New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	6062121 =	37 (0.630)	3 (0.050)	3/256	NT	6.2%	coding (583/1149 nt)	alkT	rubredoxin‑NAD(+) reductase
	?	NC_002947	6062168 =	55 (0.960)					coding (536/1149 nt)	alkT	rubredoxin‑NAD(+) reductase

GTGTACTGATCCTCGGTGCCGGCCTGATCGGCTGCGAATTCGCAAACGACATGAGCCTGGGCGGCTTCAAGGTCGACGTTGTGGCGCCGTGTGAACAGATCATGCCGACCCTGCTGCACCCGGCCGCTGCGGCGGCTGTGCAGGGTGGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/6062270‑6062121 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcATGATCTGTTCACACGGCGCCACAACGTCGACCTTGAAGCCGCCCAGGCTCATGTCGTTTGCGAATTCGCAGCCGATCAGGCCGGCACCGAGGATCAGTACACGCTGCTTGCCAGCGGCGGCAGCACGGAAGCGTGCGTAGTCTTCCA  >  NC_002947/6062168‑6062315                                                                                                                                                                                                                                                                                                            GTGTACTGATCCTCGGTGCCGGCCTGATCGGCTGCGAATTCGCAAACGACATGAGCCTGGGCGGCTTCAAGGTCGACGTTGTGGCGCCGTGTGAACAGATCATGCCGACCCTGCTGCACCCGGCCGCTGCGGCGGCTGTGCAGGGTGGG                                                                                                                                                       <  8:186481/149‑1                                                    TGAGCCTGGGCGGCTTCAAGGTCGACGTTGTGGCGCCGTGTGAACAGATCATGCCGACCCTGCTGCACCCGGCCGCTGCGGCGGCTGTGCAGGGTGGGC                                                                                                                                                      <  7:184485/99‑1                                                    TGAGCCTGGGCGGCTTCAAGGTCGACGTTGTGGCGCCGTGTGAACAGATCATGCCGACCCTGCTGCACCCGGCCGCTGCGGCGGCTGTGCAGGGTGGGC                                                                                                                                                      >  8:184485/1‑99                                                                                                   ATCATGCCGACCCTGCTGCACCCGGCCGCTGCGGCGGCTGTGCAGGGTGGGCATGATCTGTTCACACGGCGCCACAACGTCGACCTTGAAGCCGCCCAGGCTCATGTCGTTTGCGAATTCGCAGCCGATCAGGCCGGCACCGAGGAT                                                       >  1:83686/1‑147                                                                                                        GCCGACCCTGCTGCACCCGGCCGCTGCGGCGGCTGTGCAGGGTGGGCATGATCTGTTCACACGGCGCCACAACGTCGACCTTGAAGCCGCCCAGGCTCATGTCGTTTGCGAATTCGCAGCCGAT                                                                         >  3:288150/1‑124                                                                                                        GCCGACCCTGCTGCACCCGGCCGCTGCGGCGGCTGTGCAGGGTGGGCATGATCTGTTCACACGGCGCCACAACGTCGACCTTGAAGCCGCCCAGGCTCATGTCGTTTGCGAATTCGCAGCCGAT                                                                         <  4:288150/124‑1                                                                                                                                                      CATGATCTGTTCACACGGCGCCACAACGTCGACCTTGAAGCCGCCCAGGCTCATGTCGTTTGCGAATTCGCAGCCGATCAGGCCGGCACCGAGGATCAGTACACGCTGCTTGCCAGCGGCGGCAGCACGGAAGCGTGCGTAGTCTTCCA  <  5:320920/149‑1                                                                                                                                                                                                                                                                                                            GTGTACTGATCCTCGGTGCCGGCCTGATCGGCTGCGAATTCGCAAACGACATGAGCCTGGGCGGCTTCAAGGTCGACGTTGTGGCGCCGTGTGAACAGATCATGCCGACCCTGCTGCACCCGGCCGCTGCGGCGGCTGTGCAGGGTGGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/6062270‑6062121 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcATGATCTGTTCACACGGCGCCACAACGTCGACCTTGAAGCCGCCCAGGCTCATGTCGTTTGCGAATTCGCAGCCGATCAGGCCGGCACCGAGGATCAGTACACGCTGCTTGCCAGCGGCGGCAGCACGGAAGCGTGCGTAGTCTTCCA  >  NC_002947/6062168‑6062315

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.