New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5978244 =	63 (1.070)	3 (0.060)	3/242	NT	5.2%	coding (873/993 nt)	PP_5241	LuxR family transcriptional regulator
	?	NC_002947	5978305 =	52 (0.960)					coding (812/993 nt)	PP_5241	LuxR family transcriptional regulator

CCCGGGCCGTGGCCGAAGGCCACAAGTGGCTGCAGGCGCGGCA‑GGTCGAGGAAAAGTACCAGCGCCTGACTCAGCGTGAGCGCCAGGTCTTCTCGCTGGTGGTAGGCGGCTTGTCGCACAAGCAGATCGCCAGGCAGATCGGCACCAGCGAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5978395‑5978244 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑caccagcgagAAGACCTGGCGCTCACGCTGAGTCAGGCGCTGGTACTTTTCCTCGACCTGCCGCGCCTGCAGCCACTTGTGGCCTTCGGCCACGGCCCGGGCGCGCACTGTCTGCAACAGGGTCAGCAACTGGTCTTCATCGAACGGCTTGGT  >  NC_002947/5978305‑5978447                                                                                                                                                                                                                                                                                                          CCCGGGCCGTGGCCGAAGGCCACAAGTGGCTGCAGGCGCGGCA‑GGTCGAGGAAAAGTACCAGCGCCTGACTCAGCGTGAGCGCCAGGTCTTCTCGCTGGTGGTAGGCGGCTTGTCGCACAAGCAGATCGCCAGGCAGATCGGCACCAGC                                                                                                                                                    >  7:338604/1‑149  CCGGGCCGTGGCCGAAGGCCACAAGTGGCTGCAGGCGCGGCAGGGTCGAGGAAAAGTACCAGCGCCTGACTCAGCGTGAGCGCCAGGTCTTCTCGCTGGTGGTAGGCGGCTTGTCGCACAAGCAGATCGCCAGGCAGATCGGCACCAGC                                                                                                                                                    >  1:77496/1‑149  CCGGGCCGTGGCCGAAGGCCACAAGTGGCTGCAGGCGCGGCA‑GGTCGAGGAAAAGTACCAGCGCCTGACTCAGCGTGAGCGCCAGGTCTTCTCGCTGGTGGTAGGCGGCTTGTCGCACAAGCAGATCGCCAGGCAGATCGGCACCAGCG                                                                                                                                                   >  3:263233/1‑149                                                                                            TCTCGCTGGTGGTAGGCGGCTTGTCGCACAAGCAGATCGCCAGGCAGATCGGCACCAGCGAGAAGACCTGGCGCTCACGCTGAGTCAGGCGCTGGTACTTTTCCTCGACCTGCCGCGCCTGCAGCCACTTGTGGCCTTCGGCCACGGCC                                                          >  7:184650/1‑149                                                                                              TCGCTGGTGGTAGGCGGCTTGTCGCACAAGCAGATCGCCAGGCAGATCGGCACCAGCGAGAAGACCTGGCGCTCACGCTGAGTCAGGCGCTGGTACTTTTCCTCGACCTGCCGCGCCTGCAGCCACTTGTG                                                                          >  7:42132/1‑131                                                                                              TCGCTGGTGGTAGGCGGCTTGTCGCACAAGCAGATCGCCAGGCAGATCGGCACCAGCGAGAAGACCTGGCGCTCACGCTGAGTCAGGCGCTGGTACTTTTCCTCGACCTGCCGCGCCTGCAGCCACTTGTG                                                                          <  8:42132/131‑1                                                                                                                                            ctaGCACCAGCGAGAAGACCTGGCGCTCACGCTGATTGAGGCGCTGGTAGTTTTCCTCGACCTGCCGCGCCTGCAGCCAGTTGTGGCCTTAGGCGACTGCCCGTGC                                                     <  2:107557/103‑1                                                                                                                                               GCACCAGCGAGAAGACCTGGCGCTCACGCTGAGTCAGGCGCTGGTACTTTTCCTCGACCTGCCGCGCCTGCAGCCACTTGTGGCCTTCGGCCACGGCCCGGGCGCGCACTGTCTGCAACAGGGTCAGCAACTGGTCTTCATCGAACGGC       <  8:184650/149‑1                                                                                                                                                CACCAGCGAGAAGACCTGGCGCTCACGCTGAGTCAGGCGCTGGTACTTTTCCTCGACCTGCCGCGCCTGCAGCCACTTGTGGCCTTCGGCCACGGCCCGGGCGCGCACTGTCTGCAACAGGGTCAGCAACTGGTCTTCATCGAACGGCT      >  8:243060/1‑149                                                                                                                                                 ACCAGCGAGAAGACCTGGCGCTCACGCTGAGTCAGGCGCTGGTACTTTTCCTCGACCTGCCGCGCCTGCAGCCACTTGTGGCCTTCGGCCACGGCCCGGGCGCGCACTGTCTGCAACAGGGTCAGCAACTGGTCTTCATCGAACGGCTT     >  6:94382/1‑149                                                                                                                                                  CCAGCGAGAAGACCTGGCGCTCACGCTGAGTCAGGCGCTGGTACTTTTCCTCGACCTGCCGCGCCTGCAGCCACTTGTGGCCTTCGGCCACGGCCCGGGCGCGCACTGTCTGCAACAGGGTCAGCAACTGGTCTTCATCGAACGGCTTG    >  7:29226/1‑149                                                                                                                                                     GCGAGAAGACCTGGCGCTCACGCTGAGTCAGGCGCTGGTACTTTTCCTCGACCTGCCGCGCCTGCAGCCACTTGTGGCCTTCGGCCACGGCCCGGGCGCGCACTGTCTGCAACAGGGTCAGCAACTGGTCTTCATCGAACGGCTTGGT  >  2:295872/1‑148                                                                                                                                                                                                                                                                                                          CCCGGGCCGTGGCCGAAGGCCACAAGTGGCTGCAGGCGCGGCA‑GGTCGAGGAAAAGTACCAGCGCCTGACTCAGCGTGAGCGCCAGGTCTTCTCGCTGGTGGTAGGCGGCTTGTCGCACAAGCAGATCGCCAGGCAGATCGGCACCAGCGAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5978395‑5978244 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑caccagcgagAAGACCTGGCGCTCACGCTGAGTCAGGCGCTGGTACTTTTCCTCGACCTGCCGCGCCTGCAGCCACTTGTGGCCTTCGGCCACGGCCCGGGCGCGCACTGTCTGCAACAGGGTCAGCAACTGGTCTTCATCGAACGGCTTGGT  >  NC_002947/5978305‑5978447

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.