New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	6062121 =	37 (0.630)	3 (0.050)	3/256	NT	6.2%	coding (583/1149 nt)	alkT	rubredoxin‑NAD(+) reductase
	?	NC_002947	6062168 =	55 (0.960)					coding (536/1149 nt)	alkT	rubredoxin‑NAD(+) reductase

TCGGTACGTGGGCGCAGGCCGATGGCCGAAACCACCAGGTCGCAGGCGATCACGCTGCCGTCCGACAAGTGCGCCTCCAGGCCTTGAGTCACCTGCTGAAGACGGGTCAGC‑ACCGGCCCCAGGTGGAAGCGTACACCCAGGCCCTCCAGCCCACCCTGCACAGCCGCCGCAGCGGCCGGGTGCAGCAGGGTCGGCATGATCTGTTCACACGGCGCCACAACGTCGACCTTGAAGCCGCCCAGGCTCATGTCGTTTGCGAATTCGCAGCCGATCAGGCCGGCACCGAGGATCAGT  >  NC_002947/6061973‑6062266                                                                                                                                                      |                                                                                                                                                  tCGGTACGTGGGCGCAGGCCGATGTCCGAAACCACCAGTTCGCAGGCGATCTCGCTGCCGTCCGACAAGTGCGCCTCCAGGCCTTGAGTCACCTGCTGAAGACGGGTCAGC‑ACCGGCCCCAGGTGGAAGCGTACACCCAGGCCCTCCAg                                                                                                                                                   <  5:53016/149‑1 (MQ=255)  tggaagactacgcacgcttccgtgctgccgccgctggcaagcagcgtgtactgatcctcggtgccggcctgatcggctgcgaattcgcaaacgacatgagcctgggcggcttcaaggtcgacgttgtggcgccgtgtgaacagatcatg                                                                                                                                                   <  5:320920‑M1/1‑1 (MQ=255)    gTACGTGGGCGCAGGCCGATGGCCGAAACCACCAGGTCGCAGGCGATCACGCTGCCGTCCGACAAGTGCGCCTCCAGGCCTTGAGTCACCTGCTGAAGACGGGTCAGC‑ACCGGCCCCAGGTGGAAGCGTACACCCAGGCCCTCCAGcc                                                                                                                                                 >  7:235228/1‑148 (MQ=255)                    cGATGGCCGAAACCACCAGGTCGCAGGCGATCACGCTGCCGTCCGACAAGTGCGCCTCCAGGCCTTGAGTCACCTGCTGAAGACGGGTCAGCAACCGGCCCCAGGTGGAAGCGTACACCCAGGCCCTCCAGCCCACCCTGCACAgccgc                                                                                                                                 <  1:101890/149‑1 (MQ=255)                    cGATGGCCGAAACCACCAGGTAGCAGGCGATCACGCTGCCGTCCGACAAGTGCGCCTCCAGGCCTTGAGTCACCTGCTGAAGACGGGTCAGC‑ACCGGCCCCAGGTGGAAGCGTACACCCAGGCCCTCCAGCCCACCCTGCACAgccgcc                                                                                                                                >  4:193217/1‑149 (MQ=255)                         gCCGAAACCACCAGGTCGCAGGCGATCACGCTGCCGTCCGACAAGTGCGCCTCCAGGCCTTGAGTCACCTGCTGAAGACGGGTCAGC‑ACCGGCCCCAGGTGGAAGCGTACACCCAGGCCCTCCAGCCCACCCTGCACAGCCGCCGCAGc                                                                                                                           >  6:114287/1‑149 (MQ=255)                         gCCGAAACCACCAGGTCGCAGGCGATCACGCTGCCGTCCGACAAGTGCGCCTCCAGGCCTTGAGTCACCTGCTGAAGACGGGTCAGC‑ACCGGCCCCAGGTGGAAGCGTACACCCAGGCCCTCCAGCCCACCCTGCACAGCCGCCGCAGc                                                                                                                           <  8:127900/149‑1 (MQ=255)                                 caccaGGTCGCAGGCGATCACGCTGCCGTCCGACAAGTGCGCCTCCAGGCCTTGAGTCACCTGCTGAAGACGGGTCAGC‑ACCGGCCCCAGGTGGAAGCGTACACCCAGGCCCTCCAGCCCACCCTGCACAGCCGCCGCAGCGGCCGGGt                                                                                                                   <  2:193954/149‑1 (MQ=255)                                  accaGGTCGCCGGCGATCACGCTGCCGTCCGACAAGTGCGCCTCCAGGCCTTGAGGCACCTGCTGAAGCCGGGGCAGC‑CCCGGCCCCAGGTGGCAGCGTACACCCAGGCCCTCCAGCCCCCCCTGCACCGCCGCCGCAGCGGCCGGGTg                                                                                                                  >  7:328842/1‑149 (MQ=255)                                   ccaGGTCGCAGGCGATCACGCTGCCGTCCGACAAGTGCGCCTCCAGGCCTTGAGTCACCTGCTGAAGACGGGTCAGC‑ACCGGCCCCAGGTGGAAGCGTACACCCAGGCCCTCCAGCCCACCCTGCACAGCCGCCGCAGCGGCCGGGTgc                                                                                                                 <  7:29027/149‑1 (MQ=255)                                        tCGCAGGCGATCACGCTGCCGTCCGACAAGTGCGCCTCCAGGCCTTGAGTCACCTGCTGAAGACGGGTCAGC‑ACCGGCCCCAGGTGGAAGCGTACACCCAGGCCCTCCAGCCCACCCTGCACAGCCGCCGCAGCGGCCGGGTGcagcag                                                                                                            <  3:146907/149‑1 (MQ=255)                                            aGGCGATAACGCTGCCGTCCGACAAGTGCGCCTCCAGGCCTTGAGTCACCTGCTGAAGACGGGTCAGC‑ACCGGCCCCAGGTGGAAGCGTACACCCAGGCCCTCCAGCCCACCCTGCACAGCCGCCGCAGCGGCCGGGTGCAGCAGGGTc                                                                                                        <  7:155361/149‑1 (MQ=255)                                               cGATCACGCTGCCGTCCGACAAGTGCGCCTCCAGGCCTTGAGTCACCTGCTGAAGACGGGTCAGC‑ACCGGCCCCAGGTGGAAGCGTACACCCAGGCCCTCCAGCCCACCCTGCACAGCCGCCGCAGCGGCCGGGTGCAGCAGGGTCGGc                                                                                                     <  5:135223/149‑1 (MQ=255)                                                gATCACGCTGCCGTCCGACAAGTGCGCCTCCAGGCCTTGAGTCACCTGCTGAAGACGGGTCAGC‑ACCGGCCCCAGGTGGAAGCGTACACCCAGGCCCTCCAGCCCACCCTGCACAGCCGCCGCAGCGGCCGGGTGCAGCAGGGTCGGCa                                                                                                    <  1:184805/149‑1 (MQ=255)                                                  tCACGCTGCCGTCCGACAAGTGCGCCTCCAGGCCTTGAGTCACCTGCTGAAGACGGGTCAGC‑ACCGGCCCCAGGTGGAAGCGTACACCCAGGCCCTCCAGCCCACCCTGCACAGCCGCCGCAGCGGCCGGGTGCAGCAGGGTCGGCAt                                                                                                   >  1:263244/1‑148 (MQ=255)                                                    aCGCTGCCGTCCGACAAGTGCGCCTCCAGGCCTTGAGTCACCTGCTGAAGACGGGTCAGC‑ACCGGCCCCAGGTGGAAGCGTACACCCAGGCCCTCCAGCCCACCCTGCACAGCCGCCGCAGCGGCCGGGTGCAGCAGGGTCGGCATGa                                                                                                 <  2:159378/148‑1 (MQ=255)                                                       atcctcggtgccggcctgatcggctgcgaattcgcaaacgacatgagcctgggcggcttcaaggtcgacgttgtggcgccgtgtgaacagatcatGCCCACCCTGCACAGCCGCCGCAGCGGCCGGGTGCAGCAGGGTCGGCATGAt                                                                                                >  1:83686‑M1/96‑147 (MQ=255)                                                                gACAAGTGCGCCTCCAGGCCTTGAGTCACCTGCTGAAGACGGGTCAGC‑ACCGGCCCCAGGTGGAAGCGTACCCCCAGGCCCTCCAGCCCACCCTGCACAGCCGCCGCAGCGGCCGGGTGCAGCAGGGTCGGCATGATCTGTTCACACgg                                                                                    >  2:62284/1‑149 (MQ=255)                                                                 aCAAGTGCGCCTCCAGGCCTTGAGTCACCTGCTGAAGACGGGTCAGC‑ACCGGCCCCAGGTGGAAGCGTACACCCAGGCCCTCCAGCCCACCCTGCACAGCCGCCGCAGCGGCCGGGTGCAGCAGGGTCGGCATGATCTGTTCACACGgc                                                                                   <  5:194935/149‑1 (MQ=255)                                                                   aaGTGCGCCTCCAGGCCTTGAGTCACCTGCTGAAGACGGGTCAGC‑ACCGGCCCCAGGTGGAAGCGTACACCCAGGCCCTCCAGCCCACCCTGCACAGCCGCCGCAGCGGCCGGGTGCAGCAGGGTCGGCATGATCTGTTCACACGgcgc                                                                                 <  4:204969/149‑1 (MQ=255)                                                                         atcggctgcgaattcgcaaacgacatgagcctgggcggcttcaaggtcgacgttgtggcgccgtgtgaacagatcatGCCCACCCTGCACAGCCGCCGCAGCGGCCGGGTGCAGCAGGGTCGGc                                                                                                     >  3:288150‑M1/78‑124 (MQ=255)                                                                         atcggctgcgaattcgcaaacgacatgagcctgggcggcttcaaggtcgacgttgtggcgccgtgtgaacagatcatGCCCACCCTGCACAGCCGCCGCAGCGGCCGGGTGCAGCAGGGTCGGc                                                                                                     <  4:288150‑M1/47‑1 (MQ=255)                                                                               aGGCCTTGAGTCACCTGCTGAAGACGGGTCAGC‑ACCGGCCCCAGGTGGAAGCGTACACCCAGGCCCTCCAGCCCACCCTGCACAGCCGCCGCAGCGGCCGGGTGCAGCAGGGTCGGCATGATCTGTTCACACGGCGCCACAACGTCGAc                                                                     <  3:193217/149‑1 (MQ=255)                                                                                ggCCTTGAGTCACCTGCTGAAGACGGGTCAGC‑ACCGGCCCCAGGTGGAAGCGTACACCCAGGCCCTCCAGCCCACCCTGCACAGCCGCCGCAGCGGCCGGGTGCAGCAGGGTCGGCATGATCTGTTCACACGGCGCCACAACGTCGAcc                                                                    >  5:62758/1‑149 (MQ=255)                                                                                   cTTGAGTCACCTGCTGAAGACGGGTCAGC‑ACCGGCCCCAGGTGGAAGCGTACACCCAGGCCCTCCAGCCCACCCTGCACAGCCGCCGCAGCGGCCGGGTGCAGCAGGGTCGGCATGATCTGTTCACACGGCGCCACAACGTCGACCTTg                                                                 <  5:39122/149‑1 (MQ=255)                                                                                       aGTTACCTGCTGAAGACGGGTCAGC‑ACCGGCCCCAGGTGGAAGCGTACACCCAGGCCCTCCAGCCCACCCTGCACAGCCGCCGCAGCGGCCGGGTGCAGCAGGGTCGGCATGATCTGTTCACACGGCGCCACAACGTCGACCTTGAAg                                                              <  3:4178/148‑1 (MQ=255)                                                                                          cACCTGCTGAAGACGGGTCAGC‑ACCGGCCCCAGGTGGAAGCGTACACCCAGGCCCTCCAGCCCACACTGCACAGCCGCCGCAGCGGCCGGGTGCAGCAGGGTCGGCATGATCTGTTCACACGGCGCCACAACGTCGACCTTGAAgccgc                                                          >  5:92598/1‑149 (MQ=255)                                                                                              tgctgAAGACGGGTCAGC‑ACCGGCCCCAGGTGGAAGCGTACACCCAGGCCCTCCAGCCCACCCTGCACAGCCGCCGCAGCGGCCGGGTGCAGCAGGGTCGGCATGATCTGTTCACACGGCGCCACAACGTCGACCTTGAAGCCGCCCAg                                                      >  5:213392/1‑149 (MQ=255)                                                                                                ctgAAGACGGGTCAGC‑ACCGGCCCCAGGTGGAAGCGTACACCCAGGCCCTCCAGCCCACCCTGCACAGCCGCCGCAGCGGCCGGGTGCAGCAGGGTCGGCATGATCTGTTCACACGGCGCCACAACGTCGACCTTGAAGCCGCCCAGGc                                                    >  2:245537/1‑149 (MQ=255)                                                                                                    aGACGGGTCAGC‑ACCGGCCCCAGGTGGAAGCGTACACCCAGGCCCTCCAGCCCACCCTGCACAGCCGCCGCAGCGGCCGGGTGCAGCAGGGTCGGCATGATCTGTTCACACGGCGCCACAACGTCGACCTTGAAGCCGCCCAGGCTCAt                                                <  5:114287/149‑1 (MQ=255)                                                                                                           tCAGC‑ACCGGCCCCAGGTGGAAGCGTACACCCAGGCCCTCCAGCCCACCCTGCACAGCCGCCGCAGCGGCCGGGTGCAGCAGGGTCGGCATGATCTGTTCACACGGCGCCACAACGTCGACCTTGAAGCCGCCCAGGCTCATGTCGttt                                         >  2:349474/1‑149 (MQ=255)                                                                                                           tCAGC‑ACCGGCCCCAGGTGGAAGCGTACACCCAGGCCCTCCAGCCCACCCTGCACAGCCGCCGCAGCGGCCGGGTGCAGCAGGGTCGGCATGATCTGTTCACACGGCGCCACAACGTCGACCTTGAAGCCGCCCAGGCTCATGTCGttt                                         >  6:160412/1‑149 (MQ=255)                                                                                                           tCAGC‑ACCGGCCCCAGGTGGAAGCGTACACCCAGGCCCTCCAGCCCACCCTGCACAGCCGCCGCAGCGGCCGGGTGCAGCAGGGTCGGCATGATCTGTTCACACGGCGCCACAACGTCGACCTTGAAGCCGCCCAGGCTCATGTCGttt                                         >  5:46012/1‑149 (MQ=255)                                                                                                             ggC‑ACCGGCCCCAGGTGGAAGCGTACACCCAGGCCCTCCAGCCCACCCTGCACAGCCGCCGCAGCGGCCGGGTGCAGCAGGGTCGGCATGATCTGTTCACACGGCGCCACAACGTCGACCTTGAAGCCGCCCAGGCTCATGTCGttt                                         >  2:334791/2‑147 (MQ=255)                                                                                                                     gCCCCAGGTGGAAGCGTACACCCAGGCCCTCCAGCCCACCCTGCACAGCCGCCGCAGCGGCCGGGTGCAGCAGGGTCGGCATGATCTGTTCACACGGCGCCACAACGTCGACCTTGAAGCCGCCCAGGCTCATGTCGTTTGCGAATTCg                                >  8:296625/1‑149 (MQ=255)                                                                                                                      ccccAGGTGGAAGCGTACACCCAGGCCCTCCAGCCCACCCTGCACAGCCGCCGCAGCGGCCGGGTGCAGCAGGGTCGGCATGATCTGTTCACACGGCGCCACAACGTCGACCTTGAAGCCGCCCAGGCTCATGTCGTTTGCGAATTCGc                               <  6:62758/149‑1 (MQ=255)                                                                                                                             tGGAAGCGTACACCCAGGCCCTCCAGCCCACCCTGCACAGCCGCCGCAGCGGCCGGGTGCAGCAGGGTCGGCATGATCTGTTCACACGGCGCCACAACGTCGACCTTGAAGCCGCCCAGGCTCATGTCGTTTGCGAATTCGCAGCCGAt                        <  1:245537/149‑1 (MQ=255)                                                                                                                               gAAGCGTACACCCAGGCCCTCCAGCCCACCCTGCACAGCCGCCGCAGCGGCCGGGTGCAGCAGGGTCGGCATGATCTGTTCACACGGCGCCACAACGTCGACCTTGAAGCCGCCCAGGCTCATGTCGTTTGCGAATTCGCAGCCGATc                       <  1:326947/148‑1 (MQ=255)                                                                                                                                          ccAGGCCCTCCAGCCCACCCTGCACAGCCGCCGCAGCGGCCGGGTGCAGCAGGGTCGGCATGATCTGTTCACACGGCGCCACAACGTCGACCTTGAAGCCGCCCAGGCTCATGTCGTTTGCGAATTCGCAGCCGATCAGGCCGGCAcc            >  6:132909/1‑148 (MQ=255)                                                                                                                                            aGGCCCTCCAGCCCACCCTGCACAGCCGCCGCAGCGGCCGGGTGCAGCAGGGTCGGCATGATCTGTTCACACGGCGCCACAACGTCGACCTTGAAGCCGCCCAGGCTCATGTCGTTTGCGAATTCGCAGCCGATCAGGCCGGCACCGAg         >  6:360722/1‑149 (MQ=255)                                                                                                                                             ggCCCTCCAGCCCACCCTGCACAGCCGCCGCAGCGGCCGGGTGCAGCAGGGTCGGCATGATCTGTTCACACGGCGCCACAACGTCGACCTTGAAGCCGCCCAGGCTCATGTCGTTTGCGAATTCGCAGCCGATCAGGCCGGCACCGAgg        <  1:62284/149‑1 (MQ=255)                                                                                                                                              gCCCTCCAGCCCACCCTGCACAGCCGCCGCAGCGGCCGGGTGCAGCAGGGTCGGCATGATCTGTTCACACGGCGCCACAACGTCGACCTTGAAGCCGCCCAGGCTCATGTCGTTTGCGAATTCGCAGCCGATCAGGCCGGCACCGAGGa       <  7:296625/149‑1 (MQ=255)                                                                                                                                               cccTCCAGCCCACCCTGCACAGCCGCCGCAGCGGCCGGGTGCAGCAGGGTCGGCATGATCTGTTCACACGGCGCAACAACGTCGACCTTGAAGCCGCCCAGGCTCATGTCGTTTGCGAATTCGCAGCCGATCAGGCCGGCACCGAGGa       >  6:269087/1‑148 (MQ=255)                                                                                                                                                  tCCAGCCCACCCTGCACAGCCGCCGCAGCGGCCGGGTGCAGCAGGGTCGGCATGATCTGTTCACACGGCGCCACAACGTCGACCTTGAAGCCGCCCAGGCTCATGTCGTTTGCGAATTCGCAGCCGATCAGGCCGGCACCGAGGATCAg   >  6:320920/1‑149 (MQ=255)                                                                                                                                                  tCCAGCCCACCCTGCACAGCCGCCGCAGCGGCCGGGTGCAGCAGGGTCGGCATGATCTGTTCACACGGCGCCACAACGTCGACCTTGAAGCCGCCCAGGCTCATGTCGTTTGCGAATTCGCAGCCGATCAGGCCGGCACCGAGGATCAg   >  8:14364/1‑149 (MQ=255)                                                                                                                                                   ccAGCCCACCCTGCACAGCCGCCGCAGCGGCCGGGTGCAGCAGGGTCGGCATGATCTGTTCACACGGCGCCACAACGTCGACCTTGAAGCCGCCCAGGCTCATGTCGTTTGCGAATTCGCAGCCGATCAGGCCGGCACCGAGGATCAg   >  5:13657/1‑148 (MQ=255)                                                                                                                                                    cAGCCCACCCTGCACAGCCGCCGCAGCGGCCGGGTGCAGCAGGGTCGGCATGATCTGTTCACACGGCGCCACAACGTCGACCTTGAAGCCGCCCAGGCTCATGTCGTTTGCGAATTCGCAGCCGATCAGGCCGGCACCGAGGATCAg   <  6:213392/147‑1 (MQ=255)                                                                                                                                                    cAGCCCACCCTGCACAGCCGCCGCAGCGGCCGGGTGCAGCAGGGTCGGCATGATCTGTTCACACGGCGCCACAACGTCGACCTTGAAGCCGCCCAGGCTCATGTCGTTTGCGAATTCGCAGCCGATCAGGCCGGCACCGAGGATCAGt  <  5:160412/148‑1 (MQ=255)                                                                                                                                                      GCCCACCCTGCACAGCCGCCGCAGCGGCCGGGTGCAGCAGGGTCGGCATGATCTGTTCACACGGCGCCACAACGTCGACCTTGAAGCCGCCCAGGCTCa                                                 <  7:184485‑M1/99‑1 (MQ=255)                                                                                                                                                      GCCCACCCTGCACAGCCGCCGCAGCGGCCGGGTGCAGCAGGGTCGGCATGATCTGTTCACACGGCGCCACAACGTCGACCTTGAAGCCGCCCAGGCTCa                                                 >  8:184485‑M1/1‑99 (MQ=255)                                                                                                                                                      |                                                                                                                                                  TCGGTACGTGGGCGCAGGCCGATGGCCGAAACCACCAGGTCGCAGGCGATCACGCTGCCGTCCGACAAGTGCGCCTCCAGGCCTTGAGTCACCTGCTGAAGACGGGTCAGC‑ACCGGCCCCAGGTGGAAGCGTACACCCAGGCCCTCCAGCCCACCCTGCACAGCCGCCGCAGCGGCCGGGTGCAGCAGGGTCGGCATGATCTGTTCACACGGCGCCACAACGTCGACCTTGAAGCCGCCCAGGCTCATGTCGTTTGCGAATTCGCAGCCGATCAGGCCGGCACCGAGGATCAGT  >  NC_002947/6061973‑6062266

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.