New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5940404	58 (0.980)	3 (0.050)	3/248	NT	5.4%	coding (243/1113 nt)	yhhJ	translation‑like protein
	?	NC_002947	= 5940433	50 (0.900)					coding (272/1113 nt)	yhhJ	translation‑like protein

ATGCCTTCAGCGTGGCGATCTACATGCCGGCAGCCGGCTCGGTGATCGGCGTACACAACGCCAGCGTGGCGGTGGTGGATGAAGACCATAGCCTGCTCTCGCGCAAGCTCAGCGAAGCCCTGCAACCGCCCGAGTTCCAGCCAGCCGTGCCGCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5940250‑5940404 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccgctgTCCATGGCCTGGTCCAGGCGCTGCGGAGGCAGCGGCACGGCTGGCTGGAACTCGGGCGGTTGCAGGGCTTCGCTGAGCTTGCGCGAGAGCAGGCTATGGTCTTCATCCACCACCGCCACGCTGGCGTTGTGTACGCCGAT  <  NC_002947/5940433‑5940294                                                                                                                                                                                                                                                                                                         ATGCCTTCAGCGTGGCGATCTACATGCCGGCAGCCGGCTCGGTGATCGGCGTACACAACGCCAGCGTGGCGGTGGTGGATGAAGACCATAGCCTGCTCTCGCGCAAGCTCAGCGAAGCCCTGCAACCGCCCGAGTTCCAGCCAGCCGTG                                                                                                                                                    >  2:229765/1‑149   GCCTTCAGCGTGGCGATCTACATGCCGGCAGCCGGCTCGGTGATCGGCGTACACAACGCCAGCGTGGCGGTGGTGGATGAAGACCATAGCCTGCTCTCGCGCAAGCTCAGCGAAGCCCTGCAACCGCCCGAGTTCCAGCCAGCCGTGCC                                                                                                                                                  >  7:161981/1‑149     CTTCAGCGTGGCGATCTACATGCCGGCAGCCGGCTCGGTGATCGGCGTACACAACGCCAGCGTGGCGGTGGTGGATGAAGACCATAGCCTGCTCTCGCGCAAGCTCAGCGAAGCCCTGCAACCGCCCGAGTTCCAGCCAGCCGTGCCGC                                                                                                                                                <  8:161981/149‑1                                         GGTGATCGGCGTACACAACGCCAGCGTGGCGGTGGTGGATGAAGACCATAGCCTGCTCTCGCGCAAGCTCAGCGAAGCCCTGCAACCGCCCGAGTTCCAGCCAGCCGTGCCGCTGTCCATGGCCTGGTCCAGGCGCTGCGGAGGCAGC                                                                                                             <  8:1903/148‑1                                                          ACGCCAGCGTGGCGGTGGTGGATGAAGACCATAGCCTGCTCTCGCGCAAGCTCAGCGAAGCCCTGCAACCGCCCGAGTTCCAGCCAGCCGTGCCGCT                                                                                                                                               >  3:216973/1‑97                                                          ACGCCAGCGTGGCGGTGGTGGATGAAGACCATAGCCTGCTCTCGCGCAAGCTCAGCGAAGCCCTGCAACCGCCCGAGTTCCAGCCAGCCGTGCCGCT                                                                                                                                               <  4:216973/97‑1                                                                             GGATGAAGACCATAGCCTGCTCTCGCGCAAGCTCAGCGAAGCCCTGCAACCGCCCGAGTTCCAGCCAGCCGTGCCGCTGTCCATGGCCTGGTCCAGGCGCTGCGGAGGCAGCGGCACGGCTG                                                                                                   <  3:279917/122‑1                                                                             GGATGAAGACCATAGCCTGCTCTCGCGCAAGCTCAGCGAAGCCCTGCAACCGCCCGAGTTCCAGCCAGCCGTGCCGCTGTCCATGGCCTGGTCCAGGCGCTGCGGAGGCAGCGGCACGGCTG                                                                                                   >  4:279917/1‑122                                                                                                                                                     GCCGCTTTCCATGGCCTGGTCCAGGCGCTGCGGAGGCAGCGGCACGGCTGGCTGGAACTCGGGCGGTTGCAGGGCTTCGCTGAGCTTGCGCGAGAGCAGGCTATGGTCTTCATCCACCACCGCCACGCTGGCGTTGTGTACGCCGAT  <  4:295940/147‑1                                                                                                                                                       CGCTGTCCATGGCCTGGTCCAGGCGCTGCGGAGGCAGCGGCACGGCTGGCTGGAACTCGGGCGGTTGCAGGGCTTCGCTGAGCTTGCGCGAGAGCAGGCTATGGTCTTCATCCACCACCGCCACGCT                    <  3:117861/127‑1                                                                                                                                                       CGCTGTCCATGGCCTGGTCCAGGCGCTGCGGAGGCAGCGGCACGGCTGGCTGGAACTCGGGCGGTTGCAGGGCTTCGCTGAGCTTGCGCGAGAGCAGGCTATGGTCTTCATCCACCACCGCCACGCT                    >  4:117861/1‑127                                                                                                                                                                                                                                                                                                         ATGCCTTCAGCGTGGCGATCTACATGCCGGCAGCCGGCTCGGTGATCGGCGTACACAACGCCAGCGTGGCGGTGGTGGATGAAGACCATAGCCTGCTCTCGCGCAAGCTCAGCGAAGCCCTGCAACCGCCCGAGTTCCAGCCAGCCGTGCCGCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5940250‑5940404 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccgctgTCCATGGCCTGGTCCAGGCGCTGCGGAGGCAGCGGCACGGCTGGCTGGAACTCGGGCGGTTGCAGGGCTTCGCTGAGCTTGCGCGAGAGCAGGCTATGGTCTTCATCCACCACCGCCACGCTGGCGTTGTGTACGCCGAT  <  NC_002947/5940433‑5940294

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.