAGGCCTGGGCAGATCGCCGAAGTGCTGGCGGCCAGCGACAGGCAGTGCCCGGTGCATATCCACATCGCCGAACAGCAGAAGGAAGTCGACGACTgcctggcctg                                                                        >  3:49051/1‑148 (MQ=255)                                                                                 gcccaggcctcaccgcccgcagagagtggaagcacaggcccaggtgctgcgcgggttgcgcggccagcGACAGGCAGTGCCCGGTGCATATCCACATCGCCGAACAGCAGAAGGAAGTCGACGACTGCCTGGCCTGGAGCGGCCTgcgc                                                           <  6:58120‑M2/81‑1 (MQ=255)                                                                                          gCTTCCACTCTGTGCGGGGGGTGAGTCCTGGGCAGAGCGCCGAAGTGCTGGCGGGCAGGGACAGGCAGTGCCCGGTGCATATCCACATCGCCGAACAGCAGAAGGAAGTCGACGACTGCCTGGCCTGGAGCGGCCTGCGCCCGCTGCAg                                                  <  7:304278/149‑1 (MQ=255)                                                                                            ttCCACTCTCTGCGGGCGGTGAGGCCTGGGCAGATCGCCGAAGTGCTGGCGGCCAGCGACAGGCAGTGCCCGGTGCATATCCACATCGCCGAACAGCAgaagg                                                                                              <  2:146928/103‑1 (MQ=255)                                                                                            ttCCACTCTCTGCGGGCGGTGAGGCCTGGGCAGATCGCCGAAGTGCTGGCGGCCAGCGACAGGCAGTGCCCGGTGCATATCCACATCGCCGAACAGCAgaagg                                                                                              >  1:146928/1‑103 (MQ=255)                                                                                            ttCCACTCTCTGCGGGCGGTGAGGCCTGGGCAGATCGCCGAAGTGCTGGCGGCCAGCGACAGGCAGTGCCCGGTGCATATCCACATCGCCGAACAGCAGAAGGAAGTCGACGACTGCCTGGCCTGGAGCGGCCTGCGCCCGCTGCAGTg                                                >  8:270235/1‑149 (MQ=255)                                                                                              ccACTCTCTGCGGGCGGTGAGGCCTGGGCAGATCGCCGAAGTGCTGGCGGCCAGCGACAGGCAGTGCCCGGTGCATATCCACATCGCCGAACAGCAGAAGGAAGTCGACGACTGCCTGGCCTGGAGCGGCCTGCGCCCGCTGCAGTgg                                               <  4:49051/148‑1 (MQ=255)                                                                                              ccACTCTCTGCGGGCGGTGAGGCCTGGGCAGATCGCCGAAGTGCTGGCGGCCAGCGACAGGCAGTGCCCGGTGCATATCCACATCGCCGAACAGCAGAAGGAAGTCGACGACTGCCTGGCCTGGAGCGGCCTGCGCCCGCTGCAGTGGc                                              >  2:140996/1‑149 (MQ=255)                                                                                                 ctctctGCGGGCGGTGAGGCCTGGGCAGATCGCCGAAGTGCTGGCGGCCAGCGACAGGCAGTGCCCGGTGCATATCCAGATCGCCGAACAGCAGAAGGAAGTCGACGACTTCCTGGCCTGGAGCTGCCTGCGCCCGCTGCAGTGGCTGt                                           <  3:330513/149‑1 (MQ=255)                                                                                                  tctctGCGGGCGGTGAGGCCTGGGCAGATCGCCGAAGTGCTGGCGGCCAGCGACAGGCAGTGCCCGGTGCATATCCACATCGCCGAACAGCAGAAGGAAGTCGACGACTGCCTGGCCTGGAGCGGc                                                                 <  5:343117/126‑1 (MQ=255)                                                                                                  tctctGCGGGCGGTGAGGCCTGGGCAGATCGCCGAAGTGCTGGCGGCCAGCGACAGGCAGTGCCCGGTGCATATCCACATCGCCGAACAGCAGAAGGAAGTCGACGACTGCCTGGCCTGGAGCGGc                                                                 >  6:343117/1‑126 (MQ=255)                                                                                                          gccggGGAGGCCTGGGCCGATCGCCGAAGCGCTGGCGGCCAGCGACAGGCAGTGCCCGGTGCATATCCACATCGCCCAACAGCAGAAGGAAGTCGACGACTGCCTGGCCTGGAGCGGCCTGCGCCCGCTGCAGTGGCTGTACGAGCacg                                  <  2:306064/147‑1 (MQ=255)                                                                                                           gcggTGAGGCCTGGGCAGATCGCCGAAGTGCTGGCGGCCAGCGACAGGCAGTGCCCGGTGCATATCCACATCGCCGAACAGCAGAAGGAAGTCGACGACTGCCTGGCCTGGAGCGGCCTGCGCCCGCTGCAGTGGCTGTACGAGCacgt                                 <  7:224532/149‑1 (MQ=255)                                                                                                                  ggCCTGGGCAGATCGCCGAAGTGCTGGCGGCCAGCGACAGGCAGTGCCCGGTGCATATCCACATCGCCGAACAGCAGAAGGAAGTCGACGACTGCCTGGCCTGGAGCGGCCTGCGCCCGCTGCAGTGGCTGTACGAGCacgtggacgtg                          <  7:270235/149‑1 (MQ=255)                                                                                                                  ggCCTGGGCAGATCGCCGAAGTGCTGGCGGCCAGCGACAGGCAGTGCCCGGTGCATATCCACATCGCCGAACAGCAGAAGGAAGTCGACGACTACCTGGCCTGGAGCGGCCTGCGCCCGCTGCAGTGGCTGTACGAGCacgtggacgtg                          >  3:365111/1‑149 (MQ=255)                                                                                                                   gCCTGGGCAGATCGCCGAAGTGCTGGCGGCCAGCGACAGGCAGTGCCCGGTGCATATCCACATCGCCGAACAGCAGAAGGAAGTc                                                                                         >  3:327677/1‑85 (MQ=255)                                                                                                                   gCCTGGGCAGATCGCCGAAGTGCTGGCGGCCAGCGACAGGCAGTGCCCGGTGCATATCCACATCGCCGAACAGCAGAAGGAAGTc                                                                                         <  4:327677/85‑1 (MQ=255)                                                                                                                   gCCTGGGCAGATCGCCGAAGTGCTGGCGGCCAGCGACAGGCAGTGCCCGGTGCATATCCACATCGCCGAACAGCAGAAGGAAGTCGACGACTGCCTGGCCTGGAGCGGCCTGCGCCCGCTGCAGTGGCTGTACGAGCacgtggacgtg                          >  5:197408/1‑148 (MQ=255)                                                                                                                      tGGGCAGATCGCCGAAGTGCTGGCGGCCAGCGACAGGCAGTGCCCGGTGCATATCCACATCGCCGAACAGCAgaagg                                                                                              >  6:199045/1‑77 (MQ=255)                                                                                                                      tGGGCAGATCGCCGAAGTGCTGGCGGCCAGCGACAGGCAGTGCCCGGTGCATATCCACATCGCCGAACAGCAgaagg                                                                                              <  5:199045/77‑1 (MQ=255)                                                                                                                         gCAGATCGCCGAAGTGCTGGCGGCCAGCGACAGGCAGTGCCCGGTGCATATCCACATCGCCGAAcag                                                                                                     <  4:161106/67‑1 (MQ=255)                                                                                                                         gCAGATCGCCGAAGTGCTGGCGGCCAGCGACAGGCAGTGCCCGGTGCATATCCACATCGCCGAAcag                                                                                                     >  3:161106/1‑67 (MQ=255)                                                                                                                                gCCGAAGTGCTGGCGGCCAGCGACAGGCAGTGCCCGGTGCATATCCACATCGCCGAACAGCAGAAGGAAGTCGACGACTACCTGGCCTGGAGCGGCCTGCGCCCGCTGCAGTGGCTGTACGAGCACGTGGACGTGGACCGCCGCTGGt             <  4:365111/148‑1 (MQ=255)                                                                                                                                 ccGAAGTGCTGGCGGCCAGCGACAGGCAGTGCCCGGTGCATATCCACATCGCCGAACAGCAGAAGGAAGTCGACGACTGCCTGGCCTGGAGCGGCCTGCGCCCGCTGCAGTGGCTGTACGAGCACGTGGACGTGGACCGCCGCTGGTGc           <  2:305516/149‑1 (MQ=255)                                                                                                                                          tGGCGGCCAGCGACAGGCAGTGCCCGGTGCATATCCACATCGCCGAACAGCAGAAGGAAGTCGACGACTGCCTGGCCTGGAGCGGCCTGCGCCCGCTGCAGTGGCTGTACGAGCACGTGGACGTGGACCGCCGCt                >  4:330196/1‑135 (MQ=255)                                                                                                                                          tGGCGGCCAGCGACAGGCAGTGCCCGGTGCATATCCACATCGCCGAACAGCAGAAGGAAGTCGACGACTGCCTGGCCTGGAGCGGCCTGCGCCCGCTGCAGTGGCTGTACGAGCACGTGGACGTGGACCGCCGCt                <  3:330196/135‑1 (MQ=255)                                                                                                                                            gcggccagcGACAGGCAGTGCCCGGTGCATATCCACATCGCCGAACAGCAGAAGGAAGTCGACGACTGCCTGGCCTGGAGCGGCCTGCGCCCGCTGCAGTGGCTGTACGAGCACGTGGACGTGGACCGCCGCTGGTGCCTGGTacac  <  4:206816‑M2/138‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                          CTTCATCAACTCCACTGAACAGTACCTGCAACTGCAAGCGCAACTCTTCCCGTTGCTGGCCGCGCAACCCGCGCAGCACCTGGGCCTGTGCTTCCACTCTCTGCGGGCGGTGAGGCCTGGGCAGATCGCCGAAGTGCTGGCGGCCAGCGACAGGCAGTGCCCGGTGCATATCCACATCGCCGAACAGCAGAAGGAAGTCGACGACTGCCTGGCCTGGAGCGGCCTGCGCCCGCTGCAGTGGCTGTACGAGCACGTGGACGTGGACCGCCGCTGGTGCCTGGTACAC  >  NC_002947/5739595‑5739880

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.